Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->WRKY38(1)                                               ----------->HVH21               <---------MYB52(1)                                      --------->ANAC58               ---------->DOF2                                      --------->ANAC58  <---------ICU4        --------->LBD16                                 --------->ALFIN1   --------->At4g35610   <---------ARR14(2)          ------->TEIL        --------->ALFIN1 --------->WRKY12     --------->YAB1    --------->ZAT6        <-------TEIL    --------->ZAT14   --------->ANAC58  <---------ANAC58<---------ANAC46       --------->AtLEC2 <---------ZAT14   --------->ANAC58  <---------ANAC58<---------LBD16   ggatattacatgcatcccttctacagagtagagaggtgctaggcaagcgttgacagcataatgcctgcaataaaagtttccggtatgaacagtataagaa  16630900                                                     ------->MYC3                                                  <---------ALFIN1                                                --------->ANAC58                                                --------->ANAC58                                            --------->ANAC58                                          --------->CCA1(2)                                          --------->ARR14(1)                                         --------->ARR11(1)                                         <---------ARR14(2)                     <-------TEIL        --------->ARR14(2)                                     -----                  --------->At4g35610    <---------GLK1(2)                          --------->AtMYB61                  <---------At4g35610  ----------->ARR10                         --------->ANAC46            ---------->DOF2          ---------->DOF2 <-------MYC3      --------->YAB1<-----------HVH21         --------->ANAC58 --------->TOE2(2) --------->ANAC58         <-----------HVH21          -----         --------->ANAC58 --------->TOE1(2)<-------TEIL   <----------DOF2--------->ICU4  XXXXXXXXXXXX   ggcctaaacttaagcaaagcagatgcaacctatgagagaaaaagatacgcacacacatgtctttgactctcggtcataactagacaccatcacggtgcaa  16631000                                                                                                 ----                                                                                               <-----                                                                                               <-----                   <---------ARR14(2)                                                       ------->GAMYB                 <---------ATERF1(1)                                                       <---------MYB111(2)                 <------NtERF2                                                             --------->MYB46(3)                --------->RAP2.6(2)         ------>ZmHOX2a(1)                         --------->ANAC58                --------->DEAR3(1)    <---------WRKY38(1)                             --------->ANAC46          --------->AtMYB61           <---------WRKY12                                --------->ANAC58       ------->GAMYB                <-----------HVH21                               --------->AtMYB61       <---------ALFIN1             <--------ZAP1                                   <---------ALFIN1      <---------MYB55(2)   <----------DOF2 --------->TOE2(3)                        ----------->RAV1(1)      --------->MYB46(3) <---------ZAT2   --------->YAB1                           --------->ANAC46   --------->MYB46(3)    --------->ZAT2--------->WOX13(1)                          --------->MYB46(3) --------->ANAC46------>NtERF2     --------->LBD16                               --------->ANAC46---- ---->ANAC58   <---------LBD16   <---------LBD16                             --------->GLK1(2) ------ ---->ANAC58   --------->RAP2.3(1)--------->LBD16  ---------->DOF2          <---------GLK1(2)  <----- XXXXXXXX>MIR851-5P--------->ARR14(2)--------->WRKY18(1)         <-----------------------TaNAC69(2) -   gacccacaaccaccttcgccgcatccgagctttgtcccggtcaatcctaaatctaaaggaaacaaaaaacgttttcaagaatcccaccacacaacaacct  16631100 -->MYB46(1)                                                                                      === ----MYB59                                                                                   <------- ----MYB46(2)                 <---------RAP2.6(2)                                            -------- -->MYB83   <---------At4g35610  <---------ANAC58                                     --------->AHL20(2) --->AtMYB61--------->At4g35610  <---------ANAC58                                     --------->YAB1 ----MYB111(1)              <-----------RAV1(1)                                      <---------ATHB12 ------>GAMYB        <-----------GT1                           --------->CCA1(2) <---------ATHB12 ---   aaccctctaaattttgctgcattgtacaatttgtggcttctctactctatctaaacttagattagatataagcatttgaagaaatcaataatatagagtt  16631200                             --------->O2                                            ------>NtERF2                             <---------ANAC55(2)                              <---------ICU4                             <---------TGA1a                                  --------->ATHB51                             --------->TGA1a                                  --------->ATHB12                             <---------O2                                    <---------YAB1                         <-----------HVH21    --------->ANAC58            <-------TEIL                         <-----------TGA1     --------->ANAC58            ------->TEIL                  <---------HSFC1(1)          --------->AtLEC2        <---------TOE1(3)                  --------->HSFB2a(2)     <-----------HVH21           --------------->AtSPL8   ------->TEIL   <---------HSFB2a(2)    --------->WOX13(1)           --------------->AtSPL3 ======================================bZIP_DOF                       <---------TOE2(3) --ZAT6     <---------ARR11(3)    <---------At4g35610                 <---------------AtSPL8 --->GT1    --------->ARR11(3)    --------->At4g35610                <---------DOF5.7(2) ------->DOF2--------->CCA1(2)  --------->ZAT18                    --------->DOF5.7(2)      ------->TEIL   aaaagcacctctgagatattcgagaagcgtcatgtgagctaatccatcaggcaaaactctacgaacaccattaacgtacattattgcctccatgaactcg  16631300                                                        <---------------AGL15                                                       ----------------->AG                                                       <-----------------AG                                                       ----------------->AGL3                                                       <-----------------AGL3                                                       <-----------------AGL1                                                       ----------------->AGL2                                                       <-----------------AGL2                                                       ----------------->AGL1                                                   --------->ARR14(2)                                           --------->YAB1                                           <--------ATHB1                                           <------------ATHB5                                           <---------ICU4                                           --------->ATHB51                                          <---------ATHB51                            <---------ARR14(3)                                          <---------ATHB12 <---------ATHB51           --------->GLK1(2)                                          --------->ICU4--------------->AGL15         <-----------ARR10                                       <---------------AGL15                          --------->ARR14(3)                                      <-----------------AGL1                 <--------ATHB1                                      ----------------->AGL1                 --------->YAB1                                      ----------------->AG <---------ATHB12  -------->ATHB1                                      ----------------->AGL2--------->ATHB51 --------->ATHB51                                      ------------>CBF ------------>CBF      <------------ATHB5                                      <-----------------AGL3<---------ICU4   <---------ICU4                                      ----------------->AGL3--------->YAB1   --------->ATHB12                                      <-----------------AGL2<--------ATHB1  <---------ATHB51                                      <-----------------AG --------->ICU4   --------->ICU4                                      ===================================MADS_MADS    --------->ARR11(3)                 ------->TEIL         ==================================MADS_MADS     --------->ARR14(2)               --------->ZAT14    <---------MYB52(1)--------->GLK1(1)       <---------ATHB12             --------->ANAC46   *TSS  ==================================MADS_MADS     <---------ARR11(3) <---------At4g35610         --------->MYB52(1)    <---------ARR14(2)   ------------>CBF           <- --------->At4g35610<-----------RAV1(2)--------------->AGL15<------------ATHB5<------------CBF<------   ttctgctccatcttcactgaacccagacgaataactgttatccaataatggcaaatatccaataatggcaaaaatccaataattgcaaaatcttctcttt  16631400                                                   -------->ATHB1                                                   --------->AHL20(2)                                                   --------->YAB1                                                   <--------HAHB4                                                   <---------ICU4                                                   --------->ATHB51                                                  --------->ICU4                                                  <---------ATHB51                                                  <---------ATHB12      <------------------------ANAC81         ------------>CBF --------AHL20(2)                        ---------->DOF2                                      <------ ----DOF2                    XXXXXXXXXXXXXXXXXXXX>MIR157A-C    ---------->DOF2           ------------   ttaaaatgttttttttttgttttcatttttcgacaaaaaatagaaaagcccaattattaagcccataaagaagaatgtagcccaaaataagcccaatatt  16631500                                                                  <------ZmHOX2a(1)                                                                --------->ALFIN1                                                               <------NtERF2                                                             <---------DEAR3(1)                                                             --------->ALFIN1                                                             <---------ANAC46                                                            --------->ATERF1(1)                                                            <------NtERF2                                                            ------>NtERF2                                                            <---------LBD16                                                           <---------ATERF1(1)                 ----------->HVH21                        <---------DEAR3(1)               --------->HSFB2a(2)                       <---------LBD16               <---------HSFB2a(2)                    ---------->DOF2         --------->YAB1----------->GT1               --------->ARR14(2)        <---------ATHB12                            <------ZmHOX2a(1)    ------------>CBF <------------CBF   ------->GAMYB<---------ARR14(2) ------CBF   --------->ALFIN1          <XXXXXXXXXXXXXXXXXXXXXMIR4221     <-----------GT1<-----------HVH21 >CBF --------->WOX13(1)              *TSS   --------->MYB52(1)--------->ATERF1(1) <-----------GT1   ggagtcatcaatcaggtctgggacattgaaaaaactcagtaacagtctaacagaggaaacgcggcggaggaggttttacgactattttcccttcacttct  16631600                 <---------DAG2                 <----------DOF2               ------>NtERF2              --------->DEAR3(1)              --------->RAP2.3(2)              --------->RRTF1(3)             <------NtERF2             --------->RAP2.3(1)             --------->DEAR4(2)             --------->ATERF1(1)             --------->ORA47(2)            <---------ATERF1(1)            ------>NtERF2                                                                        ----            <---------RRTF1(1)                                                                   <---            <---------RAP2.3(1)                                                                  ----           <---------DEAR3(1)                                                               <------ZmHOX2a(1)           --------->ANAC46                                                               <----------         ------>ZmHOX2a(1)                                                             --------->ALFIN1       ----------->RAV1(2)                  <---------LBD16                ----------->GT1<---------ANAC46   tcatcttcttcctgcgccgcttttcaaacctattcgaccagacaaactcggaaatttcatattccatgggtaagacgaagttaaaacctgtggaggatgt  16631700        --------->ALFIN1        <---------AtMYB61                              ----------->RAV1(1) <---------LBD16                                      ----------->HVH21 ----->ZAT14                      <------ZmHOX2a(1)   --------->ANAC58                            --- ------ZAT18                   --------->At4g35610    --------->ANAC58                        ------- ----->ZAT18  <---------------------WRI1   <------ZmHOX2a(1)                   ---------->DOF2------- -----------WRI1         ---------->DOF2 <---------TOE2(3)                ----------->GT1     -------   gaactcggaagtggtggacgaagttgagaaagcagaggaagttgaggaacagagaaacgacagagaacaagaagaagagcaaaaagaagaagaggcacct  16631800  Previous    Next  AGI:  At4g34900.1    Description:  xanthine dehydrogenase. similar to ATXDH1 (XANTHINE DEHYDROGENASE 1), xanthine dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21923.1); similar to Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96752.1); similar to hypothetical protein OsJ_010898 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27415.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal (InterPro:I Range:  from: 16625560    to: 16631332    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34910.1    Description:  DEAD/DEAH box helicase, putative (RH16). Identical to DEAD-box ATP-dependent RNA helicase 16 (RH16) [Arabidopsis Thaliana] (GB:Q9SW44;GB:Q9ZS05); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to unknown [Populus trichocarpa] (GB:ABK92556.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24798.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/R Range:  from: 16631538    to: 16635154    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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