Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                ------->GAMYB                             --------->MYB46(3)                             <---------MYB52(2)                           ----------->RAV1(1)                          --------->REM1(1)                         ------>MYB83                         -------->P            --------->RVE1(1)                         ------>MYB46(1)  --------->TOE2(3)         xxxxxxxxxxxxxxxx>smallRNA(i)     --------->YAB1                                      -------     --------->AtLEC2------->TEIL        ----------->GT1                                   <--------- -->TOE2(3)          <XXXXXXXXXXXXXXXXXXXXMIR857--------->ARR11(3)                     <---------YAB1 -HSFC1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                            ----------->GT1  -- >HSFC1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ARR11(3)         --------->CCA1(2)  -------   catagcaatgcaacttcattatgcacctacaacaaacaaaacaatgttaatatctctaaactagttagtagaagaagatagaccatgttaatattacctt  17212700                                                <---------ARR11(3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     --------->ANAC58                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ANAC46                                          <xxxxxxxxxxxxxxxxsmallRNA(i)              --------->ANAC58                                       --------->bZIP60(1)              --------->AHL20(2)  ---------                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          ------>MYB46(1)                                    <---------ETT(1)                   --------->AHL20(2)   <xxxxxxxx                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)           ------>MYB83                                    ----------->HVH21          <------MYB46(1)     xxxxxxxxxxxxxxxxxx                                    ------->GAMYB              <------MYB83--------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------bZIP60(1)   <--------P<---------AHL20(2)<xxxxxxxxxxx -->TOE2(3)                         --------->ANAC46        <-------GAMYB  <---------AHL20(2)      <- --GT1                            --------->At4g35610      <---------MYB46(3)      <xxxxxxxxxxxxxxxxx ------->MYB46(3)                 <---------At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<-------- -->TOE1(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxx   aacaatccaaaaaaacagcaatacatgaacgaagtcatccgacatcacaatttcttcatagcggttggacaaaataaataaataccaagcagcaaatact  17212800                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                                             ----------->HVH21                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                             --------->ALFIN1   ------->GAMYB                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                           =============================MYC_MYB                                                           --------->O2 <xxxxxxxxxxxxxxxxsmallRNA(i)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   xxxxxxxxxxxxxxx              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ARR14(2)                 ----------->GT1   <---------MYB46(3)   <xxxxxxxxxxxxxx            <---------ARR14(2)               <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxx           --------->GLK1(1)                --------->ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------GLK1(1)                <---------ALFIN1xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------CCA1(2)              --------->AtMYB61==========================================           <----------TaMYB80             ------->GAMYBxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <xxxxxxxxx          --------->ARR14(2)              ===========================MYC_MYB<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <---------ANAC58                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)----------->RAV1(1)       <---------ANAC58                  --------->MYB46(3)<---------O2--------->ANAC58   <xxxxxxxxxx       <---------ANAC46                 -------->P xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <xxxxxxxxxxx      ---------->ID1                    =============================MYC_MYB<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->MYB46(3)  <---------ANAC58                     ==============================MYC_MYB--------->MYB46(3)   <xxx  <---------ANAC58                     ------->GAMYB  xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <---------MYB55(2)   --------->TGA1a----------->RAV1(1)<xxxxxxx >ARR14(2)<---------ARR14(2)          <---------MYB111(2)  <---------TGA1a<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxsmallRNA(fl3)         --------->MYB46(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<xxxxx xxx>smallRNA(fl3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxx xxxxxxxxxxxxsmallRNA(fl3)          xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ANAC46<---------ZAT14 --------CCA1(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->YAB1<---------AtMYB61   xxxxxxxxxxxxxxxx>smallRNA(i) xxsmallRNA(i2)  <---------ALFIN1  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) --------->ANAC58--------->ZAT14 -ARR14(2)---------->TaMYB80  --------------->AtSPL8<---------YAB1  <---------SPL7 <---------MYB46(3) xxxxxxxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i) ------   tctatcttgtcgtatatccccatctcaaacttgttgtacaacaaccacacagttataatcgacgtgatggtggacgcaacaacagtcgttgcactgccaa  17212900                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           <xxxxxxxxxxxxxxxxsmallRNA(i)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     --------->ANAC58                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxsmallRNA(i)                                     --------->ANAC58                                     --------->ANAC46                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                  xxxxxxxxxxxxxxxx>smallRNA(i)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              --------->ANAC55(1)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             --------->ANAC58                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          xxxxxxxxxxxxxxxx>smallRNA(i)                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)          <---------GLK1(2)                          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->DAG2    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <-------TEIL  <---------ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)---------->DOF2          --------->CCA1(2)    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxsmallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(i)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  --------->ANAC58   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(i) x>smallRNA(i)           xxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ANAC58  --------->ANAC46 xxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) <---------ARR11(3) =====bZIP_DOF        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->LBD16 xxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC58 <---------LBD16     <x xxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->DEAR3(2) xxxxxxxxxxxsmallRNA(i)<--------P<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  <--- ---->DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   agtcttcataaggctcaaatttttggtaagtgactagacacacaatgcgcaggcagacattcacaagatacaacacattctcacggaaaccggcattcac  17213000                                                                                                   <x                                                                                                  <xx                                                                                                <xxxx                                 --------->ANAC46                                               <xxxx                              ------>ZmHOX2a(2)                                                 <xxxx                            --------->ARR11(3)                                                 <-----                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               ------                            --------->ARR14(2)                                                 ------                            <---------ARR11(3)                                                 ------                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   <-----------GT1 <-----                     --------->CCA1(2)                                     <---------AHL20(2) <xxxxxx                    <---------ARR11(3)--------->MYB46(3)                   --------->AHL20(2) xxxxxxx                    --------->ARR11(1)<---------MYB111(1)                  <---------AHL20(1) <xxxxxx                   xxxxxxxxxxxxxxxx>smallRNA(i)                            --------->YAB1     xxxxxxx                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    <--------ATHB1    <xxxxxxx               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ICU4   <xxxxxxxx              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                       <---------ATHB51  <------ZmHOX2a(1)          --------->AtLEC2  <---------ARR14(2)  <---------ARR11(3)---------->DOF2 <-----------GT1<xxx       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------ATHB12  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <----------DOF2xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxx  <---------DAG2---------->DOF2 ------>ZmHOX2a(1)     <----------DOF2     --------->ICU4 <---------LBD16 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ATHB12 <xxxxxxxxx -------DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <xxxxxxxxxxx   tttgccttttccatccaaaaaagatttgatgatcctcccaactactccaataacttctttttctccatcaaagctaataattttcaactcttcaggaacc  17213100 xxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----HSFC1(2) --->HSFC1(2) --->MYB46(3) --->HSFB2a(1) ----HSFB2a(1)        <----------DOF2 xxxxxxxxxxxxxxxxxsmallRNA(fl3)                              <---------HSFC1(1) xxxxxxxxxxxxxxxx>smallRNA(fl3)                              <---------HSFB2a(2) xxxxxxxxxxxxxxxsmallRNA(fl3)                                --------->HSFC1(1) xxxxxxxxxxxxxxxx>smallRNA(se3)     ------>MYB46(1)          --------->HSFB2a(2) xxxxxxxxxxxxxxsmallRNA(si3)        ------>MYB83--------->GLK1(1) xxxxxxxxxxxxxxxsmallRNA(fl3)     <---------MYB111(2)  <----------DOF2     <---------WOX13(1) xxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------MYB46(2)   <---------DAG2     <------------CBF          - xxxxxxxxxxxxxxxsmallRNA(i2)     --------->ANAC46    <---------At4g35610 --------->ATHB12     <------ xxxxxxxxxxxxxxsmallRNA(i2)    <-----------GT1  <---------GLK1(1)       <-------TEIL <xxxxxxxxxxxxxxx xxxxxxxxxxxxsmallRNA(si3)<---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxx   atcttagcatctcgatcgagtaatctttttgattcaccaaactcaaacagatttcagctttttctagacaaagattcattgattcaacatcgcaagtcca  17213200                                                                                                    <                                   ------->GAMYB                            <----------DOF2         <                                  --------->ANAC46                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  --------->ANAC58                       ------>MYB46(1)           --                               <---------WRKY12                        <---------MYB59          <xxxx ---------->GT1                <---------WRKY38(1)                     --------->MYB46(3)   --------- -TEIL                     <---------ZAT6    --------->YAB1           --------->ANAC46     --------->TOE2(3) xxxxxxxxsmallRNA(i2)--------->ZAT6------------>CBF                 <-----------GT1      ------>MYB83 xxxsmallRNA(i2)--------->TOE2(3) --------->ANAC58     <---------AHL20(2)------>MYB83    ------>MYB46(1)   tattgaaaattttagttttcttaaaactagtgttcaacgcaatttgatcatatcaaatttatctagagatttacccaactttccctaaaccaacttcaat  17213300                         <---------ZAT18                         --------->ZAT14                         <---------ZAT14           --------->ARR11(3)           <---------ARR11(3)          --------->CCA1(1)                                           --------->ARR11(3)          --------->RVE1(1)                                           <---------ARR11(3)    <---------HSFB2a(2)  --------->ZAT18                            <---------AHL20(2)    --------->HSFB2a(2) <---------ZAT6  <---------ARR14(2)    <----------DOF2 ------MYB83 >>>>>>>>>RAP2.2           <-----------TBP       --------->TOE2(3) ------MYB46(1)        <---------------AtSPL8                --------->TOE1(3)                <------ ------->MYB59 ---------->DOF2        ------->TEIL        <-----------GT1                    -------- xxxxxxxxxxxxxxxxxxsmallRNA(s2)    ----------->GT1      <---------MYB52(2) ------------>CBF <-------- --->CBF xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <------------CBF --------->YAB1       <-----------GT1   gtaggtctcgaaatatctaaaggctagtgtacaaaaaatgtatatatggacattgacaaataacctttaataaatctttcaatagcatttacctctttac  17213400                                               <---------MYB46(2)       --------->ANAC46                        <---------MYB111(1)       --------->ANAC58                        <---------MYB52(2)                  <-----------------     <---------ALFIN1                          --------->MYB46(3)               <---------RVE1(1)    --------->MYB46(3)                       <-----------GT1                   <---------GLK1(2) -----GT1                               <---------YAB1 --------->YAB1          <---------ARR11(3) ->ZAT14--------->MYB46(3)              --------->ICU4<---------YAB1           --------->ARR11(3)---- --DOF2--------->ANAC58         --------->TOE2(3)-------->P        ---------->ID1 <---------AHL20(2)   tcttctcccacccaaaaatccaaaactccattaaccaaaatcaagattaactacccatgataaaaatttgtcttcaaaatagatttttttttgttttttg  17213500                                                                                           --------->DAG2                                                        --------->TOE2(3)                 ---------->DOF2                                      <----------DOF2 <---------ARR11(3)             >>>>>>>>>RAP2.2                                  <---------CCA1(2)   --------->ARR11(3)           <---------ARR11(3)          --------->At4g35610   --------->YAB1     <---------AHL20(2)             <---------CCA1(2)       ---------->ID1      --------->ANAC55(2)     --------->AHL20(2)          --------->AHL20(1) -------ANAC81           <---------AHL20(2)      --------->YAB1                <---------AHL20(1) ------>ID1              <-----------GT1   <-----------GT1                    --------->AHL20(2)-----   tttttttttgtcatcttcaaaatagatttacttatcatctctttttaacaaatataaatcttattagaaacaaaaaacaaatatatatctaaaaaagttt  17213600  Previous    Next  AGI:  At4g36460.1    Description:  unknown protein Range:  from: 17212665    to: 17213102    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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