Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               --------->DAG2                                                                      --------->ATHB12                                                                   <-------GAMYB                                                                  --------->ALFIN1                                                                <---------ANAC46            <---------LBD16                                   <---------ANAC58            <---------ANAC55(2)                               <---------ANAC46           <---------LBD16                                    <---------ANAC58 ---------RAV1(2)                --------->MYB46(3)     --------->ALFIN1<---------WOX13(1) --->MYB46(3)          --------->ARR14(2)               <-----------RAV1(1) ---------->DOF2       <-- >TEIL<---------AHL20(2)      <---------ZAT14     <---------HSFB2a(2)<---------YAB1         <-------TEIL   acaggtttttaatcacgggaagcagtatcgactgaacaactactacaaaattctacaagtgttgtcgtgtgttgattgaaaagtgtttttgaaattcgtt  16983100                                                                                                   --                                                                                                   <-                                                                                                -----                           --------->AHL20(2)                    --------->ANAC58               <----                           <---------AHL20(2)                    --------->ANAC46              <-----                      <---------YAB1                             --------->ANAC58              <-----                <-------MYC3                                   ---------->DOF2                 ------                <-------MYC2                                   ======================================                ------->PIF5                                   --------->MYB52(1)              ------                ------->MYC3                    <---------WRKY38(1)                            ------                <-------PIF5      <---------TOE2(3)         <---------ANAC55(2)                ------                ------->MYC2    ---------->DOF2--------->WRKY18(1)       <----------ID1        <----- ---------------AGL1<----------DOF2      <----------DOF2    --------->ANAC55(2)             <--------   ttcgaaaatggaattgcacgagctttgattaaaataaaggtttcttttggtcaatagttctcacttaacgcaagaagaacaaatattagttgtcttcacg  16983200                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                                                                                              <------                                                                                              <------      ----------->RAV1(1)                                                                     -------     <---------ETT(1)                                                                         -------     ----------->HVH21                                                                        ------- ------>ZmHOX2a(2)                                                                            ------- ------->ARR11(3)                                      --------->ARR11(3)                     ------- --------ARR11(3)                                      <---------ARR11(3)                     <------ -->MYC3                                               <---------AHL20(1)                     <------ ---MYC3                                            --------->YAB1                           <------- ----ANAC55(2)                                   --------->YAB1                              -------- ----O2                                   <---------ALFIN1                                   <------- --->ANAC55(2)                     <----------TaMYB80 --------->CCA1(1)                      -------- ====bZIP_DOF                      --------->GLK1(1)<---------ICU4   <---------ICU4          -------- --->ANAC46                        <---------GLK1(1)--------->AHL20(2)  <---------ICU4       -------- --->O2               --------->AHL20(2) --------->LBD16  <----------DOF2         <<<<<<<<<TBF1------ --->TGA1a            <---------AHL20(2)--------->ANAC46  =========================================== ----TGA1a            <---------YAB1--------->KAN4(2) --------->RVE1(1)<---------YAB1        ======== -REM1(2)    <-------TEIL <---------AHL20(2)  ----------->GT1        --------->YAB1       <-------TEIL   tgatcttccgacagattcaaagttttaattagttgggacatcccccaactgtaataatatctttttctccatcatcatcgtttcttcttcggtacacgtg  16983300     <-------MYC2     ------->MYC2     <-------PIF5     ------->PIF5    --------->bZIP60(2)    <---------TGA1a    <---------O2    <---------ANAC55(2)    --------->TGA1a    <---------ANAC46    --------->O2  <---------ALFIN1                 --------->DOF5.7(2) ------NtERF2                     <-----------HVH21 -------->At4g35610               --------->TOE2(3) ---------------->PIF3(1)     --------->YAB1 ---------At4g35610      <-------MYC3 -MYC2                   ------->MYC3 -MYC4                   ------->MYC2 >MYC4                   <-------MYC2 ->ABF1                  ------->PIF5 >PIF5                   <-------PIF5 >MYC3                  <---------TGA1a >MYC2                  --------->bZIP60(2) -PIF5                  --------->TGA1a -MYC3                  <---------O2  <---------At4g35610 --TGA1a                --------->O2<---------WRKY12 ->O2------->MYC3       <---------ANAC55(2) --O2<-------MYC3       --------->ANAC55(2) ->ANAC46               --------->ANAC58 ->ANAC55(2)            --------->ANAC58 ->TGA1a  --------->MYB46(3) <---------YAB1 --->ALFIN1           <------------OsbHLH66--------->ARR14(2)        <---------ATHB12 ==bZIP_DOF<---------ALFIN1 <---------ARR11(3)                      <-----------HVH21          <----- =============bZIP_bZIP --------->ANAC46   <---------ARR14(2) <---------ATHB12       <---------ZAT18   gcagccacgtgaaccactcgatagccacgtgatcatcgtcaactggttctgcatattaagcccaataacccatcaaggcccatacagtgagcataagctt  16983400                                            ------>ZmHOX2a(2)                                           <------ZmHOX2a(2)                                          <---------ARR11(3)                                          --------->ARR11(3)                                          --------->ARR14(2)                                          <---------ARR14(2)                                          <---------AGP1                                          --------->AGP1                                      <---------MYB52(1)                                     <-----------HVH21                                          <----                         ----------->GT1----------->ARR10                                  --------->At4g35610               <---------AHL20(2)   --------->LBD16            <---------YAB1              <---------At4g35610         <------ZmHOX2a(2)         --------->LBD16         <----------DOF2                 --------->ZAT2        --------->ARR14(2)        <---------LBD16        --------->LBD16                   <---------ZAT2        <---------ARR14(2) <---------MYB52(1)          <---------LBD16         ----------->RAV1(2) -----DOF2    --------->AHL20(2) --------->MYB52(1)  <-----------GT1--------->KAN4(2)------>NtERF2   ttaaaattccgatccattaaatcaaaccggttaactcccggttagatctgtatattttccggtttatgtttattccctaaaccctgaggcctgagctgat  16983500                      --------->ARR14(2)                      <---------ARR14(2)                  <---------LBD16                  <------NtERF2                 <---------ATERF1(1)                 ------>NtERF2                <---------ATERF1(2)                --------->ATERF1(2)                <---------DEAR3(1)                <---------RAP2.3(3)                                                 <---------ANAC58               --------->SPL7                                                       <---------ANAC58             ----------->HVH21                                                  ---------->DOF2      <----------DOF2<------NtERF2                                            <------NtERF2      ------>ZmHOX2a(1)--------->GLK1(1)                                     --------->LBD16  <-----------GT1<---------RAP2.3(1)       ------>ZmHOX2a(1)                --------->LBD16   <------ -----YAB1<-----------GT1   *TSS<-----------GT1             --------->LBD16<---------LBD16    <------   gatatatccttttttccgacggcggaactcgattatacagttttcctctctctcactctctccgtagtctgagactcgccggaaaagcttgtattggctt  16983600                                  <---------At4g35610                                  --------->At4g35610                              ------->MYC3                  <---------ARR14(2)                              <-------MYC3                  --------->ARR14(2)                             <---------ANAC46            --------------->AGL15                             <---------O2                <---------------AGL15                             <---------ANAC55(2)        ----------------->AGL1                             --------->O2               ----------------->AGL3                        --------->GLK1(1)               ----------------->AGL2                        <---------GLK1(1)               <-----------------AGL2                       --------->ARR11(3)               <-----------------AGL3                       <---------ARR11(3)         --------->ANAC58                         <---------O2                    <---------TOE2(3)      --------->ARR14(2)                             ------>ZmHOX2a(1)              <------NtERF2  --------->ANAC55(2)  --------->AtLEC2               <----------DOF2     <---------GLK1(1)<------ZmHOX2a(1)    <---------ARR14(2)  --------->HSFB2a(2)        =========== ---ANAC58  <---------ANAC46 --------->TGA1a      --------->ANAC58             ------->TEIL--------->O2 ---ANAC58 <---------LBD16   <---------TGA1a   ------>ZmHOX2a(1)       <----------DOF2    ===========   ctcttcgatttctggcggaagtaaggatatcacgtgagctatgaagttcctcatgcaatccatttctggtatgcttttatggacttttcatcctcgtgac  16983700                        <-----------HVH21                     <---------At4g35610        <---------YAB1                     --------->At4g35610     ------>ZmHOX2a(1)            ------>ZmHOX2a(1)                    ------->TEIL      <----------DOF2                    --------->TOE2(3)          ------>ZmHOX2a(2)          ===============HOX2a_HOX2a        ---------->ID1         <------ZmHOX2a(2)           ------>ZmHOX2a(2)              <-------TEIL             --------        --------->ARR11(3)         --------->ARR11(3)         --------->ZAT18           <---------YAB1        <---------ARR11(3)         <---------ARR11(3)         <---------ZAT18     --------->MYB52(2) ================HOX2a_HOX2a   ------->TEIL  <----------DOF2  --------->ZAT14  --------->TOE2(3)----- ===============HOX2a_HOX2a <---------YAB1---------->ID1      <---------ZAT14<---------TOE2(3) <-----   taactagatagatcccattttgcatctgtcatgaatcgatctttatccttttgattcaatcgactgcacattcgtccttaatgttagtttttgattcgac  16983800                                                                                                  <--                                                                                                 ----                                                                                                <----                                                                                               <-----                                                                           ---------->DOF2     ------                                                                     --------->GLK1(1)         ------                                                                   ==================================                                                                   <------ZmHOX2a(1)           <-----                                                                   ==================================                                                      <----------DOF2<---------GLK1(1)        -------                                             <---------MYB52(1) <---------------------WRI1   --------         ===============HOX2a_HOX2a         <----------DOF2     <------NtERF2              ------>NtERF2         <------ZmHOX2a(1)                <------NtERF2        --------->LBD16            --------->DEAR3(1) --->HVH21       ------>ZmHOX2a(2)       <---------ORA47(2)   --------->DEAR3(1)       --------->ANAC58 ---->ANAC46    <---------GLK1(1)       <---------RAP2.3(3)  <---------LBD16           --------->ANAC46 ----LBD16<---------ARR14(2)            <---------DEAR3(1) --------->DEAR3(1)          --------->ANAC58   ggaaacagggaggaatcgatctctggttcgagctctagttagtcggcgttacttcgcttcatcgccggaggaaatcgcaaagagaaattacgccaacgat  16983900 --------->ETT(1)                <---------At4g35610 ---------RAV1(1)                --------->At4g35610 -->ZmHOX2a(2)                   --------->ZAT2 --ZmHOX2a(2)               ----------->HVH21 ----ARR14(2)             --------->ANAC46<---------TOE2(2) --->ARR14(2)         --------->At4g35610 <---------TOE1(2) --->ARR11(3)         <---------At4g35610<-----------RAV1(2)                                       -- ==HOX2a_HOX2a    <-----------HVH21   <---------At4g35610                                         <-- ----ARR11(3)  --------->At4g35610    --------->At4g35610                                        <--- ===HOX2a_HOX2a<---------At4g35610  ---------->CDC5          --------->ATHB12                    ---- >GAMYB       --------->DEAR3(1) <---------ZAT2     <-----------GT1                             ----- ->MYB46(3)<---------ALFIN1<-----------HVH21       <-----------GT1                        --------->ALFIN1   ctgtcggaatacaacaccgctgtcaactccgtcacagctcagcgcaggtttattttccccccttgatttgtattgctcattgtgttcagaacatgggggg  16984000  Previous    Next  AGI:  At4g35850.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G02150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14668.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16983528    to: 16986970    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version