Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->ARR11(3)                                        --------->AHL20(1)                    >>>>>>>>>>ABI3                                        <---------ARR11(3)           --------->CCA1(2)     <---------ALFIN1                                   <------ZmHOX2a(1)                --------->ARR11(3)  --------->ANAC58                            <---------YAB1               <---------ARR14(2)   >>>>>>>>>>FUS3       <-                          <---------AHL20(2)             --------->ARR14(2)  --------->AtLEC2    ----                          --------->ATHB12            <---------HSFB2a(2)    --------->ANAC58   <----                    --------------->AGL15             --------->HSFB2a(2)    --------->ANAC58 <------          >>>>>>>>>>>>>>>>>LFY    ----------->GT1   <-----------GT1 --------->ARR11(1)  --------->ANAC58        <-----------GT1  --------->AHL20(2)  <-----------GT1        <---------ARR14(2)  --------->ANAC46 ---GT1<-----------GT1   --------->ICU4 <---------AHL20(1)          --------->ARR14(2)<-----------GT1   tttgtgtatttatcccattgttccatatttattagtaggaaaaatattcacattttacagaactgcaaaagatttggccatgcaaattataccccacttt  16708200                                                           <---------ICU4                                                           -------->HAHB4                                                          <---------ATHB51       <---------AHL20(2)                               --------->YAB1      --------->AHL20(2)                             ----------->GT1 --------WOX13(1)                             <---------WOX13(1) ----->ATHB12                               --------->ATHB12          <---------YAB1        --------- -----YAB1  --------->ANAC46               <---------YAB1 --------->ICU4    <---------TOE2(3)    <--- ----DOF2 <-----------GT1                  <---------AHL20(2)       <-----------GT1    ----------->GT1   gattgctattttatacactatatcatacagtacaagaacaaaaatttgattgggccagtaataatgcatataactattgatgttagcaagagaaaaaaat  16708300                                               <---------ICU4                                           --------->ICU4                                      <---------ANAC58                                      <---------ANAC58                                      --------->YAB1                                     <-------TEIL                                   --------->KAN4(2)                                  --------->HSFC1(2)                                  <---------HSFC1(2)                                                <                                  <---------HSFB2a(1)                                               -                                  <---------KAN4(1)                                                <-                                  --------->HSFB2a(1)                  <---------ICU4              <-                                 <---------KAN4(2)                     -------->HAHB4              --  --------->AHL20(2)        <---------AtLEC2  --------->ICU4          <---------ATHB51             --  ---------->DOF2     <---------AHL20(2)   <---------YAB1           --------->YAB1                 == >AHL20(2)          <---------YAB1--------->KAN4(1)      <---------AHL20(2)                      <--- ----TEIL      >>>>>>>>>>WRKY63<------ZmHOX2a(1)       <---------YAB1 --------->ICU4   <---------TOE1(2)   gcattaaaacacaaatttgactattattttgcaggaacattcgtgataattttgactattattttgtcagtaataatgcatattaatcgtatgtgatttt  16708400                                                                                              -------                                                                                              -------                                                                                              <------                                                                                             --------                  --------->ANAC58                                                           <-------                  --------->ANAC58                                                         <---------ICU4           <---------HSFC1(2)                                                              --------->YAB1           --------->HSFC1(2)                                                              -------->HAHB4           --------->HSFB2a(1)                                                            <---------ATHB12           <---------HSFB2a(1)                                                            <---------ATHB51         ---------->DOF2                                                                  --------->ICU4 ---------------AGL15                                                             --------->YAB1 -------------->AGL15                                                            --------------->AtSPL8 ----------------AGL3                                                            <---------------AtSPL8 ----------------AGL2                                <---------MYB52(1)          --------------->AtSPL3 --------------->AG                        <---------------AtSPL8            --------->AHL20(2)  ---- --------------->AGL2                  <---------AHL20(2)              <-----------GT1  --------->YAB1 ====================================================MADS_MADS   <-------GAMYB<---------AHL20(2)<---- --------GT1      --------->ANAC46   <---------------AGL15      ----------->GT1<-----------GT1-------   aactaaaactggaaagttccaaggaacatttagtagtttatatttttagtactaagttagtttagagggttattaactatttaatcgtactaataatgat  16708500   --------->YAB1              --------->ANAC58  --------->At4g35610          --------->ANAC58 ->HAHB4                       <---------ANAC55(2) -->YAB1                       --------->ANAC55(2)                                        <----------DOF2 ---ICU4                       --------->ANAC46                                      <-----------GT1 ->ICU4                        ----------->GT1                                       ---------->ID1 --YAB1                        --------->ANAC55(1)                               <----------DOF2 ----->YAB1               <---------------AtSPL3                                 <---------DAG2 -----YAB1                <---------------AtSPL8  <---------MYB52(1)        --------->GLK1(1) -->ATHB12         <---------ZAT14       ---------->DOF2     <---------LBD16<---------GLK1(1)   tataagcagaattatgtagactatacaaatagtacgtaataccgaaagtacccttggtttatccctggcattacaagggtttcctttttcccctttaaaa  16708600                               ----------->RAV1(1)                             --------->ZAT14                             --------->At4g35610                   <------NtERF2                 <---------ETT(2)                             ---------->DOF2              <-----------RAV1(1)                         <---------------------WRI1          <-------TEIL   <---------ALFIN1                ----------->GT1     --------->ETT(2)   *TSS  --------->CCA1(2) --------->ANAC46       <---------STY1(2)      --------->ARR11(3)  --------->At4g35610<-----------TGA1             --------->STY1(2)  ---------->DOF2  <---------At4g35610<-----------HVH21        --------->STY1(2)  <----------ID1                  ----   tggcagaagagatacactgtcgtcgtcacacagcaccacaaactccatagctagctagagagtaaaaagaacaaagatgtcgaaagaagtgagcgaagaa  16708700                                            ------>ZmHOX2a(1)                                        --------->ARR14(2)                                        <---------ARR14(2)                                       --------->At4g35610                                       --------->ZAT2                                       <---------ZAT2                                     --------->MYB46(3)                                     <---------ALFIN1                                  <---------ALFIN1                                ------>ZmHOX2a(1)                              =====================HOX2a_HOX2a                             ======================HOX2a_HOX2a                             <------ZmHOX2a(2)                            --------->ARR14(2)           --------->AtLEC2 <---------ARR11(3)                               <----------DOF2       ------>MYB83         --------->ARR11(3)    --------->ETT(2)      ------>ZmHOX2a(1)       ------>MYB46(1)      <---------ARR14(2)   <---------HSFB2a(2)--------->ARR14(2)      --------->ANAC46    ----------->ARR10<---------ALFIN1   --------->At4g35610     --------->MYB46(3)<---------ANAC46<---------At4g35610    <---------At4g35610      --------->ZAT14 ------->GT1   ---------->DOF2------>ZmHOX2a(2)  --------->HSFB2a(2)<---------ARR14(2) <---------ZAT18   ggcaaaacccaccatggaaaagactacgtggatcctccaccagctcctcttctcgacatgggtgagctcaaatcctggtctttctacagagctctcatcg  16708800                                                                                      <---------MYB46(3)                                                                                      <------MYB46(1)                                                                                      <------MYB83                                                                                     <---------AtMYB61                                                                                    <---------MYB52(1)                                                                                  <---------ANAC46                                                                                 <------NtERF2                                                                                ------>NtERF2                                                                                <---------RAP2.3(1)                                  --------->DEAR3(1)                           <---------RAP2.6(2)                              ----------->HVH21                                <---------RAP2.3(3)                             <-----------TGA1                                  <---------DEAR3(1)                             <-----------HVH21                                 --------->bZIP60(1)                            --------->ANAC58                               <-----------HVH21                         xxxxxxxxxxxxxxxxxxx>smallRNA(s2)        --------->MYB52(1)<-------GAMYB                        ------>ZmHOX2a(1)                   --------->ANAC58   <---------bZIP60(1)                  ------>ZmHOX2a(1)<-----------HVH21        --------->ANAC58----------->HVH21              --------->ANAC46--------->TGA2(2)      ----------->RAV1(1) ------>ZmHOX2a(1)            <---------ALFIN1--------->bZIP60(2) <---------At4g35610     <---------ANAC58           <---------ZAT14  --------->ANAC46    --------->At4g35610     <---------ANAC58    <--------           --------->ZAT14  --------->ANAC58<-----------HVH21   --------->MYB52(1)<---------DEAR3(1)   <-------TEIL----------------------->TaNAC69(2) --------->ANAC46   <---------MYB52(1)     <--------   ctgagttcatcgctacactcctcttcctctacgtcaccgtcgctactgtcatcggccacaagaagcaaaccggtccttgtgacggcgttggtttacttgg  16708900                                                   <---------CCA1(2)                                                --------->ATERF1(2)                                               <---------LBD16                                              --------->ABI4(1)                                              ------>NtERF2                                             --------->DEAR3(1)                                             <---------ALFIN1                                            --------->MYB46(3)                                            --------->ATERF1(1)                                            --------->DEAR4(2)                                            --------->DEAR3(2)                                            --------->ORA47(2)                                           <---------ATERF1(1)                                          <---------ALFIN1                                ------>ZmHOX2a(1)<---------DEAR3(2)                        ------>ZmHOX2a(2)--------->ZAT18                                      <------  <---------ANAC46    --------->ARR11(3) --------->ZAT14                                 <----------DOF2  <---------ANAC58    <---------ARR11(3) <---------ZAT14                           --------->TOE1(3)  <---------ANAC58  ----------->ARR10  --------->ANAC46     <--------P      --------->AtMYB61 <------ -ANAC58        <---------MYB46(3)    --------->At4g35610  <---------MYB52(1)      --------->TOE2(3) -ANAC58 <----------DOF2===============HOX2a_HOX2a<---------MYB52(1)   XXXXXXXXXXXXXXXXXXXXX>MIR856 -   tatcgcttgggctttcggtggtatgatcttcgtcctcgtctactgcaccgccggtatctctggtaagtttgaatcccaccaaaaaccctaacttttactt  16709000         <------MYB46(1)         <---------MYB46(3)         <------MYB83        <---------TOE1(2)        <---------TOE2(2)       <---------MYB52(1)      <-------GAMYB     --------->MYB55(2)     --------->MYB52(2)                              <---------MYB46(3)     <---------MYB46(3)                           <------MYB46(1)           <----------DOF2    <-------TEIL                                  <------MYB83          ----------->HVH21         --- <------MYB83                                    <---------TOE2(2)  --------->At4g35610          <--- <------MYB46(1)  --------->TOE2(3)              <---------TOE1(2)  <---------ZAT2              <---- <---------MYB46(3)      ----------------------->TaNAC69(2)         --------->ZAT2              xxxxx ---ANAC58       ----------->GT1                 <---------AtMYB61  <---------At4g35610        <----- ---ANAC58   <---------AHL20(2)              <---------HSFB2a(2)    ----------->RAV1(2)        ------ -------->MYB59  <---------ZAT6              --------->HSFB2a(2)  <-----------RAV1(2)          ------   gtttggttcgttggttttattgttaatctcgttcttgttctcgtcttctcgtaggtggtcacattaacccagctgtgactttcggtctgttcttggcccg  16709100  Previous    Next  AGI:  At4g35100.1    Description:  PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel. Identical to Aquaporin PIP2-7 (PIP2-7) [Arabidopsis Thaliana] (GB:P93004;GB:O22332;GB:O49616); similar to PIP2,8/PIP3B (plasma membrane intrinsic protein 2,8), water channel [Arabidopsis thaliana] (TAIR:AT2G16850.1); similar to aquaporin [Brassica oleracea] (GB:AAG30607.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) Range:  from: 16708603    to: 16710253    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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