Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                -------->P                                          <---------At4g35610                                          --------->At4g35610                                     --------->YAB1                                     -------->HAHB4                                  --------->YAB1                                  <---------ICU4                                 <---------ATHB51                                 --------->ICU4 <---------MYB59                                 --------->AHL20(2)         <----------DOF2         <---------AHL20(2)        <----------DOF2 ----------GT1        --------->LBD16<---------ICU4    <---------ANAC58<---------ANAC58 ------>GT1         <---------LBD16 --------->ICU4     <---------ANAC58<---------ANAC58       <------   gtaacaaaacccttttgtgttttctggggtttgaaataattatgagcttacccaattgcttctttgtgtttttgcttctatgaacaagtagtaactgatt  16615200                                                                       <---------ARR14(2)                                                                       --------->GLK1(2)                                                                       --------->ARR14(2)                          --------->GLK1(2)                           --------->GLK1(1)                          <---------ARR14(2)                          <---------GLK1(1)                          ------->TEIL                                <---------CCA1(2)                ------->GAMYB                                     --------->AtLEC2              --------->At4g35610                                 --------->ANAC46      <---------GLK1(2)   --------->ARR14(2)                      --------->ANAC58            -------    <---------YAB1       <---------CCA1(2)               <----------DOF2            <------ZmHOX2a(1)  <---------At4g35610----------->GT1            ---------->DOF2   --------->ANAC58 ----------->GT1  < ---GLK1(2)   <---------At4g35610          ----------->GT1        --------->ANAC55(1)    --------->AHL20(2)   cgtcttctgattcttcaactgaatcgtgaatcttgtaagactgactagaaaaaagaagactttgttacacgcaaatctgtttaacaggaaaaaaaataca  16615300                        --------->TOE1(3)                        --------->TOE2(3)                 --------->YAB1                                                      --------->ANAC58              <------------CBF                                            <-------TEIL             --------->ATHB12                    ------------>CBF     --------->ANAC58            --------->ICU4                --------->YAB1            ---------->DOF2  --------->ANAC58        <------ZmHOX2a(1)                 --------->TOE2(3)<---------ANAC58         ------->TEIL ----->CBF  <---------YAB1                --------->TOE1(3)<---------ANAC58 --------->TOE2(3)   ----- ----------DOF2<---------WOX13(1)    ------------>CBF<---------ATHB12 --------->ANAC58--------->TOE2(3)   atctttttgaggagatgattgataaaccttagcacaactctcaatcttaaattcaatcgtttcgtctcacaaaagctacataaatgaacgtcaaattttc  16615400                                      --------->ANAC46                                      --------->ANAC58                                      --------->ANAC58                                   <---------ZAT14           <---------WOX13(1)                                   --------->ZAT14           <--------P                                   <---------ZAT18          <-------GAMYB                                   <-------TEIL            <---------MYB46(3)                                   --------->ZAT18         <------MYB46(1)<---------TOE2(3)                               <---------------AtSPL8      <------MYB83--------->DOF5.7(2)                               --------------->AtSPL8     <---------AtMYB61           <---------CCA1(2)                               --------->DAG2             --------->MYB59<---------DOF5.7(2)         ----------->GT1      ---------->DOF2           <---------MYB52(1)<---------TOE1(3)        ----------->GT1    --------->ANAC58   <---------ANAC55(2)     --------->TOE1(3) ---->YAB1                 --------->ANAC58   --------->ANAC55(2)     --------->TOE2(3)            --   atacttgtatgagttaaaaaatgtaatgcaagtaaagtacactcaaatatgtaacacagtttggttgattttcgttaacgatgttatcaaatctcgttta  16615500                      <---------WRKY18(1)                     --------->WRKY12                     --------->WRKY45                     --------->WRKY38(1)                     ----------->HVH21                    --------->DOF5.7(2)             <------------CBF                                    --------->ARR14(2)            --------->ATHB12  <-----------GT1                 <---------ANAC58   XXXXXXXXXXXXXXXXXXXX  ------------>CBF <-------GAMYB <----------DOF2              <---------ANAC58  <---------CCA1(2) --------->ANAC58 <---------ANAC58                  --------->ATHB12 <<<<<<<<<TBF1              <---- --------->ANAC58 <---------ANAC58                  <---------MYB46(3)  <<<<<<<<<TBF1     <---------YAB1 -------->DOF2    <---------ANAC46     <----------DOF2<--------P <---------ARR14(2)    <---------YAB1   gtaaagcaatcgagttattggcgttgaccattttcctttctctttctctagccatggttgctctgcgtttcttcttcttctcatctcttcttattcttct  16615600                                ------>ZmHOX2a(2)                               --------->At4g35610                               <---------GLK1(1)                               <---------At4g35610                              --------->ARR11(3)                              <---------AGP1                                    <---------YAB1                         --------->At4g35610                                   -------->P                        --------->MYB52(2)                                  <---------HSFC1(2)                        <---------MYB46(3) <---------ARR14(2)               --------->HSFC1(2)           --------->ARR11(3) <---------ARR14(2)     <---------At4g35610    --------->At4g35610         --------->ANAC58<-------GAMYB    <---------At4g35610       <------ZmHOX2a(2)  <----------DOF2    <-----------HVH21    --------->At4g35610   <---------HSFB2a(2) X>MIR831--------->ANAC58<---------At4g35610<------ZmHOX2a(2)   --------->HSFB2a(2)                 < -----YAB1 <---------ARR11(3) --------->ARR14(2)     --------->At4g35610--------->ANAC46 <---------ARR11(3)   tattctttctcaagctcttattatgtcagttggatctgcctctcagatcaggcttagctcaacgttctcgatccaagaagctaccattgaagacattaga  16615700                                 <---------ANAC58                                 <---------ANAC58                                            <-------                                 <---------ANAC46    --------->ANAC58                        --------                                --------->ZAT2       --------->ANAC58                  <-----------HVH21  <----------DOF2               <---------ZAT2       --------->ANAC46              --------->ANAC58 <---------ANAC46         ---------->DOF2        <---------HSFB2a(2)               --------->ANAC58 < <---------ANAC58      --------->TOE2(3)         --------->HSFB2a(2)          --------->ANAC46      - <---------ANAC58 <---------MYB52(2)          ------->TEIL        --------->YAB1 <---------ALFIN1   - -----------------------TaNAC69(2)           <---------CCA1(2)    --------->TOE2(3)--------->ANAC46 -   gttgctttcaacgagaaacgactaacatcaaagcagcttgtggagttgtatctcgaagcaatctccaaacttaatccaatactccacgcagtcatcgaga  16615800                    --------->ZAT2         <---------ANAC58         <---------ANAC58         <---------ANAC46    ===============================HOX2a_HOX2a    ==============================HOX2a_HOX2a    ------>ZmHOX2a(1)    ===================HOX2a_HOX2a                                                        --------->ARR14(2)  ----------->RAV1(2)      <------ZmHOX2a(2)                          ------>ZmHOX2a(1)   <---------ARR14(2) --HSFB2a(2)    ------>ZmHOX2a(2)                                     <---------CCA1(2)   <---------- ->HSFB2a(2)--------->WRKY38(1)                        --------->ANAC46      <---------AtLEC2 ---------ARR14(2)  <---------ZAT2             --------->TOE1(3)--------->HSFC1(2)       <---------MYB52(1) -------->ARR14(2) --------->AtLEC2        ----------->HVH21    <---------HSFC1(2)--------->ALFIN1 -------->GLK1(2)  --------->ANAC46      <---------ANAC55(2)    <---------At4g35610     --------->LBD16 ------>TEIL--------->WRKY12------>ZmHOX2a(2)  --------->TOE2(3)--------->At4g35610   <---------LBD16   cgaatcctgatgcgttgatccaagcagagatcgcagacagagaacgtgaccttaaaaacaccactaagcttcctatcttgcacggtgttccggttcttct  16615900                                                                  <---------ANAC58                                                                  <---------MYB46(3)                                                                  <---------ANAC58                                                                  --------->MYB52(2)                                     --------->ZAT2             <-----------HVH21                                     <---------ZAT2            <------MYB83          <-------GAMYB                                   --------->ANAC46            <------MYB46(1)      --------->ALFIN1                         --------->TOE2(3)                    --------->MYB59    --------->LBD16                       --------->ANAC58                <---------ANAC58         <---------ANAC46                   <------ZmHOX2a(1) ----------->RAV1(2)  <------MYB46(1)      <---------LBD16             -------->P--------->ANAC58   <---------ANAC58<------MYB83        <---------O2         <---------ARR14(2)        --------->ANAC58    <---------ANAC58       ===============MYC_MYB         <-----------ARR10         --------->ANAC58    <---------ANAC46   <---------HSFB2a(2)         <---------ARR11(1)      <---------ALFIN1      <---------AtLEC2<---------ANAC46         <---------ARR11(3)   --------->ZAT6       <---------ANAC58    <---------ANAC58         --------->ARR14(2)   --------->ANAC46     <---------ANAC58    <---------ANAC58----------->GT1 -ARR10 <---------CCA1(2)--------->TOE1(3)<---------ANAC58<---------MYB46(3)  <---------TGA1a   caaggattccatatctaccaaggacaagcttaacaccacggctggctcgtttgccttgcttggttcggtcgtggctcgagacgcgggtgttgttaaaaga  16616000                                                                                           <-------MYC2                                                                                           ------->MYC3                                                                                           <-------PIF5                                                                                           ------->PIF5                                                                                           ------->MYC4                                                                                           <-------MYC4                                                                                           ------->MYC2                                                                                           ------->PIF4                                                                                           <-------PIF4                                                                                           <-------MYC3                                                                                          --------->PIF3(3)                                                                                          --------->TGA1a                                                                                          <---------PIF3(3)                                                                                          <---------TGA1a                                                                                          ===========                                                                                          --------->O2                                                                                         ------------                                                                                        <------------OsbHLH66                                                                                       <---------ZAT18                                                                                       --------->ZAT18                                                                                       --------------                                                                                      ---------------                                                                                      <--------------                                                                                     --------->At4g35610                    ------>ZmHOX2a(2)                                                <---------At4g35610                  --------->ARR11(3)                                              <------MYB46(1)                  <---------ARR11(3)                                              <------MYB83              <---------ANAC46                                                  ====================MYC_MYB            <---------ZAT14                                                     <--------P<---------O2            <---------At4g35610                                          <-----------RAV1(2)        <-----------RAV1(1)                                   <----------DOF2  =====================MYC_MYB     --------->ARR14(2)                                       ======================================bZIP_DOF     <---------ARR14(2)      --------->ANAC58                ------>ZmHOX2a(2) <-------GAMYB     --------->GLK1(2)       --------->ANAC58              <---------ARR11(3) --------->ATHB12<------    <---------GLK1(2)      ---------->DOF2                 --------->ARR11(3) <---------MYB46(3)   ctgagagaatctggtgctgtgatcttgggcaaagccagtttaagtgaatgggctcattttcgatctttctccatcccagatggttggagcgcacgtggcc  16616100  Previous    Next  AGI:  At4g34870.1    Description:  ROC5 (ROTAMASE CYP 5); peptidyl-prolyl cis-trans isomerase. Identical to Peptidyl-prolyl cis-trans isomerase CYP18-4 (CYP18-4) [Arabidopsis Thaliana] (GB:Q42406); similar to ROC3 (rotamase CyP 3), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G16600.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN77164.1); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; (InterPro:IPR002130) Range:  from: 16614332    to: 16615318    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g34880.1    Description:  amidase family protein. similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G07360.2); similar to amidase, putative [Brassica oleracea] (GB:ABD65012.1); contains InterPro domain Amidase signature enzyme; (InterPro:IPR000120) Range:  from: 16615554    to: 16617429    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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