Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   -->ATHB51           --------->YAB1 -->AHL20(2) <---------At5g28300                                        <------ZmHOX2a(1)     <------ ---AHL20(2)<-----------GT1                                        <-----------GT1    =============== ---ICU4 <---------ICU4                                        <---------AHL20(2)     <------ZmHOX2a(1) ->ICU4 <---------AHL20(2)           ---------->DOF2          <---------YAB1          =============== --YAB1 --------->AHL20(2)      ----------->GT1            --------->ICU4         ---------->DOF2   ttagagcatattaattactgtaatcaaattagtgaagaaaaaagaagaagagagattagtgatttttatttacaggaagacgaagaaaggacttggtggt  16888000                           <----------DOF2                  ------>ZmHOX2a(1)                  <----------DOF2                ------>ZmHOX2a(2)                                                       --------->ANAC58               <------ZmHOX2a(2)                                     ---------->DOF2    <---------ANAC55(2)              --------->ARR14(2)                                   <---------YAB1       --------->ANAC58 ---MYB46(3)  <---------ARR14(2)                               --------->GLK1(2)        --------->ANAC46 =====================HOX2a_HOX2a                     --------->WOX13(1)               <---------LBD16 ======================HOX2a_HOX2a <----------DOF2<----------DOF2--------->YAB1       --------->MYB52(1)   ttcttaggcctgtttggatcctttgttttctttccaactttgttccctctaactttcaatctgagaatcataaaagacgatttcaaaactacggaaacaa  16888100                                                                                                 ----                                                                                              =======                                                  <---------ZAT18                             ------>ZmHOX2a(2)                                             <---------YAB1                                  ========                                   --------->ARR11(3)                         <---------YAB1 <------ZmHOX2a(2)                     ----------->GT1       --------->YAB1                    <---------ARR11(3) <----                    --------->ANAC55(2)   <---------ATHB12               <------MYB46(1)    ---------                    <---------ANAC46     ------>MYB46(1)               <---------MYB55(1)   <--------                    <---------ANAC55(2)  ------>MYB83                 <---------MYB52(1)    <--------                    <---------TOE2(3) <---------ANAC55(2)           <---------ANAC58        ---------                   <---------LBD16 <---------ARR11(3)  ------>ZmHOX2a(1) <------MYB83       ---------          --------->GLK1(2)    ---------->DOF2<---------ICU4        <---------ANAC58        <--------  ------->TEIL    --------->MYB52(1)  --------->ANAC55(2)           <---------ANAC46       <---------GLK1(1)   attgaatctaagaatcgagattacggataaatataaagatacctatcatcagtgctcctcgattcaacttccgtttggttatctttcatctcgagatctg  16888200                                                                    --------->ATERF1(1)                                                                   ------>NtERF2                                                                   <---------ERF1                                                                   <---------RAP2.3(1)                                                                   <---------DEAR4(2)                                                                   <---------ATERF1(1)                                                                   <---------ORA47(2)                                                                  <---------ANAC46                                                                  --------->ATERF1(2)                                                                  <---------RAP2.6(2)                              ----------->GT1                     <---------DEAR3(1)                             <------NtERF2                        <---------RAP2.3(3) ------->HVH21               ----------->GT1                      <---------RAP2.3(2) =============HOX2a_HOX2a   <---------MYB46(3)           <-----------RAV1(2) =============HOX2a_HOX2a <---------MYB52(1)        --------->WRKY12<------NtERF2 --------->ZAT2 -------HVH21          <---------LBD16              --------->WRKY38(1)           --------->At4g35610 >ARR11(3)           --------->ARR14(2)           <---------At4g35610       <------ZmHOX2a(1) -ARR11(3)           --------->GLK1(2) --------->At4g35610       <---------ABI4(1)<---------At4g35610 -AGP1 <------ZmHOX2a(1) --------->LBD16 ----------->HVH21 <---------At4g35610    <---------ZAT2 >ARR14(2)   --------->DAG2<---------ANAC46       --------->At4g35610<---------ANAC46 >AGP1 <----------ID1<---------ARR14(2)<---------At4g35610 --------->At4g35610  --------->ZAT18 -ARR14(2)  ---------->DOF2--------->ALFIN1  <---------LBD16     --------->ATERF1(1)  -------->P   tcacagagaggaacaaaagtgagaatccggtggggaaaaatagctgactcggagttgactcagatgaggcggcgagtaggagcgagcttacctctgtgtg  16888300                                                                             --------->ARR11(3)             <-----------GT1                                                 <---------ARR11(3)      <---------TOE2(3)                                                 <---------AHL20(2)      <---------TOE1(3)                  --------->ATHB12     <---------DEAR3(1)              <------      --------->MYB59                   <---------YAB1       *TSS----------->GT1  <------MYB83-------  <-------MYC3              <---------LBD16   <---------TOE2(3)<---------ANAC46   <------MYB46(1)<---  ------->MYC3  <----------DOF2    --------->CCA1(2)   <----------DOF2  --------->AHL20(2)<---------AHL20(2)   aacacgtttaggttatttctttttttgaattggggagagacgacgattgagataattctttgatgcggtgttaatttaagatgttggtatttttaatctt  16888400                                          --------->LBD16                                         <---------ANAC58                           <---------AHL20(2)                          --------->AHL20(2)--------->REM1(2)                      <-------TEIL       <---------ANAC55(1)                   <------MYB46(1)     ------>MYB46(1)                    --------->TOE2(3)                   <------MYB83--------->YAB1                          --------->GLK1(2)           --                  <---------------AtSPL8 <---------ANAC46          --------->YAB1                  --              <---------ARR11(3)       ------>MYB83     --------->At5g28300------>ZmHOX2a(1)       -- ---ICU4      --------->ARR11(3)  <---------WRKY18(1)  ----------->GT1<---------GLK1(2)           --- -->YAB1    <---------TOE2(3)  <---------ICU4         --------->ZAT6 --------->At4g35610      ------- ------WRKY18(1)  --------------->AtSPL8 <---------ANAC58    <----------DOF2                <--------   gaccgtagataattaagatgttggtacatttaatcttgaccatccgtgtaaattcaacagtaacttttatcagattcctaaataagtttttaagttacaa  16888500                                                                                 <-----------HVH21 ------->ANAC46                                                               <---------O2 ------->ANAC58                                                               --------->O2 ------->ANAC58                       <-----------GT1                         --------->TGA1a ---->GAMYB                       --------->TOE2(3)                           <---------TGA1a     --- -->REM1(1)                 <---------ICU4                         =====================bZIP_DOF  <-- ---GT1                  --------->TOE2(3)       <---------GLK1(2) <----------DOF2      ------->TEIL   cacacaaacatgctaacattgcatcatccctaattacattaaactacatttgattctctctctctctctctttgtgtctcatgtgtcatgaactcaccag  16888600                            <-----------HVH21                           ------->GAMYB                           --------->YAB1                           --------->AtMYB61                          <---------ATHB12                          --------->MYB46(3)                         ------>MYB83                 ------->GAMYB                    --------->ANAC46          <-------GAMYB------>MYB46(1)                    -------                   ------>MYB83        --------->AtMYB61   ------>MYB83                --------->ZAT14                   -------->P          <---------ICU4 <---------ALFIN1                 <---------At4g35610          --------->ANAC46<---------MYB55(2)<---------TOE2(3)                          <---------ZAT14       --------->ARR14(2)------>MYB46(1)   <---------At5g28300                    <----------DOF2   -       <---------ARR14(2)-------->P  ------>NtERF2   <---------MYB111(2)      <---------CCA1(2)------  ------>ZmHOX2a(1)------>MYB46(1)  --------->RAP2.6(2)  --------->AtMYB61    ---------->ID1 <------- ------>ZAT14      --------->SPL7--------->ANAC46    --------->MYB46(3)    ------>ZmHOX2a(1)--------- -------ZAT18     <---------ALFIN1 --------->MYB46(3)<---------MYB55(2)   <---------ALFIN1  <--------   tgtcctccatatacccatccctaccccaaccatcacagccaccattaccgttgcaaccaccttccatcgcttccctcctcgtctctttctgctctgcacc  16888700                                                                <---------At4g35610                                                                --------->At4g35610              <---                                                          <---------YAB1                   <---------                                                        <---------ICU4               <---------ICU4 >TEIL         ------->GAMYB       --------->ARR11(3)   <--------HAHB4               --------->ATHB12 ------>TEIL  --------->MYB46(3)   <---------GLK1(2)    --------->YAB1              <---------YAB1 ----->RAV1(2)<---------MYB52(2)   <---------ARR11(3)  <---------YAB1      ------->MYC3   <---------ANAC58 --ALFIN1------->GAMYB  <----------DOF2               <-----------GT1      <-------MYC3   <---------- >ZAT14  --------->TOE2(3)        --------->YAB1     --------->YAB1   ------>ZmHOX2a(2)   <---------ANAC58 -ZAT14 --------->MYB46(3)     ---------->DOF2    <----------DOF2   <---------ARR11(3) <---------WOX13(1)   tgtacctgtaaccacaacaaacttctctttagacaaagatacttctcagtttcttttatcattactagctgatctcacatgctctactgattgctttctc  16888800                                                                                    <-----------GT1                                                                                 <---------ICU4                                                                             <---------ATHB12   <-----------GT1                              <----------DOF2          <---------ZAT18 -------DOF2       --------->YAB1         --------->ZAT14                <---------ZAT14            < -DOF2<----------DOF2                     <---------ZAT14                --------->ZAT14      ------- --------------ANAC81           <---------At4g35610                      --------->ZAT18  <----------   ttttttttctttctaattctatagtatttagtagagcttactactatactctttcttcattcatgtgtaaacaagttcactcattcttacctcgtcgtct  16888900  Previous    Next  AGI:  At4g35570.1    Description:  HMGB5 (HIGH MOBILITY GROUP B 5); transcription factor. similar to HMGB4 (HIGH MOBILITY GROUP B 4) [Arabidopsis thaliana] (TAIR:AT2G17560.3); similar to HMGB4 (HIGH MOBILITY GROUP B 4) [Arabidopsis thaliana] (TAIR:AT2G17560.2); similar to HMGB4 (HIGH MOBILITY GROUP B 4), transcription factor [Arabidopsis thaliana] (TAIR:AT2G17560.1); similar to HMG1/2-like protein (Protein SB11) (GB:P26585); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 16887170    to: 16888361    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35580.1    Description:  no apical meristem (NAM) family protein. similar to ANAC014, transcription factor [Arabidopsis thaliana] (TAIR:AT1G33060.1); similar to ANAC014 [Arabidopsis thaliana] (TAIR:AT1G33060.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO62872.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) Range:  from: 16888410    to: 16890806    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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