Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                --------->LBD16                                                                             --------->ANAC46                                                                             --------->ANAC58                                                                             --------->LBD16                                                                             --------->ANAC58   -----                                                                            <---------LBD16   <------                                                                        --------->KAN4(2)     -------                                                                       <----------TaMYB80     -------                <---------MYB52(2) --------->AtMYB61                 <------ZmHOX2a(1)        -------         --------->At4g35610    <-----------GT1                    <---------TOE2(3)        ---------         ----------->RAV1(2)    --------->YAB1                    --------->YAB1        <---------AHL20(2) --------->ANAC58         --------->TOE2(3)  ------->TEIL        <---------ATHB12      --------->AHL20(2) --------->ANAC58         --------->YAB1 <---------TOE1(2)  <-----------------AGL1--------->MYB46(3)<   cagacgtaaacatctgaaacaaacccaagcttaatcaccatcgcatgaatcttcttcccttcttccaatgaggaaattcccgcaaccgatttaatcacga  16723100                                                                                    <---------ZAT6                                                                                  ----------->GT1         <---------TOE2(3)                                                 <---------ALFIN1    <---------ANAC55(2)                                                    --------->ANAC46 ----->DOF2          --------->WRKY45                                      ----------->RAV1(1)   <--- ---ANAC55(2)        --------->WRKY12                                     ------->GAMYB          ---- -->ANAC58           ----------->HVH21                                  --------->ANAC58        <---- -->ANAC58           --------->WRKY38(1)                         --------------->AtSPL8    <--------- -->ANAC46         <----------DOF2               <---------AHL20(2)     --------->ANAC46  --------->TOE1(3) >YAB1 ---------->DOF2           --------->MYB46(3)          <----------DOF2   <---------ZAT2 ------- ------ZmHOX2a(1)--------->At4g35610            --------->AHL20(2)      --------->ANAC58  --------->TOE2(3)   aaggataagtaaaggtatcagctttgacccctgcaaacaccattctgctataaaattgaactgcttcaatgtacaacccacagctagtgaaacctttaat  16723200                                                                                                   <-                                                                                        ---------->DOF2                                                                                     --------->ANAC58                                                                                     --------->ANAC55(1)                        --------------------->WRI1                                   --------->ANAC55(2)                      --------->At4g35610                 ------>ZmHOX2a(1)          <---------ANAC55(2) ------ICU4    --------->ANAC58                     --------->ZAT18                  --------->ANAC46 ----->YAB1    --------->ANAC58                     <---------ZAT18                  --------->ANAC58 -----ATHB12 ---------->DOF2                     <---------ANAC58               --------->ARR14(2) <- -DOF2   --------->ANAC46                        <---------ANAC58               <---------ARR14(2) <- -->YAB1--------->LBD16 <----------DOF2          <---------ANAC46           --------->At4g35610  <---   catcacattccacagaaaagcatcagctttgttcatttcatcgaacagttggagtgcatcctccataagacgggaatcagcgaaaccacgtaaagcccta  16723300             --------->WRKY38(1)             --------->WRKY12          --------->ATHB12         <---------YAB1         <------ZmHOX2a(2)        <---------ARR11(3)        --------->ARR11(3)       <------ZmHOX2a(1)     <---------TOE1(2)   --------->ZAT14 <---------At4g35610                                     <---------ZAT2 --------->At4g35610                                     --------->ZAT2 <------NtERF2                                          --------->ALFIN1 --------WRKY45           <-----------GT1             <---------ANAC58 --------WRKY38(1)     --------->MYB52(2)             <---------ANAC58            <---------ARR14(2) --------WRKY12 <---------At4g35610      --------->HSFB2a(2)                      --------->ARR14(2) --------HVH21<---------WRKY18(1)        <---------HSFB2a(2)              --------->LBD16 --------->GLK1(1)   gtcagcgcaggatcattgacctgcttagttaccttgtatcggtctcgaagtactagccgtgctggtttcgaaattcccgagtcgaattcgagatttcgat  16723400                                                                   <-------TEIL                ------                                                                  --------->ARR14(1)    --------->ARR14(2)                     <---------At4g35610                    ----------->GT1             <---------ARR14(2)                     ----------->GT1                 --------->At4g35610            <---------ZAT2                    <---------MYB46(3)           --------->ANAC46 --------->CCA1(2) --------->ZAT2                 <---------SPL7                  --------->ANAC58--------->ARR14(2) <---------ZAT14              <-----------HVH21                  --------->ANAC58--------->ARR11(1) --------->At4g35610             --------->ANAC46   --------->At4g35610 ------->TEIL <---------ARR14(2) <---------At4g35610   tcccatttcgcttccccgtcgtctggtgattctcagaagaaacacacttgcacgcatcggaattgtagatacggtagcattgagacagcagagtcgcagc  16723500                                                                                            <--------                                                                                        --------->At5g28300                                                                                       --------->LBD16                                                                                     --------->LBD16                                                                                     <---------LBD16                   <---------LBD16                                                  --------->LBD16                 <-----------GT1                                                  >>>>>>>>>>E2Ff            <---------ARR14(2)                      <----------DOF2               >>>>>>>>>>E2Fc       ------>NtERF2                    --------->AtLEC2                          >>>>>>>>>>E2Fe       --------->LBD16                  --------->ANAC58               ------->TEIL<---------LBD16      <---------LBD16                   --------->ANAC58    <------NtERF2         >>>>>>>>>>E2Fa   --     <---------LBD16 --------->LBD16    --------->ANAC46  <---------DEAR3(1)      >>>>>>>>>>E2Fb ---- >NtERF2    --------->ARR14(2)---------->DOF2<---------ARR14(2)  <----------DOF2  >>>>>>>>>>E2Fd <---   catggattccggcgaattttcaccggaaaactgaaagaattcaagcaaatttgtctttcgtcgtcgtcttttgcatcttcattttcccgcggaaaattgt  16723600      <---------ANAC55(2)      --------->ANAC55(2)      --------->TGA2(1)      ----------->GT1      <---------bZIP60(1)      --------->bZIP60(1)      <---------TGA2(1)      <---------ANAC46     ----------->STF1     <-----------GT1     <-----------------------TaNAC69(2)                                          <---------AHL20(2)    <---------TGA2(2)  <---------YAB1                                           <---------YAB1   ----------->TGA1   <---------AHL20(1)                                     --------->ICU4         < ----CBF              <---------AHL20(2)          --------->AHL20(2) --------->ARR14(2)            -- ---------->CBF     <---------YAB1             ----------->GT1       <---------ARR14(2)        ------ ----->ETT(2)  --------->ZAT6                 ----------->GT1        <---------GLK1(2)         ------ ------ETT(2)<-----------GT1             ---------->DOF2 --------->LBD16--------->ANAC46     ------->TEIL   ctacaatgacgtaattaaccctattatttttctctgtgttcttaaaagaagataaattccgaattactacaaattcgccatttttaatgtctatgaacct  16723700                                     <-------MYC2                                     ------->MYC3                                     ------->MYC2                                   ------->TEIL                                <---------YAB1                             <---------YAB1                             --------->ICU4                          --------->ICU4       <---------ICU4       <---------YAB1     <---------YAB1       --------->YAB1                <------------CBF       - XXXXXXXXXXXXXXXXXXXXMIR407--------->YAB1     <---------YAB1              <----------DOF2        <--- -------->DOF2          --------->YAB1        <---------AHL20(2) --------->ICU4                  ---- --->TOE2(3)            <---------ICU4   ------->TEIL           <---------TOE2(3)      --------->YAB1 --->TOE1(3)           --------->ICU4<-------MYC3             <---------AHL20(2)  ------------>CBF --   taaaagtatatgatttatgcaacgaattatgatgatgaacgtgtatgtataattacaagaacatataatgttgagactttattgaacaatgaaaaaccat  16723800                                                         <-----------RAV1(2)                                                         --------->HSFB2a(2)                                             <-----------GT1                                          <---------ICU4 <---------HSFB2a(2)      --------->YAB1                    <---------ARR11(3)   --------->WOX13(1)                   --------->AHL20(1) -------->At5g28300       ---------->DOF2--------->AHL20(2)             --------------->AGL15 ----MYC3           ----------->GT1     --------->ARR11(3) --------->At4g35610 --->MYC3          <---------TOE2(3)    <---------AHL20(1) <---------At4g35610             <---------AtLEC2 --------->GT1   ---------->DOF2  ----------->GT1 <---------GLK1(2)     <---------------AGL15   gtggtaaatcaaaatacaaaaaaggttttaaagggactgaaaaatatttacaaattcttccagatgagtgttttctcttaagagaagaagtcttcatggc  16723900                                                                                                <----                                                                                              -------                                                                                             --------                                                                                             <-------                                                                                             --------                 --------->At4g35610                                                         <-------            --------->YAB1                                                                   <-------            <---------ICU4                                            <---------ARR11(3)    <--------           <---------YAB1                                     <------ZmHOX2a(2)             ---------         --------->YAB1                                <------ZmHOX2a(1)                    <--------         <---------ICU4                            --------->ALFIN1   --------->ARR11(3)    ---------        <---------YAB1                    <---------ICU4     <---------ARR11(3)            ----------      <---------ICU4                      --------->ATHB12   --------->ARR11(3)    --------->At4g35610      --------->YAB1      <---------YAB1 <---------YAB1==============HOX2a_HOX2a  <---------MYB46(3)-   tattaccatcatcatcatcagttgcattttcatcgtcgctctgatcattgaaggtgaggataagatcaagaagttctcttccagtggctgaagaagattc  16724000  Previous    Next  AGI:  At4g35130.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18750.1); similar to hypothetical protein OsI_009686 [Oryza sativa (indica cultivar-group)] (GB:EAY88453.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93859.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47428.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16721089    to: 16723503    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g35140.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G38480.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70290.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 16723719    to: 16726641    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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