Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->ETT(2)                      --------->KAN4(2)                     --------->KAN4(1)                     <---------KAN4(1)                     <---------HSFB2a(1)                     --------->HSFC1(2)                     <---------HSFC1(2)             <------ZmHOX2a(2)                           <---------ANAC58            --------->ARR11(3)                           <---------ANAC58            <---------ARR11(3)                  --------->ALFIN1        ---------->DOF2 <-------TEIL         --------->DAG2                               --------->ATHB12      --------->ZAT18--------->HSFB2a(1)    ---------->DOF2   ------->TEIL            <---------MYB46(3)    <---------------------WRI1    ---------->DOF2        <---------ANAC46            --------->ALFIN1    --------->ZAT18 <---------KAN4(2)    >>>>>>>>>TBF1<------ZmHOX2a(1)        <------ZmHOX2a(1)   tgagagagcgcaaagatcgaagaacattcgtcgagagaaagaagaagaaagtgggaggagcgtgtatgtgccagagaagaaggagcagtggatgatttat  17097200                  <-----------GT1             <---------DAG2                                                         <---------AHL20(2)             <----------DOF2                                                     --------->AHL20(2)       <-----------RAV1(1)                         ------->GAMYB                 <---------AHL20(2)<-       <---------MYB46(3)            ---------->DOF2                   --------->DAG2         -------     <---------At4g35610<----------DOF2   --------->ANAC46            ---------->DOF2         <------   gcgcttgggctgtcgctttttttcaactttgacgctccacaaagacacaacaacgacatctctctatttcaaaaaagttttatttttttattcattttaa  17097300                                                                   --------->ZAT18                                                                   <---------ZAT18          --------->AHL20(1)                                       --------->ZAT14          --------->AHL20(2)                                       <---------ZAT14          <---------AHL20(2)                                       <-------TEIL            <---------AtLEC2         <---------AHL20(2)        ---------->ID1                 --------->ALFIN1      ------->PIF5         --------->AHL20(2)      <-----------RAV1(1) --------->ANAC46                   <-------PIF5    --------->AHL20(2)           <---------MYB46(3)  --------->ANAC58                  --------->At4g35610 ------TEIL           ---------->DOF2                --------->ANAC58                <-----------RAV1(2) -->AHL20(2)          <---------AHL20(2)           --------->MYB52(1)  <---------MYB52(1) <-------TEIL ---AHL20(2)         --------->AHL20(2)  <----------DOF2 --------->ARR14(2)  ------>ZmHOX2a(1)    <--   atacattttaaaaaaattaacaaataaatcgccatttgttgttcttttttcaaaaacggaatacgagggtgcagttatcctctacgagcaggtgcatgta  17097400                                                      <---------MYB52(1)                                             --------->ARR14(2)                                             --------->ARR14(3)                                             <---------ARR14(3)                                             --------->GLK1(2)                                             <---------ARR11(3)                                             --------->ARR11(3)                               <------                                             <-----------ARR10                      <---------ATHB12        <---------WOX13(1)              <-------TEIL --------->LBD16             ------------>ATHB5     ----------->HVH21                 --------->CCA1(2)     <---------TOE2(3)  ------------>CBF ----   ----------->RAV1(2)            ---------->DOF2   --------->LBD16         --------->DAG2    ------- ---------GT1                   --------->ANAC46   <---------LBD16         ---------->DOF2   --------   ataccatctgatggatttgacttatcgtttatccacaaaagattcaaaatcttcccggtttttaagtttgggcttcataaggcccaattagtggcaaatc  17097500                                                                                                    -          --------->STY1(1)                                                                      ----      --------->ZAT18                                                                     <---------ARR14(2)      --------->ZAT14                                                                --------->ANAC58      <---------ZAT14                                                  <---------At4g35610--------->ARR14(2)      <---------ZAT18                                                  --------->At4g35610<---------- ---ARR14(2)                       <---------AHL20(2)               *TSS             --------->ANAC58 ----->WOX13(1)                   --------->AHL20(2)                <---------MYB52(1)   --------->GLK1(1) -->ARR14(2)<---------TOE2(3)  --------->CCA1(2)          <---------YAB1       <----------ID1 ------>ZmHOX2a(1) ->GLK1(1)<---------STY1(1) ----------->GT1        <------------CBF--------->At5g28300   <---------GLK1(1)   catcacagtccactagggtttttgagagactggatataaaatttgattttgttcattgttgtcattcgccgtaatctgaagaagacgaagcaaatcctcc  17097600                                                     <---------ANAC55(1)         ---------->DOF2                                                     <---------ANAC58          --------->At5g28300                                                     --------->ANAC55(2)   --------->DEAR3(1)                                                     <---------ANAC55(2)   <---------ALFIN1----------                                                     <---------ANAC58      ------------------>SPL14                              <---------ZAT18        <---------ANAC46      --------->AtMYB61      <--                              --------->ZAT14       <-----------------------TaNAC69(2)    ------>NtERF2                              <---------ZAT14     --------->ARR14(2)      --------->MYB46(3)      <--                          --------->YAB1          <---------ARR14(2)    --------->ANAC46 --------->LBD16                         <---------YAB1      --------->At4g35610      --------->ANAC46  <---------RAP2.6(2)                    <---------ZAT6           <---------ZAT2           --------->ANAC58 --------->SPL7 --------->DOF2   <---------ANAC58           <---------At4g35610      --------->ANAC58 <-------TEIL ------->RAV1(1)  <---------ANAC46           --------->ZAT2         <---------ALFIN1 <-----------HVH21 -ARR10           <---------ANAC58     --------->MYB52(1)         <---------ALFIN1 <---------------AtSPL3   cacaaagaatcatccatgggtcgtgttatcagagcacaacgtaagggagctggttccgtcttcaaatcccacactcaccaccgtaaaggtccggccaaat  17097700                                                                        <-------PIF5                                                                        ------->PIF5                                                                    ----------->HVH21                                                                  <---------HSFB2a(2)                                                                  --------->HSFB2a(2)                                                      ======================HOX2a_HOX2a               --------->LBD16                  <---------ANAC46<------ZmHOX2a(2)               <----              <---------LBD16                ----------->TGA1  <---------ARR14(2)  <---------MYB52(1)              --------->HSFB2a(2)       --------->ALFIN1   --------->YAB1--------->ALFIN1       <----              <---------HSFB2a(2)    --------->DAG2   <------ZmHOX2a(2)<---------ANAC58      <-------            <---------LBD16        ---------->DOF2   <---------ARR11(3)<---------ANAC46  <---------ANAC46 <------ZmHOX2a(1)               ----------->HVH21   --------->ARR11(3)<---------bZIP60(2) <---------REM1(1) ------->AGL2<---------LBD16   <---------At4g35610  --------->GLK1(1)  <---------ANAC58<---------ANAC58 ---------RAV1(2)         ----------->GT1    ----------->HVH21 --------->ARR14(2)--------->ATHB12<--- -------LBD16<---------ANAC46  --------->At4g35610  <---------GLK1(1)<------ZmHOX2a(1) <---------ANAC58   tcaggagtctcgatttcggggagagaaatggttatctgaaaggtgttgtgacggagatcattcacgatccaggacgtggtgctccattggctcgtgtagc  17097800         ------>ZmHOX2a(1)         <----------DOF2                      --------->At4g35610   <---------MYB52(1)                         <---------At4g35610  <-----------HVH21                         <---------RAP2.6(2)  <-----------TGA1                      <-------GAMYB --------->ANAC46                      <---------ANAC58 --------->ANAC55(2)                   <---------ANAC58 -----ANAC58                   <------ZmHOX2a(1)                               <-----------RAV1(1) -----ANAC58            --------->At4g35610<---------At4g35610            <----------DOF2 --------->ANAC58 --CCA1(2)  ----------------->AG   <----------DOF2                  --------->MYB52(2)    --------->ANAC58 -------DOF2----------------->AGL1 <---------DAG2                <-----------HVH21      ---------->DOF2   tttccgtcatcctttccgattcaagaagcagaaggagcttttcgttgctgctgaaggtatgtataccggtcagtttctttactgtgggaagaaagctact  17097900                                   ------>ZmHOX2a(1)                            ------>ZmHOX2a(2)                            ==============HOX2a_HOX2a                            ===================HOX2a_HOX2a                           <------ZmHOX2a(2)                           ===============HOX2a_HOX2a                           ====================HOX2a_HOX2a                          <-----------ARR10                          <---------ARR11(3)                          <---------ARR14(2)                          --------->ARR11(3)                          <---------AGP1                          --------->ARR14(2)----------->GT1                         <---------CCA1(2)<---------At4g35610           <------MYB46(1)                    ===============HOX2a_HOX2a          <---------ANAC46<------MYB83              ---         --------->GLK1(1)--------->AGP1  --------->At4g35610         <--------P   <---------ANAC46    <------NtERF2   ==============HOX2a_HOX2a <---------MYB52(1)    <-----------RAV1(1)          ----  <---------DEAR3(1)------>ZmHOX2a(1)   <------ZmHOX2a(1)--------->TOE2(3)    ------>ZmHOX2a(2)<-----   ctcgtcgtcggaaatgttcttcctctcagatctattcctgaaggagctgttatttgtaacgttgaacatcatgttggtgatcgtggtgttttcgctagag  17098000          --------->ANAC55(2)                                         --------------->AGL15       ---          --------->ANAC58                                            <---------------AGL15    ------          --------->ANAC46                                            <---------DAG2          <------          <---------ANAC55(2)           --------->ANAC46 ---------->ID1<----------DOF2       --------          --------->ANAC58        <---------YAB1        <-------GAMYB----------------->AGL1<---------YAB1     <---------MYB46(3)           ------>ZmHOX2a(1)    <---------MYB46(3)                  <---------WOX13(1) ------>GLK1(2)            ----------------------->TaNAC69(2)        ----------------->AG--------->ATHB12 ------------------->TaNAC69(2)   --------->LBD16      --------->MYB52(2)       <---------MYB46(3)<-- ----ARR11(3)     <---------YAB1--------->YAB1    <---------TOE1(2) <---------ARR11(3) <---------WOX13(1)   cttctggtgattacgccattgttatcgctcacaatcctgataacgacactagcaggtttgttgtattcaataccttttctggtgattcgattgattaatg  17098100  Previous    Next  AGI:  At4g36130.1    Description:  60S ribosomal protein L8 (RPL8C). Identical to 60S ribosomal protein L8-3 (RPL8C) [Arabidopsis Thaliana] (GB:Q42064;GB:Q7DLL7); similar to EMB2296 (EMBRYO DEFECTIVE 2296), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G18020.1); similar to unknown [Populus trichocarpa] (GB:ABK94183.1); contains InterPro domain Translation protein SH3-like (InterPro:IPR008991); contains InterPro domain Ribosomal protein L2, domain 3 (InterPro:IPR014726); contains InterPro domain Ribosomal protein L2; (InterPro:IPR002171); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-bind Range:  from: 17097568    to: 17098882    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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