Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ZAT14                                                    --------->AtLEC2                                               <------MYB46(1)                                               <------MYB83                                              --------->MYB46(2)                                              --------->MYB59                                              <---------AtMYB61                                            <---------MYB52(1)                                          <------MYB83                                          <------MYB46(1)                                  <---------ANAC58                                       --------->ARR14(2)                             --------->ARR14(2)                                       <---------ARR14(2)       <------ZmHOX2a(1)   --------->ANAC58                                  <---------O2--------->MYB111(1)             <-----------HVH21 <---- -------->YAB1                    <---------bZIP60(2)<---------ZAT14    --------->AtLEC2   <---------ANAC58 ---------->GT1                   <---------ANAC58<---------ANAC46   <-----------------------TaNAC69(2) --------YAB1                     <---------ANAC46<---------ANAC58--------->GLK1(1) --------->ANAC58 --->RAV1(1)     --------->ALFIN1 <---------ANAC58<---------ANAC58<---------GLK1(1) --------->ANAC46   tatgataaaacacatcgacttgtggctctctgagtgtcgtggataggttaggtcgtgcagagattaggagttccatgcagagtcacacgaactgcgttct  17126700                                                                               <---------ZAT18                                                                               --------->ZAT18                                                                     ================================                                                                     <---------bZIP60(2)                                                                     --------->ANAC55(2)                                                                     --------->TGA1a                                                                     <---------TGA1a                      --------->ANAC46                               --------->ANAC58                      --------->ANAC58                               <---------O2                      --------->ANAC58                               <---------ANAC55(2)                   <---------SPL7                                    --------->O2       --------->AHL20(2)                                            --------->ANAC46   --------->AHL20(2)------->TEIL                                <-----------HVH21                  <  --------->AHL20(2) <---------ZAT18          =================================MYC_MYB  --------->ARR14(2)  <---------AHL20(2) --------->ZAT18          <------------AtMYB77   --------->ANAC58   <---------ARR14(2) -----HSFB2a(2) --------->At4g35610<---------CCA1(2)    ----------->HVH21      --------->ZAT14     <-   gcaaataaataaaacatcagatgtacgctccaaacttatatctgtgtaactgtaacctctgaaactgagtcacgtagcaagtccactcggtatctcgatt  17126800                                     --------->CCA1(2)                                    --------->ARR11(3)                                    <---------ARR14(2)                                           <---                                    --------->ARR14(2)                                           ----                                    --------->ARR11(1)                                         <-----         --------->MYB46(3)         <---------ARR11(3)           --------->GLK1(2)             <-----   <----------DOF2   --------->ARR14(2)                         <---------GLK1(2)    --------->PCF5 =============bZIP_DOF          --------->ANAC58                <---------ARR14(2) <---------MYB46(3) ---------TOE1(3)    <---------ARR14(2)        <---------LBD16  --------->ARR14(2)<---------AtMYB61 ----------GT1---------->DOF2   --------->ANAC58            <-------TEIL          --------->ALFIN1   ttaagctttcatccactaaggcgaatacagtagcacgagatatggccactcgggaatggaggttcagattctatctcttaatcggtggtccatcttggct  17126900                                                                       <---------MYB46(3)                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                     <-------GAMYB                                                                    <------MYB83                                                                    <------MYB46(1)                                                                    <---------MYB46(3) ------At4g35610                                                   --------->MYB59 ----->At4g35610                                                   <---------AtMYB61          <------ ----ANAC58                                                <---------AHL20(2)            <----------- ----ANAC58                              <-----------GT1   <---------YAB1     <---------MYB52(1)   tctgcctctcattgttgaagacaatcgaccttgtgtcaagttttatctgttttgccctgttttaattgtttggttgttctgttactctgtttccatcttt  17127000                                                                                        <---------ICU4                                                                                       <-------------                                                                                       --------------                                                                                      ---------------                                                 --------->LBD16                      <--------------                                                 <------NtERF2                        <--------------                                               <---------LBD16                        ---------------                                          ---------->DOF2                             ---------------               ------>NtERF2             <---------AHL20(2)                           ---------------               ----------->RAV1(1)  --------->AHL20(2)             --------->ICU4     <--------------  <---------AHL20(2)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->AHL20(2)    <--------------- ----DOF2     <----------ID1        <---------AHL20(2) ----------->TBP       <-----------GT1 ------AGL2--------->ANAC46        --------->AHL20(2)  <---------YAB1 <---------YAB1<-----------GT1 -   ggttttaatttctacgacgacaaaaaaaaaaaaaaaaaaaaatttaaagtccgcgttataaaaaaaaaaatgatttttgttacaaattactaattaggga  17127100                *TSS               <---------AHL20(1)    <---------YAB1 <---------YAB1--------->AHL20(1) --AGL15       --------->AHL20(2) ->AGL15       <---------AHL20(2) -->AGL3      --------->AHL20(2) ---AGL2     <---------YAB1 ---AGL1   --------->YAB1                                                    ------>NtERF2 -->AG     <---------ICU4                                             <-----------GT1 -->AGL1   <--------HAHB4           ----------->GT1         <---------ALFIN1 --------->LBD16   <----- -->AGL2  <---------ATHB12     <---------AHL20(2)          <---------ZAT18 <---------LBD16 <---------At5g28300 ---AGL3  <---------YAB1       --------->AHL20(2)          <---------WRKY38(1)    <------ZmHOX2a(2) --AG     --------->ICU4 --------->AtLEC2                  --------->ZAT18--------->MYB52(1)--------- -------->TOE2(3)       ------>ZmHOX2a(1)         <----------DOF2    <-----------GT1       <---------LBD16   aacattattctaatcattatattgtccttgcaatttataagtaaaaacatttcttttctggtccactcgttttaacttccggcgatcgattttcacggcg  17127200                   <----------DOF2                  <---------ANAC58                  <---------ANAC58             <-------GAMYB            <---------MYB46(3)          <------NtERF2          --------->ATERF1(1)         <---------RRTF1(1)         <---------ERF1         <---------ORA47(2)         <---------RAP2.3(1)        <---------DEAR4(1)        <---------RRTF1(3)        <---------At1g77200        <---------DREB2C(2)                    ------>ZmHOX2a(1)        <---------DEAR3(1)                  <------ZmHOX2a(2)        <---------RAP2.3(3)                --------->ARR14(2)                                  ------        <---------RAP2.3(2)       <---------ARR11(3)                                           <-----       <---------ORA47(1)         <-----------ARR10                                          <------ZmHOX2a(1)      <-----------HVH21<---------ANAC58    <---------ARR14(2)                              <---------TOE1(2)  <-----------RAV1(1)  <---------ANAC58 <---------HSFB2a(2)  ------->TEIL                  <---------TOE2(2) ----ANAC46 ------>NtERF2       <---------At4g35610 ---------->ID1                      --------->TOE2(1) >ANAC46--------->ETT(1)<----------DOF2 --------->HSFB2a(2)  -------->P                 --------->TOE1(1)   agaaatgttgtcggcgcttggctttgctttactcagcatcttcgcgatcctcttgtcgttatcaaccttgtctaatggattacttcaacctcgtaggatt  17127300        <---------WRKY18(1)        --------->MYB52(1)                                       ===================HOX2a_HOX2a       ----------->HVH21                                         <------ZmHOX2a(2)              -----      <----------DOF2                                           --------->ARR11(3)             ------     <---------ANAC46                                 --------->YAB1                          <------     <---------ANAC58               <XXXXXXXXXXXXXXXXXXXXMIR165A/B<---------ICU4       --------->WOX13(1)     <---------ANAC58 --------->ANAC58               <---------ATHB12           --------->HSFB2a(2) --->GLK1(1)          --------->ANAC58   --------->At4g35610    <---------ARR11(3)   <---------ATHB12 ----GLK1(1) ---------->DOF2----------->HVH21      --------->WOX13(1)        ------>ZmHOX2a(1)-------   tctcatggcttgacggaaagtagcaagtacttgacgagggatgagctctggttcaatcaaaccctagatcattactctccttctgtaatcaatcttcccg  17127400                                                                                              -------                                                           --------->ARR14(2)            <------ZmHOX2a(2)                                                           <---------ARR14(2)           <---------ARR11(3)                                                       <---------LBD16                  --------->ARR11(3)                                                       <---------ANAC46                 --------->ARR14(2)        <<<<<<<<<TBF1                                 <---------LBD16                   <-----------ARR10   <---------MYB52(1)                            --------------->AGL15                 <------ZmHOX2a(1) ->NtERF2                                        <---------------AGL15               <---------TOE1(2) --->LBD16                                      <-----------------AGL1              <---------LBD16 ---HSFB2a(2)                    <----------DOF2<-----------------AGL2        <---------AHL20(2) -->HSFB2a(2)          <-----------GT1          <-----------------AGL3       --------->AHL20(2)   <--   acttcgtttcttcttcaatttgaattttcttcttgcattatcgaattgtttctaatttcgggattcgaattgtttctaattttatctcaggatcatcgcg  17127500                                                                   ==================HOX2a_HOX2a                                                               <---------YAB1                                                        <----------DOF2                                                       --------->YAB1    <---------ANAC46                        --------->HSFB2a(2)          ------>MYB46(1)<-----------RAV1(1)                     <---------ARR11(3)              ------>MYB83<---------ARR11(3)                     --------->ARR11(3)            <---------MYB59 ------>ZmHOX2a(2)        <--------                     <-----------ARR10           ------->TEIL--------->YAB1    --------->ARR11(3)                     <---------ARR14(2)       <---------WOX13(1) --------->ARR11(3)         --------- -->HSFB2a(2)      ------->TEIL            ------>ZmHOX2a(1)<---------YAB1    <------ZmHOX2a(1)     < -------ARR14(2)<---------YAB1             ===============================HOX2a_HOX2a       <--------   aattcaaacagcgatactatgaatatctagaccatttacgagttcctgatggacctatctttatgatgatctgtggcgaaggaccttgcaatggaatccc  17127600  Previous    Next  AGI:  At4g36190.1    Description:  serine-type peptidase. similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT4G36195.2); similar to EDA2 (embryo sac development arrest 2), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT2G18080.1); similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT4G36195.1); similar to unknown [Populus trichocarpa] (GB:ABK95760.1); contains InterPro domain Peptidase S28; (InterPro:IPR008758) Range:  from: 17123969    to: 17127021    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g36195.1    Description:  serine carboxypeptidase S28 family protein. similar to serine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G36190.1); similar to EDA2 (embryo sac development arrest 2), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT2G18080.1); similar to unknown [Populus trichocarpa] (GB:ABK95760.1); similar to Os10g0511400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065039.1); contains InterPro domain Peptidase S28; (InterPro:IPR008758) Range:  from: 17127116    to: 17129934    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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