Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                               <-----                                                                                               <-----                   <---------ARR14(2)                                                       ------->GAMYB                   --------->ARR14(2)                                                      <---------MYB111(2)                 ------>NtERF2                                                             --------->MYB46(3)                 <------NtERF2              ------>ZmHOX2a(1)                         --------->ANAC58                --------->RAP2.6(2)   <---------WRKY38(1)                             --------->ANAC58                --------->DEAR3(1)    <---------WRKY12                                --------->ANAC46          --------->AtMYB61          --------->WRKY18(1)                            ----------->RAV1(1)       <---------ALFIN1             <--------ZAP1                                   <---------ALFIN1       ------->GAMYB               --------->LBD16                                  --------->AtMYB61      --------->MYB46(3)   <----------DOF2 --------->TOE2(3)                       --------->ANAC46      <---------MYB55(2) <---------ZAT2   --------->YAB1                           --------->MYB46(3)   --------->MYB46(3)    --------->ZAT2--------->WOX13(1)                        --------->ANAC46---- --------->ANAC46<---------ATERF1(1)<-----------HVH21                        --------->GLK1(2) <----- ---->ANAC58   <---------LBD16   <---------LBD16                 <-----------------------TaNAC69(2) - ---->ANAC58   --------->RAP2.3(1)--------->LBD16  ---------->DOF2          <---------GLK1(2)  ------   gacccacaaccaccttcgccgcatccgagctttgtcccggtcaatcctaaatctaaaggaaacaaaaaacgttttcaagaatcccaccacacaacaacct  16631100 -->MYB83                                                                                         === ----MYB46(2)                                                                                <------- ----MYB59                    <---------RAP2.6(2)                                            -------- -->MYB46(1)--------->At4g35610  <---------ANAC58                                     --------->AHL20(2) ----MYB111(1)              <-----------RAV1(1)                                       --------->YAB1 ------>GAMYB        <-----------GT1                                                 <---------ATHB12 --->AtMYB61<---------At4g35610  <---------ANAC58              --------->CCA1(2) <---------ATHB12 ---   aaccctctaaattttgctgcattgtacaatttgtggcttctctactctatctaaacttagattagatataagcatttgaagaaatcaataatatagagtt  16631200                             --------->O2                                            ------>NtERF2                             <---------ANAC55(2)                              --------->ATHB51                             <---------O2                                     <---------ICU4                             --------->TGA1a                                  --------->ATHB12                             <---------TGA1a                                 <---------YAB1                         <-----------TGA1     --------->ANAC58            ------->TEIL                         <-----------HVH21    --------->AtLEC2            <-------TEIL                  --------->HSFB2a(2)         --------->ANAC58        <---------TOE1(3)                  <---------HSFB2a(2)     <-----------HVH21           <---------------AtSPL8   ------->TEIL   <---------HSFC1(1)     --------->WOX13(1)           --------------->AtSPL3 ======================================bZIP_DOF                       --------------->AtSPL8 --ZAT6     --------->ARR11(3)    --------->At4g35610                 <---------TOE2(3) --->GT1    <---------ARR11(3)    <---------At4g35610                <---------DOF5.7(2) ------->DOF2--------->CCA1(2)  --------->ZAT18                    --------->DOF5.7(2)      ------->TEIL   aaaagcacctctgagatattcgagaagcgtcatgtgagctaatccatcaggcaaaactctacgaacaccattaacgtacattattgcctccatgaactcg  16631300                                                        --------------->AGL15                                                       ----------------->AGL3                                                       <-----------------AGL3                                                       <-----------------AGL2                                                       <-----------------AGL1                                                       <-----------------AG                                                       ----------------->AGL2                                                       ----------------->AG                                                       ----------------->AGL1                                                   --------->ARR14(2)                                           <--------ATHB1                                           <------------ATHB5                                           --------->ATHB51                                           --------->YAB1                                           <---------ICU4                                          <---------ATHB51                            <-----------ARR10                                          --------->ICU4<---------------AGL15         --------->ARR14(2)                                          <---------ATHB12 <---------ATHB51           --------->ARR14(3)                                       <---------------AGL15                          <---------ARR14(3)                                      ------------>CBF ------------>CBF      --------->YAB1                                      <-----------------AGL3                 --------->ATHB51                                      ----------------->AGL3                 --------->ATHB12                                      ==================================MADS_MADS     <---------ARR11(3)                                      ==================================MADS_MADS     --------->ARR11(3)                                      ----------------->AG <---------ATHB12  <---------ICU4                                      ===================================MADS_MADS    --------->GLK1(2)                                      <-----------------AG --------->ICU4    -------->ATHB1                                      <-----------------AGL1--------->ATHB51 <--------ATHB1                                      ----------------->AGL1--------->YAB1   <------------ATHB5                 ------->TEIL         <-----------------AGL2<---------ICU4  --------->ICU4               --------->ZAT14    <---------MYB52(1)--------->GLK1(1)       <---------ATHB12             --------->ANAC46   *TSS  ----------------->AGL2<--------ATHB1  <---------ATHB51 --------->At4g35610         --------->MYB52(1)    <---------ARR14(2)   ------------>CBF           <- <---------At4g35610<-----------RAV1(2)--------------->AGL15<------------ATHB5<------------CBF<------   ttctgctccatcttcactgaacccagacgaataactgttatccaataatggcaaatatccaataatggcaaaaatccaataattgcaaaatcttctcttt  16631400                                                   --------->YAB1                                                   -------->ATHB1                                                   <--------HAHB4                                                   --------->AHL20(2)                                                   <---------ICU4                                                   --------->ATHB51                                                  <---------ATHB12                                                  --------->ICU4                                                  <---------ATHB51      <------------------------ANAC81         ------------>CBF --------AHL20(2)                        ---------->DOF2                                      <------ ----DOF2                    XXXXXXXXXXXXXXXXXXXX>MIR157A-C    ---------->DOF2           ------------   ttaaaatgttttttttttgttttcatttttcgacaaaaaatagaaaagcccaattattaagcccataaagaagaatgtagcccaaaataagcccaatatt  16631500                                                                  <------ZmHOX2a(1)                                                                --------->ALFIN1                                                               <------NtERF2                                                             --------->ALFIN1                                                             <---------ANAC46                                                             <---------DEAR3(1)                                                            --------->ATERF1(1)                                                            <---------LBD16                                                            ------>NtERF2                                                            <------NtERF2                                                           <---------ATERF1(1)                 ----------->HVH21                        <---------DEAR3(1)               --------->HSFB2a(2)                       <---------LBD16               <---------HSFB2a(2)                    ---------->DOF2         --------->YAB1----------->GT1               <---------ARR14(2)        <---------ATHB12                            <------ZmHOX2a(1)    ------------>CBF <------------CBF   ------->GAMYB--------->ARR14(2) ------CBF   --------->ALFIN1          <XXXXXXXXXXXXXXXXXXXXXMIR4221     <-----------GT1<-----------HVH21 >CBF --------->WOX13(1)              *TSS   --------->MYB52(1)--------->ATERF1(1) <-----------GT1   ggagtcatcaatcaggtctgggacattgaaaaaactcagtaacagtctaacagaggaaacgcggcggaggaggttttacgactattttcccttcacttct  16631600                 <----------DOF2                 <---------DAG2               ------>NtERF2              --------->RRTF1(3)              --------->RAP2.3(2)              --------->DEAR3(1)             --------->RAP2.3(1)             <------NtERF2             --------->ATERF1(1)             --------->DEAR4(2)             --------->ORA47(2)            ------>NtERF2            <---------RRTF1(1)                                                                   ----            <---------ATERF1(1)                                                                  ----            <---------RAP2.3(1)                                                                  <---           <---------DEAR3(1)                                                               <------ZmHOX2a(1)           --------->ANAC46                                                               <----------         ------>ZmHOX2a(1)                                                             --------->ALFIN1       ----------->RAV1(2)                  <---------LBD16                ----------->GT1<---------ANAC46   tcatcttcttcctgcgccgcttttcaaacctattcgaccagacaaactcggaaatttcatattccatgggtaagacgaagttaaaacctgtggaggatgt  16631700        --------->ALFIN1        <---------AtMYB61                              ----------->RAV1(1) <---------LBD16                                      --------->ANAC58 ----->ZAT14                      <------ZmHOX2a(1)   --------->ANAC58                            --- ----->ZAT18                   --------->At4g35610    ----------->HVH21                       ------- ------ZAT18  <---------------------WRI1   <------ZmHOX2a(1)                   ---------->DOF2------- -----------WRI1         ---------->DOF2 <---------TOE2(3)                ----------->GT1     -------   gaactcggaagtggtggacgaagttgagaaagcagaggaagttgaggaacagagaaacgacagagaacaagaagaagagcaaaaagaagaagaggcacct  16631800                                                  ---------->DOF2                                               <---------------AGL15                                               --------------->AGL15     <---------MYB52(1)                                              <-----------------AGL2   ----------------->AGL2                                          <---------MYB59            -------->P <---------At4g35610                                       --------->ZAT18               ------>MYB83 --------->WOX13(1) ------->DOF2         <---------GLK1(2)<---------ZAT18               ------>MYB46(1)           ------ -->At4g35610     <---------ANAC58  <---------ANAC58               --------->AtMYB61          <------ -->ANAC58        <---------ANAC58  <---------ANAC58              <---------MYB52(2)          <------ -->ANAC58--------->ARR11(3)       --------------->AtSPL8         --------->MYB46(3)<---------ATHB12   aaaagtttcgaagagctagggcttgattctcgtctaattcgtgccctaactaaaaagggtatagagaaaccaacccttattcagcaatcagccattcctt  16631900                  ---------->DOF2         --------->ICU4         ----------->GT1                                                     <---------AHL20(2)------         <---------YAB1                     <---------ANAC58              --------->ATHB12    <------   <---------HSFB2a(2)                      <---------ANAC58             <---------YAB1  <---------MYB52(1) >ZmHOX2a(1)<---------YAB1                  <---------ANAC46--------->ARR11(3)          <-------GAMYB ---ANAC58-------->HAHB4      <----------DOF2             <---------AHL20(2) --------->AHL20(2)<----- ---ANAC58--------->YAB1     <---------DAG2 <---------bZIP60(2)       --------->ICU4   <-----------RAV1(1)   acattctggtaatgataatagaaagtctctaccttttttttgagtttcgtggctacttatataatcttgggactgatgatttattgtctctgttgttctt  16632000  Previous    Next  AGI:  At4g34900.1    Description:  xanthine dehydrogenase. similar to ATXDH1 (XANTHINE DEHYDROGENASE 1), xanthine dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21923.1); similar to Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96752.1); similar to hypothetical protein OsJ_010898 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27415.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal (InterPro:I Range:  from: 16625560    to: 16631332    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34910.1    Description:  DEAD/DEAH box helicase, putative (RH16). Identical to DEAD-box ATP-dependent RNA helicase 16 (RH16) [Arabidopsis Thaliana] (GB:Q9SW44;GB:Q9ZS05); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to unknown [Populus trichocarpa] (GB:ABK92556.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24798.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/R Range:  from: 16631538    to: 16635154    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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