Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->ATHB12      <---------------AGL15                          <---------AHL20(2)      --------------->AGL15                 --------->AHL20(1)     <-----------------AG              --------->AHL20(2)     <-----------------AGL1          <---------HSFB2a(2)     ----------------->AGL2          --------->HSFB2a(2)     ----------------->AGL1       ------>ZmHOX2a(1)  --------->AHL20(2)  <---------ARR14(2)         <-----------GT1<---------ARR11(3)                                      <  ------->TEIL             <---------AHL20(2)       --------->AHL20(2)                         ------  --------->ARR14(2)       --------->AHL20(2)   <---------YAB1                                 <----- <---------CCA1(2)      --------->ARR11(3)  <---------AHL20(1)           <---------ANAC55(2)  <------ ----ARR14(2)           <---------ARR11(3)  --------->ARR11(3)         --------->AHL20(2) ----------- --->ARR14(2)          <---------RVE1(1)   <---------AHL20(2)      <---------YAB1     <---------AHL20(2)   actgtatccctgatttggaaaacagagattttaatccttctataaatattttcatttatttgcaatcttacaattacatatgttttatataatggtatat  16996700                                                                                               <----- --------->YAB1                                                                            <---------AHL20(2) ---------YAB1                                                    <---------LBD16          --------->AHL20(2) --->ARR11(3)                              --------->ANAC46 <-----------GT1               <---------AHL20(2) ----ARR11(3)                        --------->WRKY38(1)  <-----------GT1         <---------ANAC46 ---CCA1(2)  <---------AHL20(2)      --------->WRKY12<---------ANAC58    <---------DAG2   <---------AHL20(1) >GT1        --------->AHL20(2)      --------->WRKY45<---------ANAC58    <----------DOF2  --------->AHL20(2)   ctattatagtataatataaattcaaaattaagtcgaaagttgaccacataacttagcgtttttctctcttcggaacttttttttttgtgtaatttaattt  16996800                        <---------AHL20(2)          --------->AHL20(2)                                                     <---------YAB1          <---------AHL20(2)                                               <---------AHL20(2)         --------->AHL20(2)             ----------->HVH21                <---------CCA1(1)         <---------AHL20(2)     <---------AHL20(2)                       <---------RVE1(1)         --------->AHL20(1)     --------->AHL20(2)                      --------->ARR11(3)         <---------AHL20(1)    --------->AHL20(2)                       <---------GLK1(2)        --------->AHL20(2)  --------->ATHB12     <---------AHL20(2)     <---------ARR11(3)  ---------   <------ZmHOX2a(1)   <---------AHL20(2) ---------->ID1   --------->AHL20(2) <---------AHL20(2) ----AHL20(2)          --------->AHL20(2)<---------WRKY18(1)    ---------->DOF2<---------AHL20(2)   <   atacaggaaaattaatttaggggaaataaatgatttaattgtttgacctattttaagagaattaaaaaaagaaagatttttttatttttgtgaaaagatt  16996900                                                                               --------->MYB46(3)                                                                               <---------MYB55(2)                                                                              -------->P                                            ------>ZmHOX2a(1)                 ------>MYB46(1)                                      --------->MYB46(3)                      ------>MYB83                                 --------->TOE1(3)                --------->YAB1------->GAMYB                                 <-----------TGA1                <---------ATHB12              --------->At5g28300--------->TOE2(3)             --------->WOX13(1)---------->DOF2   <---------CCA1(2)            --------->ANAC46      <---------DAG2       --------->MYB46(3) >ICU4       ----------->GT1  <---------DOF5.7(2)     <----------DOF2  <-------TEIL ------ZmHOX2a(2)            <---------WRKY12    <---------MYB52(1)  <---------GLK1(2)      ---------   agatcaaatcttacatggtaattttctaatgtcaacgtcaacaatcctgccattagctttttggccaatcagattcatccaaccaaagaaaaacaaaagt  16997000                                                                               XXXXXXXXXXXXXXXXXXXX>MIR837-3P                                                            --------->ANAC58  --------->ANAC58                                                            --------->ANAC58  --------->ANAC58                                                            ----------->GT1   ----------->GT1                                                      <--------P            --------->MYB52(1)                                                  --------->LBD16           ------>MYB46(1)            <---------ANAC46                      <---------LBD16           ------>MYB83        -----        <---------ANAC58         ----------->GT1<---------LBD16           --------->AtMYB61--------->MYB52(1)     <-----------GT1     ----------->GT1      <---------ARR14(2)        ------------------------>ANAC81 ->DOF2 <---------ANAC58 --------->YAB1       --------->ARR14(2)    --------->AtMYB61 <----------ID1   gtgtttttttccttgtgtttacttcaagggtaatttagtaacttctaatatccgcggtagccaagtaaaaccaaaaccaaacgaaaaaaaaacaaatgga  16997100                                                                       --------->ZAT14             <-                                                                       --------->At4g35610      <----                                                                   <---------ALFIN1         <--------                        ---------->DOF2                           --------->ZAT18          --------->HSFB2a(2)        <---------AHL20(2)                                        <---------REM1(2)        <---------HSFB2a(2)       --------->AHL20(2)                                         <---------ZAT14        ----------->RAV1(2)      ----------->TBP   --------->MYB52(1)                        --------->ZAT14       ------>ZmHOX2a(1) ----->DOF2      --------->AHL20(2)       *TSS              <------ZmHOX2a(1) --------->YAB1---------   aagaacatataaaatcgaataaaaaataaaggagagagagagagagagaagagaagagaagaggagactacactgctccatcatcttctccttctgggga  16997200                                 <-----------GT1       --------->TOE1(3) --------AHL20(2)         <----------DOF2              --------->TOE2(3) -----ARR14(2)           <---------DAG2               --------->ZAT6 -LBD16               <-----------GT1            --------->TOE1(3) >LBD16              <---------MYB52(1)          --------->TOE2(3)   tttttttttggaaaaatcgttctgttaccttttttttgcccattactcaaaccctaaccctaattttctgaaatcgcagagagagagagagagaggtttc  16997300                                                               <---------AHL20(2)                                                               --------->AHL20(1)                                                               --------->AHL20(2)    <---------At4g35610                                                               <---------AHL20(1)------>ZmHOX2a(2)             --------->TOE2(3)           <-------GAMYB    <---------MYB52(1) <---------ETT(2)            --------->YAB1              ----------->GT1  --------->TOE2(3)   --------->ETT(2)            <---------ICU4     ---------->ID1           --------->YAB1--------->ARR11(3)         --------->YAB1    <----------DOF2              <---------ICU4<---------GLK1(2)   ttcgaattctttcatcatcaattcgctaactttgtttttttggggttaaatcgattaatcgttattttattagatactgtcgatcggagctaatcgactc  16997400                                                                                                    -                                                                                                    -                                         ------>NtERF2                                              -                                         --------->LBD16                                           <-                                        --------->ANAC46                                    ---------                                        --------->ANAC58                                  <---------LBD16                <---------AHL20(2)      --------->ANAC58                                  <---------At4g35610                --------->AHL20(2)    <---------ATERF1(1)                                 --------->At4g35610          --------->TOE1(3)          <---------SPL7                                   <-----------HVH21          --------->TOE2(3)         <---------ANAC58                                  --------->ARR14(2)     <---------MYB52(2)             <---------ANAC58<---------ATHB12             <-----------HVH21 --     --------->MYB46(3)   ------>ZmHOX2a(1)<---------ALFIN1      <<<<<<<<<TBF1 ------>ZmHOX2a(1)  ---   tctcttaacaaaccctaattttttggtcctctctcatggcttccgccacttccaataaccctgcttcttcttctatgtctcctcgtcgtatcagcgggaa  16997500                                                                                         --------->YAB1                                                                                       <-----------ARR10            --------->DEAR3(1)                                                     ------>NtERF2            <---------ALFIN1                                                       <------NtERF2          ------>NtERF2                                                            --------->At5g28300         <---------ALFIN1                                                         --------->LBD16        --------->MYB46(3)                                                        ------>NtERF2      --------->PCF2                                                            <---------LBD16     <---------ATERF1(1)                                                        --------->LBD16     <---------At4g35610                                                        --------->ATERF1(1)     --------->At4g35610                                                        <------NtERF2     <------NtERF2                                               --------->WRKY12<---------DEAR3(1)    <---------ATERF1(1)                            <------MYB46(1)             <---------ATERF1(1)  < -------->ANAC46                                 <-----------RAV1(2)        <-----------HVH21     <-- -------->ANAC58   --------->LBD16              <------NtERF2    <---------ZAT18<---------At4g35610-- -------->ANAC58  <---------ANAC58        ------>ZmHOX2a(1)      --------->WRKY38(1)   --------->GLK1(2) --------LBD16    --------->ANAC55(2) --------->ORA47(1)         --------->ZAT14--------->At4g35610== >LBD16 <---------ABI4(2)             <---------RAP2.6(3)     <---------ANAC46<---------DEAR3(1)  === ------->RAP2.6(3)<---------ANAC58    ------>NtERF2<------MYB83--------->LBD16--------->SPL7     <--- ------>MYB52(1)  <---------ANAC46   --------->DEAR3(1)      <---------LBD16<---------SPL7       ----   tcacggcagccccaccgcttccgtagcacaatcacctcgccgtccttctcggcaggtttcttctccgtggactcaaatcgtccgcggcgaatcagagccg  16997600  Previous    Next  AGI:  At4g35890.1    Description:  La domain-containing protein. similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G66100.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23265.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR006630) Range:  from: 16997142    to: 17000836    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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