Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->GLK1(2)                                                                                <---------GLK1(2)                                                                              --------->LBD16            ---------->DOF2                             <---------GLK1(2) <---------ARR14(2) --------->YAB1<<<<<<<<<<<<<<<<<LFY    <<<<<<<<<<<<<<<<<LFY               --------->GLK1(2)        -- --------ARR11(3)                  ---------->DOF2   --------->YAB1   <-----------GT1              -- --->YAB1  --------->AHL20(2) <----------ID1    <------ZmHOX2a(2) <---------AHL20(2)           ------   taatcttactcaaataaagacagtggtctaaaaaaacaaaagaacagtggatcaaacataatctcgatttttttagaatccagaatctataagtcaaaca  16624700                                                       <---------YAB1                                                   --------->ARR14(2)                                                   --------->GLK1(2)                                                   <-----------ARR10                                                   <---------ARR11(3)             >>>>>>>>>MYB98        <------ZmHOX2a(1) --------->YAB1   <----------DOF2             --------->TOE1(2)   <---------ARR14(2) ------->ANAC58           --------->ANAC58        <---------GLK1(2)                        --------->AHL20(2) ------->ANAC58       <---------ZAT6         --------->MYB52(1)                     ----------->GT1 --->YAB1<----------DOF2  --------->ANAC58 ---------->DOF2            --------->At4g35610  <---------AHL20(2)   taagcctttttctttaacatactagagtaagaaactaggaatccaaaaaacagaatcttcatagagagtatcagttcaaaattgaattgaaaattaaact  16624800                                                                  --------->CCA1(2)                                                                 <---------ARR11(3)                --                                                                 --------->ARR11(3)                --                                                     --------->ANAC58                         -------                                                     --------->ANAC58             --------->At4g35610                      --------->ANAC58               --------->ANAC46  --------->HSFB2a(2)  <--------                      --------->ANAC46               --------->ANAC55(2)          <---------At4g35610                      --------->ANAC58               <---------ANAC55(2)      <-----------HVH21<-----                    --------->LBD16     ---------->DOF2 ------->TEIL   <---------HSFB2a(2) <---------ARR14(2)              <---------ATHB12      --------->WOX13(1) <---------ALFIN1<---------HSFC1(1) --------->WOX13(1)   tgtttgagtacttgaaatcatccccagcaattggatattaatcaaagaagttgatacgcacctctgagatattcgagaagtgtcatatgagccaatccat  16624900                                                                    <----------DOF2                         <---------SPL7                             ------>ZmHOX2a(1)                       --------------->AtSPL3                       <---------DAG2                       <---------TOE1(3)                        ------>NtERF2                       <---------------AtSPL8                   <---------RAP2.6(3)                       <---------TOE2(3)                  =================HOX2a_HOX2a                       <---------------AtSPL3            <------ZmHOX2a(2)                      <---------DOF5.7(2)  --------->ARR14(2)   --------->ORA47(1)   --------->ANAC58 --------->DOF5.7(2)    --------->ZAT14------>ZmHOX2a(2)   --------->ANAC58 <---------MYB52(1)    <---------MYB52(1)   --------->DEAR3(1)   <---------CCA1(2) ------->ANAC58    <-------GAMYB      ------>NtERF2      ==================HOX2a_HOX2a ------->ANAC58--------->ANAC58      --------->DEAR3(1) --------->ARR14(2)     ------->TEIL -->WOX13(1)   --------->ANAC58   --------->ANAC58--------->At4g35610        <---------ZAT14 -ATHB12      ------->TEIL <-------TEIL  --------->LBD16<---------ARR14(2)   --------->ZAT14 ------HVH21  --------->SPL7      --------->ANAC58<---------At4g35610        <---------ZAT18   caggcaagactctacgaacgccgttaacgtacagtaacgcctccgtaaactcatctccgatctcgccgtcctttttcagtgaacccatttctcaaattga  16625000                                                                                                    <                                                                                                   <-                                                               ----------->GT1                     --                                                               --------->ANAC58                 -----                                                               --------->ANAC58              --------                                                     --------->ANAC58                      <---------AHL20(2)                                                     --------->ANAC58                      --------->AHL20(2)                                                <----------ID1*TSS                     <----------DOF2                ------>ZmHOX2a(2)               --------->ANAC58                      ---------------                ----------->GT1                 --------->ANAC58             <-----------GT1<--------       --------->ATHB12                         --------->ANAC46     ---------->DOF2<-----------GT1<-   gagaaaactcgattgggatcgaaacaaaaacgaagatggcgaagttgattacgccaagtcaagagaagcaaaaaaggaataacattttccttttttaata  16625100                                                                              <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                      <---------ICU4          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                      --------->YAB1         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------ANAC58                                <---------YAB1          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <---------ANAC58                      ------->TEIL                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------ANAC46                   --------->ANAC55(2)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-------TEIL                        --------->ANAC58                   <------------------------ANAC81 ---------AHL20(2)                      <---------ANAC55(2)               <---------AHL20(2) --------AHL20(1)                       --------->ANAC46                 <---------AHL20(1) ------->AHL20(2)                       --------->ANAC58        --------->ZAT18 ---->YAB1                --------->MYB46(3)       <---------ICU4        --------->AHL20(2) ->YAB1      <----------DOF2            --------->ANAC55(1)     --------->ZAT14 <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) >AGL15     <---------ANAC58         --------->ARR14(2)         <---------ZAT18<xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -AHL20(2)  <---------ANAC58 --------->ANAC46      --------->YAB1        <---------AHL20(2)        -- --------AHL20(2)  <---------MYB52(1)<---------ARR14(2)         <---------ZAT14<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ataaaattcgtgttcctttccgatagcatccaccgaatgaatacgcatcttcatcatcatcacttgtgcagtcaattttttttttttttttttttttttt  16625200                     --------->ANAC58                     --------->ANAC58                   --------->MYB52(1)         >>>>>>>>>>>>>AGL25      --------------->AGL15                                                                      <---      <---------------AGL15                                                             <---------AHL20(2)     ----------------->AGL2              ----------->GT1                               --------->AHL20(1)     ----------------->AGL3            ---------->DOF2                  <-----------GT1<---------AHL20(1) -------->DOF2 ---------->DOF2<---------TOE2(3)             <---------ARR14(2)        <---------CCA1(2)   gtaaagaacccaaaatagaaagaacgaaatttaagtttgaacaaagtaaaacaattgaagcctatatgatgtttttacaatgccacttatatatttgttt  16625300                                                                                        ---------->DOF2                                                                                    --------->TOE2(3)                     <---------ANAC58                                            <-----------GT1                     <---------ANAC58                                         <---------ARR11(3)                     <---------ANAC46             --------->ZAT6              --------->ARR11(3)          <---------YAB1    <---------AHL20(2)   <---------YAB1             <---------TOE2(3)     <--        <---------At4g35610 --------->AHL20(2) <---------ICU4      <---------ANAC58 <----------DOF2 --------GT1    <---------YAB1         <---------YAB1              <---------ANAC58<---------------AGL15   aactgaattttgctgattatgtttcgtttataaattgtagtctgattagttatgactagtgtgttattgtcttgtcttaagatttactttaaaagaaatt  16625400                                          --------->YAB1   <---------ARR11(3)                    <---------YAB1             <---------ARR14(2)   --------->ARR11(3)                  --------->YAB1               --------->ARR14(2)  --------->YAB1                      --------->ICU4                --------->MYB52(1) <---------YAB1   <---------YAB1      <---------YAB1            --------->At4g35610 -------YAB1   <---------AHL20(2)   --------->YAB1     <---------AtLEC2                 <---------ZAT18   ttgatgatattgtttgttttatttttggttttgatatatgatgatgataagcgtcttgcattgctcagcataactgcttcacattctttgctcacttgaa  16625500                                                --------->ANAC58                                                --------->ANAC58                                               <-------PIF4                                               ------->PIF4                                              --------->ATERF1(1)                                              <------NtERF2                                      ----                                             ------>NtERF2                                       <---                                  <-----------GT1         <---------WRKY38(1)                    ----                      <---------ARR11(3)    <---------ANAC58                                     <---                      --------->GLK1(2)     <---------ANAC46                                   <-----           ----------->GT1      <---------AHL20(2) <----------DOF2                          ---------      <---------MYB46(3)    <---------RVE1(1)<---------ZAT18               XXXXXXXXXXXXXXXXXXXX>MIR861-5P     <--------P      --------->RVE1(1)      <---------ANAC58             <----------DOF2  --------->YAB1  <---------TOE2(3)--------->AHL20(2)    <---------DEAR3(1)   ---------->DOF2           ------->TEIL   gttagaggttgttcagaaaaaaaaaatctgatattttatctcgatggcgcgcgcatttagtcaacaaagttgctgctttgaagaaacatgtatcatgtta  16625600  Previous    Next  AGI:  At4g34890.1    Description:  ATXDH1 (XANTHINE DEHYDROGENASE 1); xanthine dehydrogenase. similar to xanthine dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21923.1); similar to Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96752.1); similar to hypothetical protein OsJ_010898 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27415.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal (InterPro:I Range:  from: 16618578    to: 16625062    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34900.1    Description:  xanthine dehydrogenase. similar to ATXDH1 (XANTHINE DEHYDROGENASE 1), xanthine dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34890.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21923.1); similar to Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96752.1); similar to hypothetical protein OsJ_010898 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27415.1); contains InterPro domain 2Fe-2S ferredoxin, iron-sulphur binding site; (InterPro:IPR006058); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal (InterPro:I Range:  from: 16625560    to: 16631332    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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