Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------ZAT2           <---------ARR14(2)                                                  --------->At4g35610      --------->ARR14(2)                                                  <---------At4g35610    --------->LBD16                                          <---------ANAC58               --------->ANAC46           <<<<<<<<<TAC1           <-------TEIL   --------->ZAT2         ----------->HVH21         --------->ZAT6        <---------YAB1   <---------ZAT18         --------->LBD16    <---------ANAC55(2)    <---------DDF1 <---------ANAC58              <---------HSFB2a(2)    --------->ANAC55(2)   --------->DREB2C(2)  <---------ANAC58        <---------LBD16 --------YAB1            --------->DEAR3(2)    <---------ANAC58     <-----------HVH21     <----------   catgatacttaacactgtcttcataaaaccgacatgatacattggcttagcgagctcaagatagccaaaatgtcccggacactcagccatattagccata  16967500                              ----------------->AGL1                              ----------------->AG                              <-----------------AGL1    <---------ALFIN1                           <---------SPL7               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------ATHB12                  <---------MYB55(2)                     <------ZmHOX2a(2)  <---------GLK1(1)            <-----------------AGL1                ------>MYB46(1)     <---------ANAC46 ------>ZmHOX2a(1)        <-----------HVH21           <-----------GT1--------->YAB1--------->GLK1(1)  <---------DAG2  --------->HSFB2a(2)        --------->ANAC46 <---------ATHB12    --------->ANAC58       <-----------GT1 ---------->ARF1------>MYB83 --------->SPL7  --------->ANAC58      <-----------GT1 -GT1 <---------ALFIN1 --------->WOX13(1)   --------->WOX13(1)<---------TOE2(2)          --------->ZAT14   catgtctcacacttcaccttccgatcaatcgtaccaagacgggtatcactcaatcctcccaccttaggtttacccttctcggtcgtctcactatgctcaa  16967600                                                                                  <------ZmHOX2a(2)                                                                    <---------At4g35610                                                                    --------->HSFB2a(1)                                                                    <---------HSFC1(2)                                                                    --------->HSFC1(2)                                         --------->MYB46(3)   <---------ANAC58   <---------ARR11(3)                                        -------->P            <---------ANAC58   --------->ARR11(3)                             --------->ANAC58             <---------ANAC58     <---------YAB1                             --------->ANAC58           <---------ARR11(3)   --------->YAB1       ------->GAMYB       ---------->DOF2 ----------->GT1<---------ANAC58  <---------ATHB12  -------   catgtataacagacatttgcctctgaaaaaaaagccattagcaaccagtgaaactcaatttcttacttgaagcttccaattaagatcaatagatagaaaa  16967700                                                 <---------At4g35610                                                 --------->ZAT2                                                 <---------ZAT2                                                 --------->At4g35610      ----------------->AGL2                                             <---------ATERF1(1)         ------->TEIL                                             <-----------HVH21  <------NtERF2                                             ------>NtERF2     --------->LBD16                                             --------->LBD16  <---------DEAR3(1)                                            --------->ANAC58  --------->ALFIN1                                            --------->ANAC46 --------->ATERF1(1)                                            --------->ANAC58 <------NtERF2----------------->AGL1                                           <---------LBD16  <---------ORA47(2)                                       <---------ARR11(3)   <---------RAP2.3(1)                    ------>MYB46(1)    --------->ARR11(3)  <---------RAP2.3(3)            ---------->DOF2                    ------>MYB83--------->AtLEC2------>NtERF2<---------LBD16        ---------->DOF2        <---------MYB59<-----------GT1 --------->ARR14(2)  <---------DEAR3(1) ---------->DOF2 --->DOF2          --------->WOX13(1)  <---------ARR14(2)--------->MYB52(1) ----------->HVH21   -----   gaacatgctccctaactaaaccaatctactattcatgccaatatccccgccagctaaacagacggcggagcaatggacctgaaagagaaagagaaagaga  16967800                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                <<<<<                                                                                                <<<<<                                                                                                <<<<<                                                                                                <----                                                                                                <----                                                                                                <<<<<                                                                                               <-----                                                                                               <-----                                                                                               <-----                                                   <----------DOF2         --------->ANAC58    <-----                                               --------->LBD16             --------->ANAC58    <-----                     <---------At4g35610     <---------LBD16             --------->MYB52(1)   -------                     --------->At4g35610    ------>MYB83            <------NtERF2      <---------ARR14(2)                     <---------ZAT2         ------>MYB46(1)        <------NtERF2       --------->ARR14(2)                     --------->ZAT2       <---------ALFIN1         --------->LBD16    <---------CCA1(2)            ------>ZmHOX2a(2)             --------->AtMYB61      <---------LBD16    --------->TOE1(1)          --------->ARR11(3)             --------->MYB46(3)     ------>NtERF2       --------->TOE2(1)          <---------ARR11(3)           <---------PCF5         --------->TOE1(1)--------->GLK1(1)<<<<< ----->DOF2<------ZmHOX2a(2)   ----------------->AGL1     --------->ARR11(3)   <---------GLK1(1)-----   aaggagcattacgatctcatcggggctgagtatgccaaactggaccacccggactttagagacctcggccggagagaacggaaacctcgtatccatggcg  16967900  <---------ZAT2  --------->At4g35610  --------->ZAT2  <---------At4g35610 ----------->ARR10 ----->At4g35610 ------At4g35610 ---NtERF2 <<<<AtERF-4 <<<<AtERF-3 <<<<AtERF-2 -----ERF1 -----RAP2.3(1) <<<<AtERF-1 ----DEAR3(1)                                                             <-----------GT1 ----ANAC46---------->DOF2                                              <---------AHL20(2) ----RAP2.3(3)                                       --------->DAG2     --------->AHL20(2) ----RAP2.3(2)                                    <---------AHL20(2)--------->AHL20(2) ----RAP2.6(2)                                   <---------AHL20(2) <---------AHL20(2) -->RAP2.6(3)                                    --------->AHL20(2) --------->AHL20(1) <<<<AtERF-5         --------->YAB1       ----------->GT1    --------->YAB1      <----------DOF2   -- ->NtERF2<------ZmHOX2a(2)              <<<<<<<ZML2---------->DOF2 --------->AHL20(2) ------------>CBF   gctaagctccgatcaaagacgaatcaaaaatcgaaaaccctagaacgtgaattaaaaggggaatcaaaaattaattaaaccctcttttgccaatttgttt  16968000                                                                                         --------->GLK1(1)                                                                                     --------->HSFB2a(2)                                                                                     <---------HSFB2a(2)                                                                                    ------>ZmHOX2a(2)                                                                                    =================                                                                                   ==================                                                                                   --------->CCA1(2)                                                                                   <------ZmHOX2a(2)                                                                                  <---------ARR14(3)                                                                                  --------->AGP1                                                                                  <---------AGP1=====                                                                                  --------->ARR14(3)                                                                                  <---------ARR14(2)                                                                                  <---------ARR11(3)                                     <---------DAG2                               --------->ARR11(3)                              --------->At4g35610                                 --------->ARR14(2)                              <---------At4g35610      <-----------GT1           <---------CCA1(2)                         <---------ANAC58              ---------->ID1           ----------->ARR10 <--                         <---------ANAC58     <---------MYB52(1)              ----------------->AGL1                         <---------ANAC46 <-----------GT1                     ----------------->AGL2                         <---------ANAC55(2)<---------ANAC58                  <-----------------AGL1                         --------->ANAC55(2)<---------ANAC58               --------->ANAC58     -----                      <---------MYB52(1) <-----------GT1                   --------->ANAC58     ----- ----->TEIL     <---------ZAT14      <----------DOF2  <-----------GT1 ----------->HVH21  <---------GLK1(1)   gaatctgtgagtcagtagtttacagttacttgagctaaacttttttccgttttttttttccctctctgggttttgacacgaccagatctggaattctctc  16968100                                                                           --------->At4g35610                                                                           <------NtERF2                                                                           <---------At4g35610                                                                          <---------ERF1                                                                          <---------RAP2.3(1)                                                                          <---------ATERF1(1)                                                                          ------>NtERF2                                                                          <---------ORA47(2)                                                                         <---------RAP2.3(2)                                                                         <---------RAP2.3(3)              --------->CCA1(2)                                          <---------RAP2.6(2)          <------ZmHOX2a(1)                                  <---------HSFB2a(2)   <---------REM1(2)                                         --------->HSFB2a(2)                 <--- ================HOX2a_HOX2a          <------ZmHOX2a(2)    <---------AHL20(2)                   ----- ================HOX2a_HOX2a   --------->CCA1(2)       --------------->AGL15           <---------ZAT14 ====================================bZIP_DOF         ----------------->AGL3       <---------ARR11(3) -------CCA1(2)           ---------->DOF2             <-----------------AGL3       --------->ARR11(3) ---->O2  ===================================HOX2a_HOX2a <-----------TBP <---------DEAR3(1) --------- ---->TGA1a   --------->At4g35610    --------->ARR14(2)<---------------AGL15   ---------->DOF2  -----   gtctcttcacgaggagagatgaatgagcaaaagaaacacgatccatgccctaagcctctatttatagaaaaataggcggctcaaaggtctgttctggtta  16968200                                                  --------->ZAT18                                                 <---------DEAR3(2)                                                 ------>NtERF2                                                <---------DEAR3(1)                                               --------->ATERF1(1)           <-----------HVH21                  <-----------HVH21          ------->GAMYB                      <---------ANAC46       --------->ALFIN1     --------->At5g28300                   <---------ATERF1(1)     <-------MYC3                 <----    <----------DOF2                      <---------ANAC58          ------->MYC3                 ----- ---------CBF                            <---------ANAC58         <---------ANAC55(1)           <---- ---->ATHB12                       --------->MYB52(1)      ---------->DOF2                  --------- -->GT1  <------------AtMYB77      <-----------GT1<------NtERF2   --------->ANAC55(2)      <---------YAB1 ---->MYB52(2)        ----------->GT1 ------->GAMYB   ----------->HVH21<---------REM1(1)<XXXXXXXXXXXX   attgggctgtaactgtctcaggcccagttaaacggattaacgggcctgcgtcggcactgaccaaagaaacgtgttgtaacgaagaatgctagtaagattg  16968300                  <---------WRKY38(1)               <------MYB46(1)               <------MYB83                               --------->LBD16                   <--------             <---------MYB52(1)           <---------GLK1(1)                               --------->TOE2(3) --MYB83  <-----------RAV1(2)             --------->GLK1(1)                   ---------->DOF2-------- ------>GT1 <---------At4g35610          <---------ARR11(3)                --------------->AGL15 --MYB46(1) <-------GAMYB                --------->ARR11(3)         <---------GLK1(1)    ----------->GT1 >ATHB12 <-------TEIL              --------->YAB1     <-----------GT1      <---------------AGL15   <- XXXXXXXXMIR844* --------->WRKY18(1)   <---------TOE2(3)  <-----------HVH21==========================   gtttatatcggttcagttggtcaaaccgatatatcaaaaataagatttcttcttattttccgtcaaatagatttcttcttaaaagagcaaaacgataata  16968400  Previous    Next  AGI:  At4g35800.1    Description:  NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase. Identical to DNA-directed RNA polymerase II subunit RPB1 (RPB205) [Arabidopsis Thaliana] (GB:P18616;GB:P31635;GB:Q9SZS8); similar to NRPC1 (nuclear RNA polymerase C 1), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G60040.1); similar to hypothetical protein OsJ_016390 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32907.1); similar to putative RNA polymerase II [Oryza sativa (japonica cultivar-group)] (GB:AAV32202.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ49860.1); contains InterPro domain RNA p Range:  from: 16960661    to: 16967896    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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