Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ----------->GT1                              ----------->RAV1(2)                              <---------At4g35610        --------->ANAC46      <---------ZAT2        --------->ANAC58      --------->ZAT2        --------->ANAC58      --------->At4g35610    <-----------GT1       --------->ANAC46                   <-----------GT1 ------ZmHOX2a(1)         --------->ANAC58               <------ZmHOX2a(1)                   <------- ---->RAV1(2)             --------->ANAC58        <---------TOE2(3)  ---------->DOF2     --------->YAB1   gaggaattacaagccatttccaattcgcaagcagctgaaactgtggaaaatttagattaggaattacaacacaaaggagtagacaatgctatcaacatct  17011100                                                                         <----------DOF2                                                                 --------->YAB1                                                                 --------->ATHB12                             <---------TOE2(3)                  <---------ATHB12                  ---                            <---------DOF5.7(2)            --------->ANAC58                      <---   --------->ANAC46       --------->DOF5.7(2)              --------->ANAC46           <---------ICU4   --------->O2       ------>NtERF2--------->ICU4          --------->ANAC58           --------->YAB1   <---------O2       --------->LBD16             <-----------GT1<---------ICU4      <---------ATHB12 <-----------GT1     --------->ANAC46          ----------->GT1  --------->ICU4<-----------GT1<------- --ARR11(3)      <----------DOF2  <---------ARR11(3)--------->ZAT6--------->TOE2(3)--------->WOX13(1)   aattcacgagacttaactactttccgccattaacgagataattaagagattgttactctaaacgaaatcattagtcttttttactcaatcagtatataat  17011200                                                                         --------->YAB1                                                                  <---------ZAT14                                           <---------AHL20(2)     --------->ZAT14                                           <---------AHL20(1)     <---------ZAT18       <---------ZAT14                     --------->AHL20(2)     --------->ZAT18                ----   ------>ZmHOX2a(1)                       <---------ARR11(3)  <---------ANAC46               <------ --------->YAB1                            --------->ARR11(3)  <---------ANAC58               ------- ------>WOX13(1)                           --------->AHL20(1)  --------->ALFIN1       --------->ANAC46 ------ICU4                        --------->DAG2              <---------ANAC58       --------->ANAC58 --AHL20(2)                       ---------->DOF2            <---------ANAC46         --------->ANAC58   caatcctattacactgtatattgctaagtcttgctataaagcgaatatattgaatagatagcgatgtgtgcacattcaaaatcgaaacaagcaaataagt  17011300                                                                         --------->RAP2.3(3)                                                                         --------->DEAR3(1)                                                                         --------->RAP2.3(2)                                                                         --------->RRTF1(3)                                                                        --------->RAP2.3(1)                                                                        --------->ORA47(2)                                                                        --------->DEAR4(2)                                                                        <------NtERF2                                                                        --------->ERF1                                                                        --------->RRTF1(1)                                                                        --------->RAP2.6(1)                                                                       <---------ATERF1(1)                                                                       <---------RRTF1(1)                                                                       ------>NtERF2                                                                       <---------RAP2.6(1)                                                                      <---------DEAR3(1)                                                                      <---------ATERF1(2)                                                                      --------->ATERF1(2)                                                          <-----------HVH21                                                         ============================================MYC_MYB                                                         --------->TGA1a--------->ATERF1(1)                                                         --------->bZIP60(2)                                                         <---------ZAT2<---------RAP2.3(1)                                                         --------->ZAT2<---------ORA47(2)                                                         --------->O2 <---------RRTF1(3)                                                       <---------ALFIN1<---------DEAR4(2)       <----                                                       <-----------RAV1(2)------>NtERF2        ------                                                   --------->At4g35610--------->ALFIN1        <------       <---------------AGL15                    --------->At4g35610   <---------RAP2.3(3)    <-------GAMYB       --------------->AGL15                <----------DOF2           <---------RAP2.3(2)   <--------      ----------------->AGL1             <---------ARR11(3)       <-----------RAV1(2)       ---------     -------->P                          --------->ARR11(3)   --------->At4g35610          <---------AtMYB61    <-----------GT1               ----------->GT1 --------->DEAR3(1)  <---------RRTF1(2)   --------->ALFIN1 --------->MYB52(2)            <------NtERF2=======================bZIP_DOF        <---------MYB52(1) ----->ATHB12                <---------DEAR3(1) <---------At4g35610  --------->ATERF1(1) <---------ANAC46 ---ANAC55(2)       ===============================================bZIP_DOF<------NtERF2<---------DEAR3(1) -->ANAC55(2)       ---------->DOF2   --------->AHL20(2)--------->LBD16<---------ERF1  <---------LBD16   gattagttaccagtttgagagagaaagagagtcgtcgcgataaaatctttagcagccccaggtcagcctcaggcggcgccaaaacgttatgcggtggttg  17011400                                                                     --------->ANAC58 <---------DEAR3(1)                                                  ----------->GT1 -----WRKY18(1)                                                      --------->ANAC58 --->WRKY38(1)                                                   --------->ANAC58                   - ---WOX13(1)                           <----------DOF2           --------->ANAC58               <---- -MYB46(3)                     <-----------HVH21               ---------->DOF2<---------LBD16   ----- >MYB55(2)     <---------AHL20(2)<-----------GT1     <---------TOE2(3)    --------->DAG2   ----------   actacggcgatattggtttaattgttagaaaaatgtcactactttgtctgaaactagggtttagagaaagcaagaaaaattggggaagaagatgaaagtg  17011500                                                                                               <-----                                                                                               ------                                                                                              -------                                                                                             ------>MYB83                                                                                           ------->GAMYB                                                                                          --------->MYB46(3)                                                                                        <-----------GT1             ----------------->AGL1                     --------->ANAC55(2)          --------->ANAC55(1)             <-----------------AGL1           <---------YAB1                  --------->At5g28300   -   <-----------GT1                            <---------TOE1(3)              --------->TOE1(3)<------ -------->MYB52(2)                            <---------TOE2(3)              ----------->GT1 ------>MYB46(1) -----MYB46(3)        <-----------HVH21    --------->ICU4       ---------->DOF2      <---------ANAC55(2) ------>GT1 *TSS  --------->MYB52(1)       <---------ATHB51   <---------AHL20(2)     --------->ANAC55(2) >DOF2  <-----------ARR10           ---------->DOF2     <---------ANAC55(2)  --------->TOE2(3)-------   gttatttacgagtctacccataccggtgagacgattagtaaagaaattatggtttgataagtatttaaaagatgctaaaccgtaaacatgtaaccatcca  17011600        --------->DREB2C(2)        <---------ETT(1)        --------->DEAR3(1)        ----------->HVH21       --------->MYB46(3)       --------->DEAR3(2)                                --------->YAB1     <---------ARR14(2)                                <-----------HVH21     --------->ARR14(2)                               --------->WOX13(1) ----------AGL15                                  --------->YAB1 --------->AGL15                                  <---------ICU4 ---------->AGL2                                 <---------YAB1 --------->DOF2      ----------------->AGL1    <---------ICU4 -----------AGL3    <-----------------AGL1     --------->YAB1                                       - ---------->AGL3    ---------->ID1           --------->GLK1(2)                      <----------DOF2 <   ttaaaaggaaccgacaagttttgtccaatttgggagcaatagaagagaatcatcatcagtcatatcaattttgtcaatgttttaggctttttagtcatgg  17011700                                                                                   -------->P                                                                                   ------>MYB83                                                                                   ----------->RAV1(1)                                                                                   --------->MYB52(1)                                                                                  --------->ANAC46                                                                                  <---------ALFIN1                                                                                  --------->MYB55(1)                                                                                 --------->MYB46(3)                                                                                 --------->DEAR3(1)                                                                                 <---------MYB111(2)                                                                                 <---------MYB55(2)                                                                           <---------ICU4                                                   ------>ZmHOX2a(1)     <---------YAB1                                                  --------------->AGL15 --------->YAB1--------->ANAC58             <-------TEIL                         <---------------AGL15 --------->AHL20(2)           ------->MYC3                           --------->TOE1(3)     <---------AHL20(2)           <-------MYC3                      --------->HSFB2a(1)      <---------AHL20(2)        <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    --------->TOE2(3)   --------->AHL20(2)   <-----------GT1                <<<<<<<<<TBF1<-----------GT1        <---------YAB1  --------->ANAC46 --------->YAB1         <---------CCA1(2)    <---------HSFC1(2)      --------->TOE2(3)--------->ANAC58 -------->HAHB4  --------->ARR14(2)          <---------HSFB2a(1)     --------->YAB1------>MYB46(1) -------->ICU4   <---------ARR14(2)    ---------->DOF2         ----------->GT1  --------->ANAC46 ---------YAB1 ------->TEIL <----------DOF2  --------->HSFC1(2)--------->YAB1 <-----------GT1   taatgatacctcacatgcatttcttcatctcttttcttcttcaaagaattttccttaatttgctattgtaatattaatattcacccaccagcaaattgta  17011800                                                                               ------>MYB46(1)                                                                               ------>MYB83         <                                                                             --------->TOE2(3)      -                                                                             <---------MYB59 <-------                                                                      ----------->GT1      ----------                 ---------->DOF2                     <------MYB46(1)  --------->LBD16  <---------ARR14(2)             --------->YAB1                          <------MYB83 <---------SPL7       --------->ARR14(2)            <-------TEIL                            --------->MYB59 <---------LBD16   <---------CCA1(2)   tatgttctccttgattcataaaagaaaactactattttgacccaaaacacaagtttggttcaattggccatccggtaaacctaataccctatcttgtgat  17011900 ----------->GT1                         ----------->RAV1(1)                          --------->TOE1(2) ---------TOE2(3)                       --------->ANAC46             --------->ARR14(2) -------->DAG2                        --------->ANAC46               --------->GLK1(2)--------->TOE2(2) --YAB1            <---------MYB52(1) --------->ANAC58               <---------ARR14(2)  --------->ANAC46 ->GT1    --------->YAB1              --------->ANAC58       <---------TOE2(3)     <-----------GT1   aaaaggttgaaataagaattagttagtctatatgtgatacacacaacacaaattgctgaaattaagatgagaatcccaaactaatttacatacgactcca  17012000  Previous    Next  AGI:  At4g35910.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO23594.1); contains domain SSF52402 (SSF52402); contains domain PTHR20882:SF1 (PTHR20882:SF1); contains domain PTHR20882 (PTHR20882) Range:  from: 17008570    to: 17011512    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35920.1    Description:  MCA1 (MID1-COMPLEMENTING ACTIVITY 1). similar to MCA2 (MID1-COMPLEMENTING ACTIVITY 2) [Arabidopsis thaliana] (TAIR:AT2G17780.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43166.1); contains InterPro domain Protein of unknown function Cys-rich (InterPro:IPR006461) Range:  from: 17011791    to: 17015259    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version