Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                            ---------                                                                                            ---------                                        --------->ANAC58                                    <--------                               <------MYB83                          ---------->DOF2     ------>ZmHOX2a(1)                               <------MYB46(1)                    --------->ANAC58     --------------                              --------->MYB111(1)               ---------->DOF2        --------------                              --------->MYB46(2)         <---------WRKY18(1)           <-------------                              --------->MYB59           --------->WRKY38(1)      <---------ARR11(3)                             <--------P --------->AtLEC2--------->WRKY12         --------->ARR11(3)                         <---------ANAC58               --------->WRKY45       --------->ANAC58                         <---------ANAC46             --------->At4g35610      --------->ANAC58 ------At4g35610         <---------ANAC58      --------->AHL20(2) --------->ANAC58  <----------DOF2 ----->At4g35610   <---------YAB1       --------->ANAC58----------->HVH21   --------->WRKY18(1)   gatgacaacgatgtcaacattctcatggcgagtaggtaaaccaggcaaattaaaacagttgaccagagaagcaaagaggtcaagctctttcctaagctgg  16775900                                                                                                -----                                                                                                -----                                                                                              <------                                                                                            <--------                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                           --------->ATERF1(1)                                                                                           <------NtERF2                                                                                          <---------DEAR3(2)                                                                                          <---------ATERF1(1)                                                                                          ------>NtERF2                                                                                          <---------RAP2.3(1)                        -------->P                                                        --------->RAP2.6(2)                        ------>MYB46(1)                                                   <---------ORA47(2)                        ------>MYB83                                                     <---------DEAR3(1)                       ----------->RAV1(1)                                               <---------ATERF1(2)                      --------->AtMYB61                                                  <---------RAP2.3(3)                      <---------MYB55(2)                                                 <---------RAP2.3(2)                      --------->MYB46(3)                                                 --------->ATERF1(2)                     --------->MYB46(3)                            ------>ZmHOX2a(1)    --------->ATERF1(1) -At4g35610        <---------ALFIN1                               <---------ANAC58     ------>NtERF2 >At4g35610        --------->AtMYB61                              --------->TOE2(3)    --------->LBD16 >ZAT2            --------->MYB46(3)        <----------DOF2       <---------ANAC58     <---------RAP2.3(1) -ZAT2          <---------ALFIN1           <---------DAG2   <---------YAB1             <---------ATERF1(1) --->AG         --------->AtMYB61       <---------ALFIN1--------->TOE2(3)            <---------LBD16 --->AGL1    --------->ZAT6    <---------ZAT6           --------->TOE1(3)       <---------ALFIN1----- ----AGL1<---------MYB52(2) <------ZmHOX2a(1)      <---------MYB52(2)         <-----------HVH21 -----   acgttaagagaactaacaccaccaccaacaggagtcttaagcccacctttcaaacaaaccttattcttccttatcgactccatcacttccggcggcacac  16776000                                          <---------ANAC46                       <---------At4g35610                                          <---------ANAC58                   <-----------HVH21                                          <---------ANAC58                  --------->MYB52(2)                                     ------>ZmHOX2a(2)                     --------->SPL7                                    <------ZmHOX2a(2)                   <---------ANAC58         <---------ANAC46          <---------ARR11(3)                   <---------ANAC58   <---------CCA1(2)               --------->ARR11(3)                <---------DEAR3(1) ---->ANAC46              --------->HSFC1(1)                         --------->ANAC46 ---->ANAC58              <---------HSFC1(1)                        <---------LBD16 ---ALFIN1--------->LBD16 --------->HSFB2a(2)                      <---------ALFIN1 -ALFIN1<---------LBD16   <---------HSFB2a(2)<-------TEIL   ----------->RAV1(2)  --------->At4g35610 ---->ANAC55(1)   --------->TOE1(1)--------->ARR14(2)     <---------ALFIN1 <-------TEIL<------ZmHOX2a(1) ---->ANAC58      --------->TOE2(1)<---------ARR14(2)   <-----------HVH21<---------SPL7==============   ggctcatttctccgtgaacatcgtacttctcgaagaagatcggagcgtgcatcgcttccatcacctgttccacggcgttcgtcaccagaggaccgattcc  16776100                        --------->ALFIN1                       <-------PIF5                       <-------MYC3                             ------>ZmHOX2a(2)             <-----------HVH21                                 <------ZmHOX2a(2)             <-----------TGA1                                 --------->ARR14(2)            --------->ANAC46              --------->ALFIN1    <---------ARR14(2)           --------->At4g35610    ----------->HVH21        <---------ANAC55(2)        <------ZmHOX2a(2)        <-----------HVH21         --------->ANAC58       <---------ARR14(2)        <-----------TGA1 --------->ANAC58       --------->ARR14(2)       --------->bZIP60(2)        --------->ANAC55(1)           <---------ANAC58   <---------LBD16     ------->PIF5      <-----------HVH21<---------LBD16                <---------ANAC58   --------->LBD16     ------->MYC3      --------->ARR14(2)--------->ANAC55(2)    ------>ZmHOX2a(2)  <---------ANAC46     <-------MYC2      <---------ARR14(2)--------->ANAC58       ===================  <---------LBD16      ------->MYC2    --------->LBD16   --------->MYB52(1) ----------->RAV1(2) <---------LBD16    <---------ANAC46 <---------LBD16  --------->ANAC46      <---------ANAC55(2)  ---- ==============HOX2a_HOX2a      --------->ANAC46  --------->ANAC58          --------->ANAC55(2)  <---   atctccggggatcagcgtcactgcgcgtggtgctccgtcaccgggtctgggcatgtaagtcacggatcgggtttgaatacctgatccattcgcgtttcta  16776200                                                                                              <------                                                                                             --------                                                                                             --------                                                                                            <--------                        ------>ZmHOX2a(2)                                                   <--------           <------ZmHOX2a(1)                                                               --------->HSFB2a(1)           ====================HOX2a_HOX2a                                   ---------->DOF2---------           ===================HOX2a_HOX2a                            --------->CCA1(2)     <---------HSFB2a(1)   --------->GLK1(2)   <------ZmHOX2a(2)                            <---------ARR11(3)     --------->HSFC1(2)  <---------GLK1(2)   <---------ARR14(2)                            --------->ARR11(1)     <---------HSFC1(2) =================HOX2a_HOX2a                                   ---------->DOF2           ----------- ----->STY1(2)        --------->ARR14(2)             <-------GAMYB----------->ARR10   >>>>>>>>>TBF1 < ------STY1(2)<---------ZAT6            ---------->ID1    ------->TEIL     ------>ZmHOX2a(2)---------   gctagattcttgaggagagttagcgatctgcgagacatttttgtcttcaattttgggttgaatctgaaaagatttgatcgaaagagaagaagaagattcg  16776300                              --------->DAG2                          --------->ANAC58                          --------->ANAC58                         --------->SPL7     <---------ANAC58   ------>NtERF2                                                        --------     <---------ANAC58   <------NtERF2                                                        <------- -TEIL<----------DOF2  <---------SPL7                                                      <---------YAB1 ->ARR14(1)          <------NtERF2                                                         <---------TOE2(3) ->CCA1(2)           --------->ATERF1(1)                                    --------->ARR11(3) -GLK1(2)          <---------DEAR3(1)                        ------------>CBF      <---------At4g35610 -ARR14(2)    <---------ZAT2  *TSS      ----------->GT1     --------->ANAC46<---------ARR14(3) >ARR11(1)    --------->At4g35610       <---------ZAT6      <-----------GT1 --------->ARR14(3)      - >ARR10       <---------At4g35610     <------------CBF    <-----------GT1   --------->GLK1(2)<------- ----------DOF2 --------->ALFIN1 ----------->GT1   ----------->GT1          <---------ARR11(3)<------ >ARR14(2)    --------->ZAT2 ---------->DOF2--------->AHL20(2)              --------->ARR14(2)<------   ccctttggcttttgggagctggaggcggacgaaaagcgtttattgttaaaatttagttatttacacaattcgccccaaaatcttcatctcattaagatat  16776400                                                          <---------RVE1(1)                                                          <---------CCA1(1)                                                         --------->ARR11(3)                                                         <---------ARR11(3)          <-----------GT1                                                         <---------AHL20(1)     <---------ICU4                                                       <---------YAB1           <--------HAHB4      ------------>CBF                                 <---------TOE2(3)        --------->ATHB12   ---------->DOF2                                   --------->YAB1          --------->WOX13(1) ->ARR11(3)                                    --------->TOE2(3)            ------------>ATHB5 --AHL20(1)                                   ----------->GT1             --------->ANAC46 -------->TOE2(3)                           --------->GLK1(2)        --------->ARR14(2) --ARR11(3)                                <---------GLK1(2)    <-----------GT1<---------ATHB12 ---CCA1(1)                  <---------ZAT18--------->ARR14(2)<---------AHL20(2)--------->YAB1 ---RVE1(1)       <-----------GT1<----------DOF2  --------->WOX13(1) <---------ARR14(2)   ttccataaaacaatagataatcaccgattagaccactttgtttcagaatcgtcaattaagatatttatacaaatccccccaatcatttaacttcatcaac  16776500                                                                           --------->YAB1                                                                --------->LBD16                                                                ------>NtERF2                                                               --------->RAP2.6(2)                                                <---------RVE1(1)      --------->ATHB12            --------->AHL20(2)                  <---------CCA1(1)      -------->ATHB1 --------->ZAT14            <---------AHL20(2)         <-----------GT1        <---------LBD16   --------->AtLEC2           <---------AHL20(2)        <-----------GT1<-----------GT1    <---------ICU4 <---------ZAT14           <---------AHL20(1) <---------ANAC58 <---------ARR11(3)     <---------YAB1--------------->AtSPL8           --------->AHL20(2) <---------ANAC58 --------->ARR11(3)    <---------ARR11(3)      --------   atttactcagtaattaatttagtttgacatttgcttatttttcacttcagatatttacaaaattgccgcaaaatcattgatcatgcagagtactacatta  16776600                                                                                                 <---            <---------ANAC58                                         <---------WOX13(1)<-------TEIL<-       --------->YAB1                                               --------->ARR14(2)--------->CCA1(2)       <---------ICU4                        ---------->DOF2        <---------ARR14(2)--------->GLK1(2)     <---------ARR11(3)                 <---------AtMYB61      --------->ANAC46      --------->ARR11(1) ->TOE2(3)  <---------ANAC58          <----------DOF2         <---------LBD16--------->YAB1  --------   tttgcaaaatcataacttgcaccctcgaatttcatcaaggctttggtgaaagaagtcttagaaacacggagattggcaatgttaagagattcgaagcata  16776700  <-------MYC3  ------->MYC3 <---------O2 --------->O2 --------->TGA1a <---------TGA1a <---------ANAC46 <---------ANAC55(2) ----------->GT1                                        <-------TEIL --------->ANAC55(2)     ------>ZmHOX2a(1)              --------->ZAT18 --------HVH21           <---------YAB1    ----------->GT1                       <---------TOE2(2) ------------DYT1 <-----------TGA1      ------>MYB83--------->MYB59 <---------GLK1(2) ->YAB1        ------>ZmHOX2a(1)        ------>MYB46(1) <---------ZAT18    ----------->HVH21   gtcacgtgaatcaactccttcgtcatcctgatttttagtaccaaatggtacaatcaggtacacttggtctgattctcttgacataggttttttgttttcc  16776800  Previous    Next  AGI:  At4g35260.1    Description:  IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+). Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial precursor (IDH1) [Arabidopsis Thaliana] (GB:Q8LFC0;GB:O65501;GB:P94015;GB:Q7DM90); similar to IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT2G17130.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61645.1); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804); contai Range:  from: 16774200    to: 16776330    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35263.1    Description:  unknown protein Range:  from: 16776635    to: 16776802    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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