Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       ------->TEIL                     <-----------ARR10                     <---------ARR11(1)                     --------->ARR14(2)                     <---------ARR14(2)               <---------bZIP60(1)               >>>>>>>>>>HY5               --------->bZIP60(1)               <---------O2               --------->O2               <---------TGA2(1)               <---------ANAC46               <---------bZIP60(2)               --------->TGA2(1)        <---------AHL20(2)--------->ANAC46        --------->AHL20(2)--------->ANAC58   ----------------->AGL3 --------->ANAC58          <---------YAB1 ------->HSFB2a(1)  <---------ARR14(1)           --------->ICU4        <---------YAB1 --------HSFB2a(1)  <---------CCA1(2)       ----------->GT1    <---------YAB1                 <------ >TOE1(2)     ----------->STF1            --------->At4g35610--------->CCA1(2)         <------ZmHOX2a(1) >TOE2(3)    <---------TGA2(2)       <---------ANAC58     <---------YAB1<---------MYB46(3) --------->AHL20(2) >TOE2(2)   ----------->TGA1         <---------ANAC58  ------->TEIL    <---------TOE2(3)   --------->YAB1   accgttccattaaaatgacgtcgtatctaagcaactaattcgtgagatgtaaatatgaatatgatatgatactatggttgaacagaataggaataatata  17217700                                    --------->DAG2                         <---------ICU4--------->ALFIN1         ----------->GT1<---------AHL20(1)     <---------ZAT14    --------->AHL20(2)                     <---------YAB1        --------->DAG2    <---------ZAT6      <---------ARR11(3)                  --------->ARR14(2)      ---------->DOF2  ----------->GT1       --------->AHL20(1)       <----------DOF2           ----------->GT1          - ---AHL20(1)     <----------ID1    ---------->DOF2          <---------ARR14(2) ----------->GT1   ----   tgtatagtgtaatgtaaatgctacaaaatattacagaaaaagtagggggaactttggggtcgaatatgattacaagaaggttagaaaaaagctaaacaag  17217800                  <---------ANAC46                  --------->ALFIN1                  <---------ANAC58                  <---------ANAC58                <---------ANAC58                <---------ANAC46              <------MYB46(1)              <------MYB83          --------->ATHB12                                       <----------DOF2         --------->ICU4                              ------>ZmHOX2a(1)         <---------YAB1  --------->MYB46(3)         <---------ANAC58                               <-   --------->ALFIN1   ----------->HVH21<----------DOF2     <---------MYB52(1)  <----------DOF2     -- -------->ATHB12<---------ANAC58     ------>ZmHOX2a(1)    <----------DOF2  <----------DOF2 <---------AtLEC2 ----->YAB1 <---------WOX13(1)    <-----------GT1   <---------ANAC58   <---------ZAT18 <----------DOF2   aatgagtggtgatgattggtgtgtgtgaccaccattttcctctttctgtctcttccttacctttaggctttagtactctttctttctctctttgcattgt  17217900                           <---------ANAC58                     <---------YAB1               <---------AtMYB61                         <-------GAMYB               <---------ANAC46                       <---------At4g35610             <---------MYB46(3)                     <---------ZAT14            <---------AtMYB61                       --------->ZAT18                               ---            <-----------RAV1(1)                    <---------ANAC58                       --------->ZAT6        <---------ZAT14    <---------ANAC58        <---------ANAC58                 <---------ARR11(3)       <----------DOF2  ------->TEIL             --------->ALFIN1                   <---------ARR11(1) ---------DOF2 --------->ALFIN1            ----------->HVH21                        --------->ARR14(2) ---->ZmHOX2a(1)<---------MYB46(3)        <-----------HVH21     --------->ATHB12   <---------CCA1(2)   cctttaagactttagtggtggtgatgaatgcttactagtgactgtgtcacagtgtgtgctgttgaaacattgggcctctaggcccatatctaacacttaa  17218000                                 <---------PCF2                             =================HOX2a_HOX2a                             ------>ZmHOX2a(2)                            --------->CCA1(2)                            <------ZmHOX2a(2)     <---------ANAC46                            ==================HOX2a_HOX2a                           --------->AGP1         <---------ANAC58                           <---------AGP1         <---------ANAC55(2)                           <---------ARR11(3)     --------->ANAC55(2)                           <-----------ARR10      <---------ANAC58                           --------->ARR11(3)     <---------ANAC55(1)                           --------->ARR14(2)    <---------TOE2(3)                          <---------CCA1(2)     <---------TGA2(2)                  ----------->RAV1(1)   <---------GLK1(2)              <------ZmHOX2a(2)     <---------SPL7      ----------->ARR10     ----------->HVH21       --------->ARR14(1)    <---------ANAC46 ------->GAMYB      <---------ARR14(2)             --------->CCA1(2)   <------NtERF2  ==============================RAV                   --------->ARR14(2)  ------>NtERF2 --------->MYB46(3)      --------->ARR14(2)            <---------ARR14(2)  <-----------HVH21 <---------ALFIN1   <------ZmHOX2a(1)              --------->AGP1 --------->DEAR3(1)------>MYB83  --------->PCF2----------->TGA1       <---------GLK1(2)      <------- <---------DEAR3(1)------>MYB46(1)  <-----------RAV1(2)               --------->ARR11(3)     <------- <---------ANAC46--------->AtMYB61  <---------LBD16         ------->TEIL------>ZmHOX2a(2) <---------- ------>ANAC46 ------->TEIL<---------ARR14(2)<---------At4g35610    ----------->ARR10  <----------DOF2   acggcgtcgtatcgatgaaccaacacacagatctgggcccaggattctactgacgtattacgaacatagacagatccgctcgtcttcttcttttactttt  17218100                                    <---------DEAR3(1)                                   *TSS                                   --------->ATERF1(1)                                  ------>NtERF2                                  <---------SPL7      ----------->GT1                                  <---------RAP2.6(3)<---------HSFB2a(2)                                 <---------ANAC46 --------->GLK1(2)                      --------->DEAR3(1)   <-----------GT1               <---------ANAC58 --------->ARR11(3)                  --------->DEAR3(1) --DAG2                          <---------ANAC58 <---------ARR11(3)         <----------DOF2--------- ---DOF2             <---------AHL20(2)     <---------YAB1               --------->WOX13(1) <-------- -GT1         <------------CBF<-----------GT1--------->YAB1        ---------->DOF2 <---------AtLEC2   ttttttttctctctgaaattgattttttttttttgccgtctgcgttatcaaaaatctcgaaaaaacgttgaaagtcaatctttttgcatcgccgaatttg  17218200                                                                                                 ====                                                                                                 ----                                                                                                 ====                                                                                           <---------HSFB2a(1)                                                                                           --------->HSFB2a(1)                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                         <---------DOF5.7(2)                                                                                         --------->MYB52(1)                                  --------->ANAC58                --------->MYB46(3)  --------->ANAC55(2)        ------>ZmHOX2a(1)      --------->ZAT18                   --------->ANAC58     <---------ANAC55(2)    --------->ANAC46           <---------PCF2                    --------->ANAC58     --------->At4g35610  <---------ALFIN1          <---------ANAC46                <-----------GT1         <-----------RAV1(2) >ARR14(2)       ----------->HVH21--------->ANAC58   ---------->ID1                ================== -ARR14(2)  <---------TOE1(2)<---------ZAT18 <---------At4g35610------>NtERF2      <------ZmHOX2a(2)   aacaacactcctcgtgtgtttgacactcttgtgggcacgataccttctgctccttgtccattttgccacccaaaatccaattgggatcaggtaacgttcc  17218300                                                                                              <------                                                                                             ========                                                                                             ------>ZmHOX2a(2)                                                                                            <------ZmHOX2a(2)                                                                                            =========                                                                                           --------->ARR14(2)             <------ZmHOX2a(2)                                                             --------->ARR14(3)            --------->ARR14(2)                                                             <---------ARR14(3)            <---------ARR14(2)                                                             <---------ARR14(2)            <---------AGP1                                                                 <---------ARR11(3)            <-----------ARR10                                                              <---------AGP1           <---------CCA1(2)                                                               --------->ARR11(3)         --------->ETT(1)                                                                  --------->AGP1       <-----------HVH21                                                                   <---------      <-----------RAV1(1)            --------->YAB1                                       <---------CCA1(2) ====================HOX2a_HOX2a     --------->TOE2(3)                                ------>NtERF2<- -->ZmHOX2a(1)------>ZmHOX2a(2)   <----------DOF2             <---------GLK1(1)    --------->At4g35610 ===================HOX2a_HOX2a<-----------GT1          --------->GLK1(1)        ==================== ===HOX2a_HOX2a          --------->YAB1             --------->LBD16              ------>ZmHOX2a(2) --   tcgtttatttgtcggatctatttgtaatcatatatactttcttaatctgttctccgagatttcgatttctcgttgctcagtgatccgatgccagatcttt  17218400 ----DOF2                                                                          <---------ARR14(2) =====HOX2a_HOX2a                                                                  --------->ARR14(2) =====HOX2a_HOX2a                                                                 --------->ATHB12 --ARR10                                                                  <---------YAB1 --------YAB1                    <---------ICU4                         --------->YAB1          <---- =====HOX2a_HOX2a    <---------ARR14(2)   <----------DOF2              --------->ZAT6           <---- ---->ZmHOX2a(1)     --------->ARR14(2)   <---------DAG2          ----------->GT1<---------YAB1<-----   cctgatagtttttttttgggtcgaatttggattcaaaattgccactttttgttgtgaattttgaaaatttgtaatactaattgaagattgggttttgtag  17218500                                                                             <----------DOF2                                                                      --------->ZAT14                                                     <---------YAB1   <-------TEIL     ---------->DOF2       <---------YAB1          --------->ZAT6     <---------ZAT14 --MYB46(1)       <---------GLK1(2)             --------->AHL20(2)<---------------AtSPL8 --MYB83     --------->At4g35610                <---------AHL20(2)--------->DAG2   ---------->DOF2 ----TOE1(2) <---------At4g35610   <-------TEIL--------->AHL20(2)---------->DOF2 <---------YAB1   gttttcccaaagttgagctagcttctcttatgctcgattcgtcgagcaaattaatactatagaagaaaaaagtacagagctttattaaagcaaattagca  17218600  Previous    Next  AGI:  At4g36480.1    Description:  ATLCB1 (LONG-CHAIN BASE1); protein binding / serine C-palmitoyltransferase. similar to serine C-palmitoyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G48780.1); similar to hypothetical protein OsI_009166 [Oryza sativa (indica cultivar-group)] (GB:EAY87933.1); similar to putative serine palmitoyltransferase LCB1 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD19391.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67084.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains Range:  from: 17218135    to: 17221480    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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