Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       --------->ZAT14                                                     <---------ZAT14                                                     --------->ZAT18                                                   ------->PIF5                                                   ------->MYC2                                                   <-------PIF5                                                   ------->MYC3                                                   <-------MYC2                                                   <-------PIF4         <---------LBD16                           ------->PIF4  <--------P                                       <-------MYC3 --------AtMYB61                                  <---------ANAC58 ----NtERF2                                       <---------ANAC58 ----->LBD16                                      <---------ANAC46          <---------------AtSPL3 ---->DEAR3(1)      <-------GAMYB                 <------NtERF2   --------->ZAT18 ----LBD16          <---------ANAC46         <---------DEAR3(1)   <---------ZAT14  <-------GAMYB    - ->DEAR3(1)--------->LBD16      ---------->DOF2  ------>NtERF2    --------->ZAT14 <---------ANAC46<--   ggaggtagtttaccggagagtgagttgtactgaagaaagacggagagtaggcgcgtgcagtaagcgagtgaagtagggatagtaccgttgaaagagttag  17123400                                               <---------GLK1(2)                                               <---------ARR14(2)                                               --------->ARR14(2)                                     <-------TEIL<-------TEIL                          ----------->HVH21                                    --------->ARR14(1)                            ------>ZmHOX2a(2)                          --------->WRKY38(1) --------->HSFB2a(1)                <---------GLK1(1)                          --------->WRKY12    --------->GLK1(1)                  --------->GLK1(1)                       <---------ANAC58   =====================================HOX2a_HOX2a       ====                       <---------ANAC58   ------>ZmHOX2a(2)                      <------ZmHOX2a(2)                   <---------ANAC58 --------->CCA1(2)                           --------->ARR14(2)                   <---------ANAC58--------->ARR14(2)                           <---------ARR11(3) <-              <---------ANAC58     --------->ARR11(1)  --------->LBD16          --------->ARR11(3)<--              <---------ANAC46     <---------ARR14(2) --------->HSFB2a(2)       <-----------ARR10<---              <---------ANAC58    --------->GLK1(1)  <---------LBD16            <---------AGP1  <----         --------->At4g35610      <---------GLK1(1)  --------->SPL7             <---------ARR14(2)===         --------->ZAT2<---------ANAC46  <------ZmHOX2a(2)                      ------->TEIL    -----         <---------At4g35610 <---------LBD16  <---------GLK1(1)         <------ZmHOX2a(1)      ------ -------->LBD16--------->LBD16 --------->LBD16<---------HSFB2a(1)       ================HOX2a_HOX2a<- -------LBD16 --------->ANAC55(2)----------->ARR10 <---------SPL7       =================HOX2a_HOX2a   accggagactgagcttccgtagcatgcgtagaccggagatacgatcggagattcgtccggagagttggagacgaggaagacggatctcagtgacacggtg  17123500                 ------>NtERF2                --------->O2                --------->bZIP60(2)                --------->ANAC58                <---------O2                --------->ANAC46                --------->TGA1a                --------->ANAC58               ------>NtERF2            ==============MYC_MYB            ------->GAMYB           --------->ANAC46         --------->MYB52(1)         <---------ATERF1(1)       --------->MYB46(3)          <---------ANAC46      --------->ANAC46            --------->ZAT2 <------ZmHOX2a(2)   --------->ZAT14       <---------O2           <---------ARR11(3) =========================MYC_MYB <---------ZAT2--------->ARR14(2) --------------AtSPL3 ----------->HVH21   <---------REM1(1) ------P<---------WRKY38(1)    <---------ZAT2   <---------ARR14(2) ----GAMYB --------->ANAC58    --------->At4g35610  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)             - -----MYB46(3)<---------ALFIN1 <---------At4g35610------>ZmHOX2a(2)                     <---------ANAC46 =========================MYC_MYB --------->At4g35610                               <-------GAMYB   < ---->MYB55(2)--------->DEAR3(1)  <---------At4g35610                              <---------MYB46(3) --->ALFIN1--------->ANAC58    --------->ZAT2  <------ZmHOX2a(1)           <-----------HVH21    ----- --------------AtSPL8<-----------HVH21 <---------ANAC46      ---------->DOF2      <---------TOE2(3)<-   gttagtacagccaacgccacgccagtcacatggagctgctggtgttgaaggatcccatgaagttaaagcaccgagagggtcatggaggttgagtttaaac  17123600                                                          ----------->HVH21                                                ------->GAMYB                                             --------->MYB52(1)                                   <---------SPL7   --------->ANAC58                                  <---------ANAC58  <---------ANAC46                                <           --------->WOX13(1)     <---------ANAC46  --------->ANAC58                                - -------->LBD16                   <---------ANAC58  <------NtERF2                                   < -----------HVH21              <---------DEAR3(1)  ------>NtERF2 <------ZmHOX2a(1) --------->CCA1(2)- ---->ANAC46                  <---------At4g35610 <---------ANAC46                <---------ARR11(3)- --------ANAC46            <-------TEIL    <---------MYB52(2) <---------LBD16     --------->ARR11(3)<   gccgtgagagcatcaatctcggcttgagattcatcggcgtatgagactaacggcgcgtaaatgaccaggaaaatgaagaacagagatatatccatggcca  17123700            <---------ZAT18                                       ----------->GT1            --------->ZAT14                                      <---------AtMYB61            <---------ZAT14                                <---------YAB1   <-----------RAV1(1)                                     --------->ICU4  ------>ZmHOX2a(2)                                     <------NtERF2 --------->CCA1(2)                                     ------>NtERF2 <------ZmHOX2a(2)                                    --------->ETT(2) ---------ARR14(2)                                    --------->bZIP60(1)                  <---------At4g35610 -------->ARR14(2)                                    <---------ETT(2)      --------->HSFB2a(2) ---------AGP1                                        <---------bZIP60(1)   <---------HSFB2a(2) -------->AGP1                                     --------->ALFIN1        <---------LBD16 --------->At4g35610 -------->ARR11(3)             <---------ANAC58   <---------HSFC1(2)<XXXXXXXXXXXXXXXXXXXXXMIR173 ---- ---------ARR11(3)             <---------ANAC58<---------ZAT14 --------->ALFIN1        <---------KAN4(2)   tagatctgtggcagtgaacaaaatgaaaacttagcttgaagaaggtgagagaagtgtcgccatgagtgtggtttttttctgggagagagaatgagcagaa  17123800           <---------TOE1(3)                              <---------ZAT14           <---------TOE2(3)                *TSS          --------->ZAT18          ---------->DOF2     --------->ARR14(2)          --------->LBD16                         <--      ----------->GT1         <---------ARR14(2)          <---------ZAT18           --------->AHL20(2)    ---------->DOF2           --------->ARR11(3)          <------NtERF2             <---------AHL20(2) ----------->GT1              --------->GLK1(2)         --------->ZAT18   ------->TEIL            <-- ------>DOF2    ---------->DOF2        <---------ANAC46 <---------ZAT18--------->AtLEC2  --------->YAB1   aaagagtaaagttaaagtaaaagaaatacaaaaatctggttctgtagataatttgaagtccgcactataatccatgcatttactaaaaaaatgatactat  17123900                               <---------AHL20(1)                               --------->AHL20(1)                               <---------AHL20(2)                              --------->AHL20(2)                             <---------YAB1                           <--------HAHB4                           --------->YAB1                           <---------ICU4                          --------->ICU4       ----------->GT1    <---------ATHB12      ----------->GT1     <---------YAB1 --------->AtLEC2    <---------ANAC46<---------YAB1      ------>ZmHOX2a(1)                          <-----------GT1 -------MYB46(3)--------->TOE2(3)<------------CBF                    *TSS ----------->GT1 ---------RAV1(1)<---------YAB1--------->AHL20(2)                  ------------------------>ANAC81   ttgttggaggggaaaaaacattattctaatcattatattgtccttgcaagtttttttttttaaaaacaaatacaaacagagaaaatcacattattttgtt  17124000                                                                     <----------DOF2                                                                    <---------ANAC58                                                                    <---------ANAC58                                                               <---------ANAC58                                                               <---------ANAC58                                                              --------->ZAT2           <-----------HVH21                                                         <------NtERF2                --------->AtMYB61                                                       --------->ETT(2)            <---------ALFIN1                                                       <---------ANAC46          -------->P                                                       <---------ANAC58         <-----------GT1                                          --------->ANAC46<---------DEAR3(1)  <---------ANAC58          <---------ALFIN1               <---------LBD16<-----------HVH21 <----------DOF2         --------->ZAT18  <---------DEAR3(1) <---------ANAC46 <---------ZAT2  <---------ANAC58 ------         <---------WRKY38(1)    <------ZmHOX2a(2)      <---------ANAC58  <---------ANAC58      <-----         <---------ZAT18 <---------LBD16 <---------At5g28300<------NtERF2<---------ANAC58  --------->ANAC46   ttgttttctggtccactcgttttaaactacggcgatcgattttcacggcgagaaatgtcgtcggagcttggctttgctttacttaccaccttcacggtgc  17124100                                                             <---------------AGL15                                                             --------------->AGL15                                                            ----------------->AGL3           <---------TOE1(3)                 <---------GLK1(1)  --------->DAG2   <---------ANAC58                          --------->GLK1(1) ---------->DOF2----------->HVH21   <---------ANAC46                        <------ZmHOX2a(1)----------------->AGL1   <---------ANAC58                      <---------TOE2(2)  ----------------->AG  ---------->ID1                         <---------TOE1(2)  ----------------->AGL2                 <- --->ABI4(2)  <----------DOF2         --------->TOE2(1)<---------ANAC58 --------->ANAC58           -- ----ZAT18<-----------GT1             --------->TOE1(1)<---------ANAC58 --------->ANAC58   --------->At4g35610   tcttgtcgtatttaagcttttctaatgggttactgcaacctcgtaggatttctcatggattgtccaaaagtagcaagtacttgacgagggatgagctctg  17124200                    --------->ZAT14                --------->ZAT6         --------->TOE2(3)         --------->TOE1(2)         --------->TOE1(3)                           <---------MYB52(1)  --------->ANAC46  <---------ZAT14                <---------ANAC58 --------ZAT18 <------ZmHOX2a(2)     --------->WOX13(1)   <<<<<<<<<TBF1                 <---------MYB52(1) ------->ZAT14--------->ARR11(3)   <---------ATHB12<---------ANAC58                <----------DOF2   gttcactcaaaccttagatcactactctccatctgtaatcaatcttcccaatttcgtttcttcttcgattttagtttctgtttctctttcgttattgaaa  17124300  Previous    Next  AGI:  At4g36180.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G75640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48247.1); similar to putative receptor-like protein kinase [Capsicum frutescens] (GB:ABP88740.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61046.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein k Range:  from: 17120088    to: 17123844    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g36190.1    Description:  serine-type peptidase. similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT4G36195.2); similar to EDA2 (embryo sac development arrest 2), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT2G18080.1); similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT4G36195.1); similar to unknown [Populus trichocarpa] (GB:ABK95760.1); contains InterPro domain Peptidase S28; (InterPro:IPR008758) Range:  from: 17123969    to: 17127021    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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