Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->ARR14(2)                 <-----------ARR10                 <---------ARR11(3)                --------->CCA1(1)                --------->RVE1(1)            <------ZmHOX2a(1)     ------>MYB83--------->ARR11(3)     ------>MYB46(1)   <---------MYB111(1)   <---------------AGL15                                         <---------At4g35610   <---------MYB59                                               --------->ZAT2   --------------->AGL15       <---------ARR11(3)                --------->At4g35610   <---------MYB46(2)          <---------GLK1(2)                 <---------ZAT2  ----------------->AGL1    --------->HSFB2a(2)     ----------->HVH21                              <-  ----------------->AG    ------>ZmHOX2a(1)<---------ALFIN1--------->GLK1(1)                  -------   ttctacctaatcgaggaaatatcttctcctctagatacttcttcaacacatccagtgacagaaatcgagctgatttcagaaacaaaaaaaactcaaatat  16941500                                                                                              <------                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                           <---------ALFIN1                                                                                      --------->RAP2.6(3)                                                                                      --------->SPL7                                                                                     --------->MYB52(1)                                                                                    <---------SPL7                                                                                   ------>ZmHOX2a(2)                                                                                  <------ZmHOX2a(2)                                                                                 <---------ARR14(2)                                 ------>ZmHOX2a(2)            <---------HSFC1(2) --------->ARR14(2)                                <------ZmHOX2a(2)             --------->HSFB2a(1)<---------ARR11(3)                                --------->ARR14(1)  <---------LBD16              --------->ARR11(3)                                --------->CCA1(2)   --------->TOE2(2)          <---------HSFC1(2)     --------->ARR14(2)        --------->AGP1 --------->ZAT6  <---------HSFB2a(1)<-----------ARR10     <-----------ARR10         <---------ARR14(2)   --------->TOE1(2)          --------->HSFC1(2) ---------ID1        ---------->DOF2 <---------WOX13(1)       --------->HSFC1(2)<------ZmHOX2a(1) -->YAB1 <---------REM1(2)     --------->ARR14(2)  ----------->RAV1(2)         --------->HSFB2a(1)   aagaacaaatctacacagagagaaaaagaaacagatccgattgatatatcagtacctgggaagaattttccgataatacgaaggatcttacggccacgtt  16941600                      ------>ZmHOX2a(2)                     <------ZmHOX2a(2)                    --------->ARR11(3)                    <---------AGP1                    <-----------ARR10                    <---------ARR14(3)                    <---------ARR14(2) --------->At4g35610                    --------->ARR14(3) <---------ZAT2                    --------->ARR14(2) --------->ZAT2             ------>ZmHOX2a(2)         ----------->RAV1(2)           <---------AGP1 --------->ANAC58    ------>NtERF2   <---------ARR11(3) <---------At4g35610 -MYC3     ------->TEIL   --------->ANAC58 >MYC3     --------->ARR11(3)       <------ZmHOX2a(2) --TGA1a   <---------ARR14(2)      <-----------HVH21         --------->GLK1(1) ->TGA1a   --------->ARR14(2)   --------->HSFB2a(2)          <---------GLK1(1) --O2      <---------ARR11(3)   <---------HSFB2a(2)        --------->LBD16 ->O2     <---------CCA1(2) <---------GLK1(2)             --------->ANAC46                        <--   tgtctctgccatggatcttgaagatctcaagcttctcgatcagctgctcttgttcaatctccgaaatctgagaactcatcgtttctctctctctctctct  16941700                                                                                              -------                      <---------At5g28300                                                    --------            <---------DEAR3(2)                                                           --------->AHL20(2)            ----------->GT1                                                          <---------ICU4           <---------At1g77200                                                     <---------ARR11(3)           <---------DEAR3(1)                                      <---------ZAT14 --------->ARR11(3)        <---------ANAC46          <---------HSFB2a(2)         <---------ANAC46    --------->YAB1        <---------ANAC58        --------->YAB1                <---------ANAC58   --------->ICU4        <---------ANAC58 --------->At4g35610   <----------ID1 <---------ANAC58   <---------YAB1 --------DOF2        <-----------GT1    >>>>>>>>>TBF1 --------->DAG2   >>>>>>>>>TBF1<---------YAB1 --   cttttttgtttcgtcggtgaaattcacagttgaattatagaagaagaagggaacaaaaattgaggcgagtgaagaagaagatgatgatcattttaaaaag  16941800                                                                      --------->KAN4(2)                                                                     --------->KAN4(1)                                                                     <---------KAN4(1)                                                                     <----------TaMYB80             =                                                                     <---------HSFB2a(1)          <--                              --------->ATHB12                      <---------KAN4(2)             ---                             --------->AHL20(2)                     ---------->TaMYB80          <----             --------->AHL20(2)                                     <---------ARR14(2)        ------- <----------ID1              <---------AHL20(2)                     --------->ARR14(2)        <------ -->DAG2    --------->AHL20(2)<---------AHL20(2)                   *TSS                <----------DOF2 -->DOF2--------->AHL20(2)   --------->ICU4                 <----------DOF2      --------->At4g35610- -------->DOF2   --------->AHL20(2) <---------ANAC46----------->HVH21--------->HSFB2a(1)     <-------   ggaaagacaaaaaaataaaaaaaatagtgtattaattggagggtaatgggagaaacgacgggctcttacgaatattctatagcatcttcctttttatcat  16941900                                            <----------DOF2                                            <---------DAG2                                     -------->HAHB4                                     --------->ATHB51                                     <--------HAHB4                                     --------->YAB1                                     <---------ICU4                                    --------->ICU4                                    <---------YAB1                                  --------->ATHB51                                  <--------ATHB1                                  <--------HAHB4                                  --------->YAB1      <---------ALFIN1            <---------ICU4     ------>ZmHOX2a(1)           --------->AHL20(2) =============================HOX2a_HOX2a  <---------DAG2 -------ARR11(3)                 <---------ATHB12                          --------->ANAC58 ------>ARR11(3)       ------>ZmHOX2a(1)<-----------GT1                    --------->ANAC58 -----YAB1         --------->TCP15(1)-------->ATHB1                 <-------GAMYB -->YAB1           <---------PCF2--------->ICU4                 <----------DOF2 ---ICU4      <-----------RAV1(1)<---------ATHB51              ------>ZmHOX2a(2)                 <--- ----->ZmHOX2a(2)<---------MYB46(3) <---------ATHB51         <---------ARR11(3)    --------->GLK1(2) --YAB1     <----------DOF2  ------------>CBF                --------->ARR11(3) <---------MYB52(2)   gatcttcctcacctctttgtgggtcctacattccaataattattacctttttcgccctctcttgatctttcgttgttaagcaactaatctggtccatccg  16942000                                                   <----------DOF2                                                 --------->LBD16                                                 ------>NtERF2                                                --------->ANAC58                                                --------->DEAR3(1)                                                <---------ALFIN1                                                --------->ANAC58                                                --------->ANAC46                                              <---------ATERF1(1)                                              <---------ALFIN1                                             <---------ALFIN1                                             ------>NtERF2                                            --------->DEAR3(1)<---------ANAC58                                            --------->RAP2.3(3)                                            <---------ALFIN1  <---------ANAC55(1)                                           <---------ALFIN1   --------->O2                                           --------->ATERF1(1)<---------O2<---------YAB1                        <----------DOF2   <---------ATERF1(1) <---------ANAC46            --------->RAP2.6(3)           ------>NtERF2       --------->ANAC55(2)           --------->MYB52(1)            --------->ANAC46     <---------ANAC55(2)          ----------->HVH21        <----------DOF2 <---------DAG2       <---------ANAC55(2)         <---------MYB52(2)   <-----------GT1<---------ATERF1(1)        --------->ANAC55(2)      --------->REM1(1)<---------DAG2    --------->ANAC58     <---------ANAC58          --------->ATHB12 <-----------GT1  <---------At4g35610    --------->ANAC58  <---------MYB52(1)          <---------YAB1 ------MYB52(1)   --------->At4g35610   <---------LBD16   <-----------HVH21   <-------TEIL   tttttgctacatctaacggctactgccttttttgactcttttcccgccccccgccttaagcgttacgtctcatcacatgattcatgtagattattggata  16942100                                                                  --------->ICU4                                                                 <---------TOE2(3)                                                            <---------ICU4                 <---------                                                            -------->ATHB1    <------ZmHOX2a(2)                                                           <---------AHL20(2) --------->GLK1(1)                                                           --------->AHL20(2)--------->ARR11(3)                                                           --------->ICU4    <---------ARR11(3)                                                           <---------ATHB51  <---------AGP1<---------ARR11(1)                <------ZmHOX2a(2)                 --------->ZAT2---------->DOF2------>ZmHOX2a(2)      <---------MYB52(1)                          <---------At4g35610    ---------->DOF2  <---------CCA1(2)     <----------DOF2                        --------->GLK1(2) <---------YAB1--------->RVE1(1)     <-------GAMYB                ----------->GT1 --------->At4g35610<---------YAB1    <-------TEIL   agatgggcgttattttggatcatcccatccgatgttgagttaaactaatctgagcttacaaattattaaagattataaagatctctatgttcatatctat  16942200                                         <---------ARR11(3)                                      --------->TOE2(3)                                  <--------HAHB4                               <------ZmHOX2a(1)                                         <---------ICU4      --------->MYB52(1)      ----------->GT1                  --------->YAB1           <------ZmHOX2a(2)   <<<<<<<<<<<<<<<<<LFY       <----------ID1 --------->At4g35610  --------->MYB52(1)    =============   >>>>>>>>>>>>>>>>>LFY--------->AHL20(2)--------->ARR11(3)----------->GT1        <---------AtLEC2--- --ARR10   <---------GLK1(2) <---------TOE2(3)          --------->MYB52(1)<---------ARR14(2)  <------   ccaatgcccaatggaatcttttaaaaaatataaggaaaaacattatcttctgcatattaaacggataataacagcgaaacttgtggatggatcattacaa  16942300                                                           --------->ANAC58                                                           --------->ANAC55(1)                                                           --------->ANAC58                                                           --------->YAB1                                              --------------->AGL15                                              <---------------AGL15                                             --------->ANAC58                                             --------->ANAC58                        --------->ANAC58     <------NtERF2 --------->ANAC46                        --------->ANAC46     ----------------->AGL3                        --------->ANAC58  <---------ZAT18  --------->ANAC55(2)            <---------ARR14(2)                 <-------TEIL <---------ARR11(3)------>MYB46(1)                           --------->ARR14(2) ==================HOX2a_HOX2a--------->ARR11(3)------>MYB83                              --------->ARR11(3) -------->GT1  <------NtERF2 <------MYB83 --------->ZAT18<---------DOF5.7(2)              <---------ARR11(3) ---YAB1    <------ZmHOX2a(1)<------MYB46(1)----------->RAV1(1)                          <---------CCA1(2)   tagaaaaataccgaggaggcacattcaaggaaggtattcaatagggcaccaaatattgtaaacgtaattctctaagtttcccatacatcatatatctgct  16942400  Previous    Next  AGI:  At4g35750.1    Description:  Rho-GTPase-activating protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40658.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251) Range:  from: 16940512    to: 16941867    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35760.1    Description:  electron carrier/ protein disulfide oxidoreductase. similar to hypothetical protein [Vitis vinifera] (GB:CAN72958.1); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Vitamin K epoxide reductase (InterPro:IPR012932) Range:  from: 16942326    to: 16944682    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version