Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->RAP2.3(1)                                                                 <------NtERF2                  <----                                                                <---------ATERF1(1)             <----                                                                <---------DEAR4(2)              <----                                                                <---------RAP2.3(1)             -----                                       <-----------RAV1(2)      <---------ORA47(2)             ------                              <------MYB83 <---------ANAC58    <---------RAP2.3(3)             ------                              <------MYB46(1)                  <---------RAP2.3(2)             ------                             --------->MYB55(2)       --------->At5g28300                <-----------                             --------->ABI4(2)        <------NtERF2                      ------------          ------>ZmHOX2a(2)  <---------MYB46(3)      ----------->GT1<------NtERF2       -------------        --------->ARR14(2)  <---------MYB55(1)      <---------DEAR3(1)                  <------------   <---------LBD16          --------->ALFIN1<-----------HVH21  <---------DEAR3(1)     --------->ARR14(2) -------CCA1(2)            <---------MYB52(1)   <-----------RAV1(2)------>NtERF2      <---------ARR14(2) ------DOF2            --------->ARR14(2)  <---------ANAC58  --------->CCA1(2)       --------->GLK1(1)   ttatctctgggatcgacatcatcggtatcggtgggtctagcacaggcgttacaggcggtgaagagacggcgcaaatgttctgagaacatatccatgttag  16959800      ------>ZmHOX2a(1) -----ANAC55(2) --MYB83 --MYB46(1) ---->ANAC55(2)                               --------->YAB1 --->MYB59                             --------->REM1(2)                    ----------->GT1 --->MYB111(1)                        --------->ALFIN1                 --------->LBD16 --->MYB46(2)                       <---------ANAC46                   ------>NtERF2 ----AGL15                        <---------At5g28300                 --------->ANAC46 --->AGL15                       <---------WRKY38(1)        <---------MYB52(1)   --------->REM1(1) ---->AGL1--------->TOE1(3)     ----------->HVH21       ------>ZmHOX2a(1)  --------->ICU4    -------- -----AGL1--------->TOE2(3)    <-----------HVH21 --------->MYB52(1)  <---------LBD16     <-----------RAV1(2)   gtaacctcctagccttaacaattttcaaatcgaggtcaccgtgtagaagcataacgtcctccgatactttctccgccatggttacaacaattcaggtgga  16959900                                                                            <---------At4g35610                                                                         --------->At4g35610                                                                         <---------ZAT2                                                                         <---------At4g35610                                                                         --------->ZAT2                                                                        <-----------RAV1(1)                                                                       <---------RAP2.6(2)                                                                  <-----------RAV1(1)                                                               --------->MYB52(2)                                                               --------->MYB111(2)                                                  --------->MYB52(1)  <---------At4g35610                                                 ------->GAMYB --------->MYB55(2)                                                <---------MYB52(2)<---------REM1(1)                 >>>>>>>>>TBF1                  --------->MYB46(3)<---------MYB46(3)              >>>>>>>>>TBF1                --------->TOE2(3)   <---------MYB46(3)            ------->TEIL        >>>>>>>>>TBF1---------->DOF2       --------->TOE1(3) <-------GAMYB  --------->At4g35610 ->ALFIN1  >>>>>>>>>TBF1   --------->MYB52(1) --------->MYB52(1)<-------GAMYB        ---------->DOF2   aggaaacgaagaagaagaagaagaaaagctaacaaaaaccgaaaaccctaacgaacagggctcggttgttgttgctgctgcagaaaccaaagatgaattt  16960000                                            <---------AHL20(1)                                            <---------AHL20(2)                                          <---------YAB1                                        <---------AHL20(2)                                       --------->ICU4                                       --------->AHL20(2)                                    <---------CCA1(1)                                    <---------RVE1(1)                                   <---------ARR11(3)                             --------->ANAC58                                   <---------AHL20(1)                             --------->ANAC58                               ---------->DOF2     ----------->GT1            --------->ANAC58                             --------->ANAC58     <---------TOE2(3)           --------->ANAC58      <                             --------->ANAC58<---------YAB1            ---------->DOF2            <--                    <----------DOF2--------->ARR11(3)      --------->ATHB12   --------->ANAC46   ----                 <-----------GT1   --------->AHL20(1)     --------->ICU4 <----------ID1 <------ZmHOX2a(1)   gaaaagttttttttttttttttctttagaaaacgaaagatatttattatttttaggtgaaatgatttgagagagaaagacaagcaaggaaggagaagaga  16960100                                                           --------->ARR14(2)                                                           --------->ARR11(3)                                                     --------->LBD16                 --------->ALFIN1                   <---------ANAC58                 ----------->HVH21                  <---------ANAC55(1)               <---------O2                    <---------ICU4==============HOX2a_HOX2a               <---------bZIP60(1)       <---------bZIP60(1) ------>ZmHOX2a(2)               --------->bZIP60(1)       --------->ETT(2)  <---------ARR14(2)     <-------MYC3               <---------ANAC55(2)       <---------ETT(2)  <---------AGP1         ------->MYC2               <---------TGA1a           --------->bZIP60(1)<---------GLK1(1)     ------->MYC3               --------->TGA1a        ----------->HVH21    <---------ARR11(3)     <-------MYC2               --------->O2     <---------At4g35610 <---------ANAC58             --------->ANAC58               --------->ANAC55(2)--------->ZAT18   <---------ANAC46<------ZmHOX2a(1)           --------->SPL7    <---------ANAC58 --------->ICU4===============HOX2a_HOX2a    --------->ALFIN1         <---------ANAC58 <---------YAB1<------ZmHOX2a(2)    --------->ANAC58  -- -----------RAV1(2)      <-------GAMYB----------->TGA1 --------->REM1(2)  *TSS <---------ALFIN1    <- ----ZmHOX2a(1)<---------ANAC46 --------->At4g35610 <---------ANAC55(2) <---------MYB46(3)     <----- ------->HVH21 ==================MYC_MYB <---------TGA2(1)<---------CCA1(2)XXXXXXXXXXXXXXXXXXXX>MIR835-5P   ggacaggtggagggacgacgtgatgggagttgtttgctcactgacgacattattccgtgtagatctcagaggagtcgttgcacacgttcttcatctagct  16960200                                                 ------->TEIL                                  --------->GLK1(2)         <---------ZAT14          --------->ARR11(3)         --------->ZAT14          <---------ARR11(3)                                       ----------  --------->YAB1   <---------AHL20(2)      ----------->TGA1                              ---------->DOF2 ------->TOE2(3)   --------->AHL20(2)    <---------ICU4                          --------->REM1(2)  - ---------DOF2   --------->ANAC55(2)    --------->ICU4                        <----------DOF2      -- ----GLK1(2) <----------DOF2      <-----------ARR10                   ------------>CBF--------->ANAC46   tctttaatcactgaactttacttaattagtttacaaaatctactgatgacgaatttgattttagaacgttgtaccaatagctttgtagacgtaaagaaat  16960300                                                                   --------->ICU4--------->ANAC58             --------->YAB1                                        --------->AHL20(2)             <--------ATHB1      <---------YAB1                    <---------ATHB12             <---------ICU4    --------->YAB1              --------->HSFB2a(2)   ----------->GT1            <---------ATHB51   <---------ICU4              <---------HSFB2a(2)   --------->ANAC58            <---------ATHB12  <---------ATHB12            <---------LBD16   <----------ID1 ->GT1      --------->ICU4    --------->ICU4 --------->ARR11(3)    <---------ATHB51 -------->DAG2      <---------TOE2(3)        <---------ARR11(3)    <---------AHL20(2)          ------ -------->DOF2     ---------->DOF2  <---------ANAC46 <----------DOF2<---------ICU4           --------   aaaaagctaatacaataatgctaaagttgacaatgatgatgtgaagagttcttctctttttctggacaaataattaagaagacaagtcaaaaaccagcta  16960400                                                                                           <---------WOX13(1)                            --------->ATHB12                                             ----------->GT1      ----------->GT1      <-------TEIL                                                  -------->HAHB4  --------->ARR14(2)  --------->AtMYB61                                                  --------->ATHB12  ------->TEIL        <---------ALFIN1                                    --------->AHL20(1)  --------->GLK1(2)  --------->ANAC46                                     --------->AHL20(2)    <----  <---------ARR11(1)------>MYB83                              --------->AHL20(2)        --------->ICU4  <---------ARR14(2)------>MYB46(1)                          <---------YAB1<---------AHL20(2)  ------ <---------CCA1(2)--------->MYB46(3)                       --------->YAB1 <---------AHL20(2)--------- <---------ARR14(1)--------->ANAC46                       <---------AHL20(2)            <---------YAB1 --->CCA1(2)      ------->GAMYB                           --------->AHL20(2)     ----------->GT1----- ->ZAT2        <-----------GT1              ----------->RAV1(1)           <---------AHL20(1)<--------   tgcgaatctggtgatattaacccaccacatccattggatagttttccaacatttgcttcatttattatatacaaaataaaatttggaaaaatgattaatt  16960500                                                                            <---------ZAT2                                                                            <---------At4g35610                                                           ==========================================        --------->YAB1                                     --------------->AGL15       --------->AHL20(2)              ----------->GT1     <---------------AGL15 <---------ANAC55(2)                <---------ANAC58      ----------------->AGL1 -----ICU4                          <---------ANAC58      <-----------------AG----------->GT1 --->ICU4                           --------->ALFIN1      <-----------------AGL1                 <--- >AHL20(2)                          <---------ANAC46      ----------------->AGL2           ========== ---->YAB1                    <---------AHL20(2) --------->ANAC58   ================================= -AHL20(2)                  <----------DOF2      --------->ANAC58   ---------->DOF2        ----------   atcacataaataaaaatcccaaaaaccattctttaatggtgtggataaaacaagaaataaacccatattggaaagtcgagctgtttaaacttttaaagtg  16960600             <---------ATHB51             <---------YAB1         <---------ATHB12    <-----------HVH21                                           ---------->DOF2   --------->ANAC55(1)                                     --------------->AGL15   <---------O2                                            <---------------AGL15   --------->O2                                           --------->ANAC46   --------->ANAC58                                  ------->TEIL   --------->ANAC46                                  --------->ARR14(2)     --------->At5g28300   --------->TGA1a                                   <-----------ARR10     ----------->GT1   <---------TGA1a                                   <---------ARR11(1)  --------->At4g35610   --------->ANAC58                                 <---------ARR14(1)  ----------->RAV1(1)   ==========================================bZIP_DOF<---------ARR14(2) ------->GAMYB   --------->bZIP60(2)                              <---------CCA1(2)  --------->MYB46(3)   <-------- <---------ALFIN1   --------->ETT(1)              <---------ANAC58--------->ANAC58          ------>ZmHOX2a(1) ==========================================================================MADS_MADS    --------->GLK1(2) --------HVH21<---------ICU4      ---------->DOF2 <---------ANAC58--------->ANAC58 ---------->DOF2 ============bZIP_DOF        ----------->GT1      --------->ANAC55(2)--------->MYB52(1) <---------ARR14(2) ============bZIP_DOF       --------->ANAC58      <---------ANAC55(2)----------->RAV1(1)--------->ARR14(2) >DOF2 --------->WOX13(1)   --------->ANAC58     <-------TEIL  <---------ATHB12>>>>>>>>>MYB98  <-----   gtcacacgtcaatcgataattgtcggaaacaaggaaaaaaggcattctcgattcgtatctactcaatgaagcaacagcagtaacataaagaatcctttca  16960700  Previous    Next  AGI:  At4g35790.1    Description:  ATPLDDELTA (Arabidopsis thaliana phospholipase D delta); phospholipase D. Identical to Phospholipase D delta (PLDDELTA) [Arabidopsis Thaliana] (GB:Q9C5Y0;GB:Q0WUE7;GB:Q944P8;GB:Q947R2;GB:Q9FS18;GB:Q9SZS7); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D delta isoform 1b [Gossypium hirsutum] (GB:AAN05432.1); similar to phospholipase D delta Range:  from: 16955522    to: 16960174    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35800.1    Description:  NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase. Identical to DNA-directed RNA polymerase II subunit RPB1 (RPB205) [Arabidopsis Thaliana] (GB:P18616;GB:P31635;GB:Q9SZS8); similar to NRPC1 (nuclear RNA polymerase C 1), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G60040.1); similar to hypothetical protein OsJ_016390 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32907.1); similar to putative RNA polymerase II [Oryza sativa (japonica cultivar-group)] (GB:AAV32202.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ49860.1); contains InterPro domain RNA p Range:  from: 16960661    to: 16967896    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version