Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100   --------->At4g35610 <---------ZAT14 --------->ZAT14      ------->TEIL                                                           <------- ------ARR10   --------->LBD16       ---------->DOF2                                    <---------At4g35610 -->ARR14(2)   ------>NtERF2     --------->TOE2(3)                          <-----------GT1  <------- ---ARR14(2)  --------->ANAC46   --------->TOE1(3)           --------->GLK1(1)          --------->At4g35610 ---GLK1(2)  <---------LBD16    ----------->RAV1(2)          <---------GLK1(1)    --------->DAG2 >DEAR3(1) <-----------GT1     -------->P    --------->STY1(2)   <---------YAB1  ---------->DOF2  <--   ctcagcactattttttccgccatgaaccgttgcaacctgaaaagcttagctagtcagaaccagaattcttatcgaattttacaaaaagtcagcaacttta  16605600                                                                                              -------                                                                                 <---------GLK1(1)                                                                                 --------->GLK1(1)                                                                                <---------ARR11(3)                                                                                <-----------ARR10                                                                                <---------ARR14(2)                                                                                --------->ARR11(3)                                                                                --------->ARR14(2)                                                                               <---------HSFB2a(1)                                       --------->YAB1                          --------->HSFB2a(1)                                     --------->ANAC58                    --------->At4g35610--------- ---DOF2                   ----------->GT1                           --------->TOE2(3)--------->At4g35610 --DAG2                <---------ICU4--------->ANAC58               ----------------->AGL1  ------>ZmHOX2a(1) -------ZAT18    --------->TOE2(3)   --------->ANAC46            <---------MYB52(1)   <---------At4g35610   tgcactctaatgaaacaaaacttaaaaattagttaaaacaagcaaaacccttcgctcagaaatttcagttacctcatcggaagatttccgcttcctgaaa  16605700                                               ----------->RAV1(1)                                              --------->MYB46(3)                                              --------->REM1(1)                                            ----------->RAV1(1)                                --------->ANAC58     --------->YAB1                           <------NtERF2  --------->At4g35610 <----------DOF2 --------->ANAC58    ----------->HVH21 --->DOF2        --------->ANAC58   --------->At5g28300             --------->GLK1(2) >LBD16        ---------->DOF2  --------->ANAC58  --------->YAB1   <---------GLK1(2) --------->MYB46(3)   gtactttggcaataagcgaaagcaatggcagagaacgcagtgacagcaacaacaataagaatcaaaccagaatcgatagaagctctaacaactaaacgag  16605800                                      <------NtERF2                                     ------>NtERF2                                          ---------                                    <---------ANAC46                               --------->ANAC58                                   <------NtERF2                                   --------->ANAC58                                  --------->LBD16                                ------->GAMYB<------                                  ------>NtERF2                                 --------->MYB46(3)                                 --------->ANAC46                              --------->ANAC58                                 --------->LBD16                               --------->ANAC58                                <---------LBD16                               ------->GAMYB<---------At5g28300                             --------->ARR14(2)                              --------->MYB46(3)<-----                          <---------ANAC58                                   <---------MYB55(2)<-----                          <---------ANAC46                              --------->YAB1     <---------LBD16              <----------ID1 <---------ARR14(2)             <------ZmHOX2a(1)<---------MYB111(2) <--- <------ZmHOX2a(2)        <---------ANAC58            <------ZmHOX2a(1)<---------YAB1     --------->MYB52(1)   gcgatcgaattgaagaacgacgagaattgcgtttcccggcgcgagttcgaagatgaggagaaggacggagactatgacaacaaccaagaaaatcacggcg  16605900                                                                     <---------At4g35610                                                         <------ZmHOX2a(2)                                                         --------->CCA1(2)                                                        --------->GLK1(2)                                                        --------->ARR11(3)                                                        <---------ARR14(3)                                                        <---------ARR11(3)                                                        --------->ARR14(3)                                                        <---------ARR14(2)                                                        --------->ARR14(2)      --------->ALFIN1                                                      ----------->ARR10       <---------MYB46(3)                      --------->LBD16       ----------->GT1          --------->At4g35610  --------->TOE2(3) >ANAC46<---------LBD16                    --------->MYB59------>ZmHOX2a(2)  <---------DEAR3(1) ---LBD16           <---------LBD16        <---------TOE2(3) <---------MYB52(1) <---------ANAC46 ----ANAC46<------NtERF2                   --------->DAG2--------->ARR14(1)  <---------AtMYB61 ----DEAR3(1)      --------->MYB52(1) <---------TOE1(3) --------->AGP1       --------->ALFIN1-------- ---NtERF2--------->LBD16             <---------TOE2(3) <---------AGP1 <---------REM1(1) --------->MYB46(3)   gagagtagaagccggaagaatcaccggagagtacgaagttaaggtaaggtatttagaagatctggtagtggagatgaaggtggtggaggtaacctccatt  16606000                                                                    --------->MYB46(3)             <-                                                                  --------->MYB52(1)       --------->TCP16(1)                                                                 ------->GAMYB             --------->TCP11(2)                                                                 --------->TOE1(2)         --------->TCP20                                                                 ====================================                                                                --------->MYB46(3)         <---------PCF2                                                              --------->MYB52(1)           --------->PCF5                                *TSS                  --------->CCA1(2)                   <---------TCP16(2)                              --------->DAG2         --------->ARR14(2)                  <---------ZAT18                             ---------->DOF2         <---------ARR14(2)             =================    <---------ANAC46      <------ZmHOX2a(1)         <------ZmHOX2a(1)               <----------DOF2<- ->ATHB12         --------->ATHB12              --------->ALFIN1<---------MYB52(2)  <------------CBF   ggagaggcttagagagaaaacgattagaggataaagcttcagagaaggaagtgaggatatgaaataacgaacgactctcttcttcgcattgtggacccct  16606100              --------->MYB46(3)            --------->MYB52(1)           <---------ARR14(2)        <---------ANAC46   <---------ANAC58   <---------ANAC58   <---------bZIP60(2)                                               <---------YAB1   <---------ANAC46            <---------TOE2(3)                   <---------ICU4   --------->TGA1a            <---------DOF5.7(2)                  -------->HAHB4   <---------TGA1a  <------NtERF2                                  --------->YAB1   <---------ANAC55(2)       <---------WRKY38(1)                  --------->ICU4   --------->ANAC55(2)       <---------WRKY45                   --------->YAB1  --------->ATHB12   --------->O2    <---------RAP2.6(3)                          <---------ICU4 <---------YAB1   <---------O2    <-----------HVH21                       --------->AHL20(2)  <---------AHL20(2)   <---------ANAC55(1)       <---------WRKY12              <---------AHL20(2)  --------->AHL20(2) --------ANAC58   --------->RAP2.6(2)        --------->AHL20(2)<---------AHL20(2)           <-------- ============MYC_MYB<---------MYB52(1)       <---------AHL20(2)--------->AHL20(2)<------------CBF ============bZIP_DOF       --------->DOF5.7(2)            <---------AHL20(1)  --------->AHL20(1) --------ANAC58   --------->ATERF1(2)<---------ANAC46      --------->AHL20(1) --------->AHL20(2)   tgcttacgtggcataaacggccgtcaagtcgtcaacgttgtttatattaaaaaaaacatattttattaattatgctaaaattttattgggcctgggtccg  16606200                                                                                    --------->ARR14(2)                                                                                 <---------ANAC46                                                                                --------->ATERF1(1)                                                                                <------NtERF2                                                                               *TSS <---------ARR14(2)                                                                               ------>NtERF2                                                                              ----------->HVH21                                                                             --------->ATERF1(1)                         --------->LBD16                                     <------NtERF2                        <---------ANAC46                                     <---------------------WRI1                      <------ZmHOX2a(2)                                      --------->RAP2.3(1)                     <---------ARR14(2)                                     <---------RAP2.3(1)                     --------->ARR14(2)                                     ------>NtERF2                   <---------DEAR3(2)             --------->HSFB2a(2)       --------->LBD16                   ----------->ARR10              <---------HSFB2a(2)      --------->ATERF1(2)                  --------->ETT(1)             --------->GLK1(2)           <---------ATERF1(2)                <-----------HVH21              --------->ARR11(3)          <---------DEAR3(1)          <---------GLK1(2)                   --------->GLK1(1)            --------->DEAR3(1)          --------->ARR14(2)                  <---------GLK1(1)           <---------LBD16          --------->ARR11(1)           <---------ANAC46                   --------->ATERF1(1)          <---------ARR14(2)           <---------LBD16                --------->ARR14(2)     --------         ====================HOX2a_HOX2a<---------LBD16               ------->TEIL  <---------GLK1(2)         <------ZmHOX2a(1)             <---------HSFB2a(2)    <---------ICU4<---------ATERF1(1)     <---------ARR14(2)------>ZmHOX2a(2)--------->LBD16       ------>ZmHOX2a(2)<---------ATERF1(1)     --------->ARR14(2)<---------LBD16<---------LBD16       --------->ARR11(3)--------->DEAR3(1) -PCF2   =====================HOX2a_HOX2a--------->LBD16    <---------ARR11(3)<---------DEAR3(1)   agtagtggataggattcgggtcggatccgggtttttgttttccgggggaaatctagaaatttgatcttgacgaatcgccggcgacggattctcagacgct  16606300                              --------->MYB46(3)                            --------->MYB52(1)                                       <---------HSFB2a(2)                   --------->MYB59                          <------MYB83  <----------DOF2         <--                   --------->MYB111(1)                      <------MYB46(1)          --------->HSFB2a(2)      <------MYB83<-----------RAV1(2)                      <---------TOE1(2)         --------->HSFC1(1)      <------MYB46(1) <--------P         <-----------GT1  <---------MYB52(1)<-----------GT1  <------- ->ANAC46       <-----------HVH21    --------->GLK1(1)  --------->ATHB12---------->ID1     ----------   gctatggaaggtgttatgggtcaggtagagaaacggccgatttctaccatcgtcttcatcgttggtactattttgtctttactatttctcgaattgtgat  16606400                                                   ---------->CDC5                                                --------->At4g35610                                         ---------->DOF2                <---------ANAC55(2)        <-   <-----------GT1                   --------->AtLEC2                   --------->ANAC58          --- -------AHL20(2)                   --------->CCA1(2)                    --------->ANAC46          <-- --YAB1                       ---------->DOF2   <---------ZAT2 ----------->RAV1(1)    ----------->GT1 ->GT1 <<<<<<<<<TBF1         <---------AHL20(2) <---------At4g35610     --------->ANAC58         <---   ttttttttcttcttctaatgggtttgtgtattaaaagctatgcaaaaggaagctcagcctctgatcaacagattacgcctcgttgaagaagttaatactc  16606500  Previous    Next  AGI:  At4g34830.1    Description:  binding. similar to EMB2745 (EMBRYO DEFECTIVE 2745) [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47298.1); similar to hypothetical protein OsJ_029682 [Oryza sativa (japonica cultivar-group)] (GB:EAZ15473.1); similar to hypothetical protein OsI_031823 [Oryza sativa (indica cultivar-group)] (GB:EAY77864.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16599610    to: 16606032    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34840.1    Description:  ATMTN2; methylthioadenosine nucleosidase. similar to ATMTN1, catalytic/ methylthioadenosine nucleosidase [Arabidopsis thaliana] (TAIR:AT4G38800.1); similar to unknown [Populus trichocarpa] (GB:ABK92454.1); contains InterPro domain Nucleoside phosphorylase; (InterPro:IPR000845) Range:  from: 16606279    to: 16608029    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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