Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->CCA1(2)       --------->ARR14(2)       <---------ARR14(2)   --------->At4g35610       ------>ZmHOX2a(1) ---------ATHB12       <---------ARR11(3) ------ZmHOX2a(2)      --------->ARR11(3)                                                    <------- ----->DEAR3(1)  --------->YAB1                                                        <---------ARR11(3) -->ANAC58    --------->GLK1(1)                          <---------ALFIN1              --------->ARR11(3) -->ANAC46    <---------GLK1(1)                          --------->ANAC46             <---------CCA1(2) -->ANAC58   <---------ARR11(3)             --------->MYB52(1)                  <---------ANAC46 -ALFIN1     --------->ARR14(2)           <---------MYB52(2)  <----------DOF2<---------GLK1(2)  -----   cgatcatcggaaccagatatcagaacatctccttcggcattgaaactcacggtgtttacacaccctttgtgcttctctagcttcttgtatatctctaaac  16726200                                                     <--------HAHB4                                                     --------->ATHB12                                                     <--------ATHB1                                                     <---------ICU4                                                     --------->YAB1                                                     --------->ATHB51      ------>MYB83                                  --------->ICU4      ------>MYB46(1)                       <---------ICU4    <---------MYB59                         --------->YAB1                                --------->YAB1 <---------ARR14(2)      <---------------AGL15      --------->AHL20(2)                --------->AtMYB61 --------->ARR14(2)      --------------->AGL15      <---------ATHB51                 --------->MYB46(3) --REM1(2)              ----------------->AGL3    --------->YAB1                --------->ARR14(2) ---->ANAC46       --------->ANAC46  ----------->GT1<---------ATHB12   --------->CCA1(2) <---------ATHB12   gcagaaccaaattctacatatacagaaccaatataagaattgtgaatcataacaataattagtcaattgaacgatacgactaaatccaccaatgagactc  16726300                                                                                                   --                                                                                                   --                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ====                                                              ---------->DOF2                    ----                                                            <------NtERF2                        <---                                                           --------->LBD16                       <---                                                          <---------ANAC46                       ----                                                          <---------DEAR3(1)                     <---                                                         <------NtERF2                           <---                                                         --------->ATERF1(1)                    -----                                                        <---------ATERF1(1)                --------->GLK1(2)                                                       <---------DEAR3(1)                <---------HSFB2a(1)                                                    --------->TOE1(1)            <---------YAB1 -----      --------->MYB46(3)                           <---------LBD16               <---------ANAC55(2)    <---------ARR14(2)      --------->ARR14(2)    --------->TOE2(2)    ----------->GT1   --------->HSFB2a(1)    --------->ARR14(2)      <---------ARR14(2)    --------->TOE1(2)--------->ATHB12    <------ZmHOX2a(1)   atagaagaaccacaaatttcgaaactttcgaatccaatagagaaaacacaaacctcggaggcggagaagcgattggagaaattacgagaggagattccac  16726400         ------>NtERF2     --------->O2     <---------TGA1a     =================================================bZIP_DOF     <---------O2     --------->TGA1a --------->AtMYB61 ---->MYB46(1) ---->MYB83 ------>ORA47(1) ----->DEAR3(1) ----->DREB2C(2) ----->DEAR4(1) ----->MYB46(3)                                                                                     < ==============MYC_MYB                                                                            --- --->GAMYB<------NtERF2                                                                      <------- ------MYB46(2)                                                                             <-------- ------MYB55(2)                                                    <---------DAG2           --------- ------->HVH21                                           --------->AtMYB61    --------->At4g35610---- ------MYB111(1)                                     =================HOX2a_HOX2a           <-------- ------MYB111(2)                <---------REM1(1)    ------>ZmHOX2a(2)        <---------At4g35610<--- ---->MYB46(3)        ----------->RAV1(1)   <---------TOE2(3)      <----------DOF2          --------- ---->DEAR3(2)       --------->MYB46(3)    ---------->DOF2     ------>ZmHOX2a(1)    ------>ZmHOX2a(1)   cgacctctcgtcgccaaaaatcaacaacagggtgatgtagtccattaaagtttgatcgacctctcctcgctttctcactcatcttcctatgaaataaaat  16726500                                                  <---------WOX13(1)                                          --------->ARR14(1)      <------ZmHOX2a(1)                   --------->GLK1(2) --------->YAB1                          --------->ARR11(3) ---------YAB1                           <---------GLK1(2) ------>YAB1                             --------->ARR14(2) --AHL20(2)                              <---------ARR11(3) -AHL20(1)                              <---------HSFB2a(1) >AHL20(2)                              --------->HSFB2a(1)        --------->LBD16 ----->AHL20(2)       --------->At5g28300<---------ARR14(2)        --------->At5g28300 -AHL20(2)          --------->ANAC46    --------->HSFC1(2)        <---------ANAC46 ------AHL20(2)    <---------LBD16      <---------HSFC1(2) ------->TEIL   <-----------GT1  <---------ALFIN1 >AHL20(1)        <-----------GT1      ----------->ARR10  <---------CCA1(2)                ----------   ttataataggagaaagtttttcacggtaatagaccagagagaagattctctaattgctctgtatctcgccgtgaaattactacttcagaagtcccacaga  16726600                                            --------->ANAC58                                     <---                                            --------->ANAC58                                     <---                                           --------->SPL7                                        <---                                         *TSS                                                    <---                                        <---------ANAC58                                         ----                                        <---------ANAC58                                        -----                                        <---------ANAC46                                    <--------                                   --------->ARR14(2)                                       ---------                                   <---------ARR14(2)                                       <--------                                <---------ANAC55(2)                <------------CBF         <--------                                <---------ANAC58        <------NtERF2                    ----------->HVH21                                --------->ANAC46       ------>NtERF2                ---------->DOF2                                <---------ANAC58       --------->LBD16            --------->AHL20(2)                   ----------------------->TaNAC69(2) <---------LBD16             <---------AHL20(2)                 <---------ANAC46  --------->MYB52(1)<---------LBD16       ---------->ID1----------->TGA1 ->RAV1(1)   <---------ZAT14    --------->ANAC55(2)--------->DEAR3(1) --------->ATHB12--------->DAG2   gagaagacgaagaagcgtagtgtgtatttgtaatgcgtaactgcgtaagcccatcgccgggagagagaagattgtttggcccatttaaaaggtgacgacg  16726700 ------ANAC58 ------ANAC46                                           <---------ICU4 ------ANAC55(2)                                     <---------------AGL15 ------ANAC58                                  --------->YAB1 ----->ANAC55(2)                               <---------ICU4 ->NtERF2                                     <---------YAB1 -O2                    <---------DAG2      --------->YAB1 >bZIP60(1)             <----------DOF2     <---------ICU4       ---------->DOF2 --------->ICU4  ---- -bZIP60(1)      <------------CBF         ------->TEIL --------->ICU4 <-------TEIL             ------ -bZIP60(2)    <---------YAB1          <---------YAB1--------------->AGL15  ----------->GT1<---------AHL20(2)   cgtgttaacatctaattagcattgggctttttgggcttcttatgaatcatcatcaccataatgggctaaaagttcatgaagtaaaaatgggaatttatca  16726800                                               ------->TEIL                                            <---------ANAC55(2)                                            --------->ANAC55(2)                                            --------->ANAC46                                            --------->ANAC58                                            --------->ANAC58                                      <---------AHL20(2)                                  <---------AHL20(2)                                  --------->AHL20(2)                                 --------->AHL20(2)             --------->YAB1             ----------    ----------->GT1     --------->ANAC58   --------------->AtSPL3                       ---------->DOF2 ------>DOF2            --------->ANAC58   --------------->AtSPL8            <---------TOE2(3)      < --->YAB1         --------->AHL20(2)  --------->AHL20(2)     --------->YAB1  <---------TOE1(3)      <   aaagaaatgtgaaaattcaaataaacaagccttgatttaatttatcacgtaccattaaaccaagaatcacaaacttattgaggtttttctcaaaggaaaa  16726900                                                           <---------GLK1(1)                                                           --------->CCA1(2)                                               ===============HOX2a_HOX2a                                 <---------ANAC58      <------ZmHOX2a(2)                                 <---------ANAC46     --------->ARR11(3)                     --------->ICU4            <----------DOF2                     <---------YAB1          ------>ZmHOX2a(2)                  <---------MYB52(1)       --------->ARR11(3) ->GT1<---------At4g35610<-------TEIL      <---------ARR11(3)      --------->YAB1 ------MYB83  ------>ZmHOX2a(1)  <---------ANAC58     <---------ARR11(3)                ---------->DOF2 ------MYB46(1)  <-------GAMYB  ---------->ID1 ------>ZmHOX2a(1)  <---------YAB1      <---------YAB1-   tttggtttagctcttcctcggttatgattcatttttcgtatatatgatccttttaagatcgatatgcgatgataagagactgaacatcatcaaagtctct  16727000                                                                          <---------ANAC46                                                                          <---------ANAC58                                                                          <---------ANAC58                        --------->HSFB2a(2)                            ==============================                    <---------GLK1(2)                                  <----------DOF2                   <---------At4g35610                                <---------ANAC58                   --------->At4g35610                          <---------ANAC58                   <---------ZAT2                               <---------ANAC58              --------->ANAC58                              <----------DOF2         <---------ICU4<--              --------->ANAC58                             --------->MYB52(2)       --------->YAB1---            ---------->DOF2                              <---------MYB52(1)      --------->YAB1   <--    <---------CCA1(2)   <---------HSFB2a(2)           <-------TEIL    <---------ANAC58       <------- -------->TOE2(3)  --------->ZAT2---------->DOF2 ---------->DOF2<---------ANAC46--------->MYB46(3)---   aacctcatatcgagcaaagccagcttctgtaagaacaaagtcccattctttcaaagttcgttctttgcctgtgcttgtgtgaaccatcatcaccatgtca  16727100  Previous    Next  AGI:  At4g35140.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G38480.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70290.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 16723719    to: 16726641    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35150.1    Description:  O-methyltransferase family 2 protein. similar to O-methyltransferase family 2 protein [Arabidopsis thaliana] (TAIR:AT4G35160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47448.1); contains InterPro domain O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); contains InterPro domain Plant methyltransferase dimerisation; (InterPro:IPR012967); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077) Range:  from: 16726953    to: 16728536    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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