Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                     <---------AHL20(2)                                  --------->AHL20(2)   ---------->DOF2  ---------->DOF2     <---------ARR11(3)          <---------TOE2(3) ------------AGL15    --------->ARR11(3)    --------->AHL20(2) ----------->AGL15    --------->GLK1(2)     <---------AHL20(2) ------------>AGL3   --------->RVE1(1)    <----------DOF2 -->ARR11(3)         --------->CCA1(1) <---------ARR11(3)           ---------->DOF2                 < -->GLK1(2)        --------->AHL20(2)  --------->ARR11(3)----------->GT1       --------->TOE2(3)  <-- ---ARR11(3) --------->ANAC58 <---------AHL20(2) ---------->DOF2   <------ZmHOX2a(1)             <--- ->RVE1(1)   --------->ANAC58--------->AHL20(2)<---------YAB1    --------->MYB59                 ----   taaaaaaagaaacacaagaaaaaaaatcttataaaatttaaaatcttttattaaagaaaaagaaaattaggaaagcgcaaaccttggttctcgctggtga  16573300                                                                                        --------->DOF5.7(2)                                                                                        <---------MYB52(1)                                          --------->ZAT14                --------->HSFB2a(1)                                          --------->At4g35610           ------->TEIL   <-------GAMYB                                          --------->LBD16               --------->ARR14(2)                                          <---------At4g35610           --------->GLK1(2) ---------YAB1                           --------->ANAC46         --------->TOE2(2)   ----------->GT1 -------ICU4                            <---------LBD16      ---------->DOF2    <---------ZAT2 ------YAB1                            ------>ZmHOX2a(1) <---------ZAT6 <---------ARR14(2)     <----- ----->ICU4                   ---------->ID1--------->DEAR3(1)    --------->TOE1(2)   <---------MYB46(3)   tgattatcgatcgatcgatgaaacacaaatttgtcttcttcctccgcagtcgaattgtagttttaaagcctacgaatctgccaactggtcgttaatttca  16573400                                                                         <---------ARR14(2)                                                             --------->ABI4(1)                                                            --------->ANAC46                                                            <---------DEAR3(1)                                                            --------->RRTF1(3)                                                            --------->RAP2.3(3)                                                            --------->DEAR3(1)                                                            --------->RAP2.3(2)                                                           --------->ORA47(2)                                                           --------->RAP2.3(1)                                      <-----------HVH21    --------->DEAR4(2)                                ------>ZmHOX2a(1)          --------->ATERF1(1)                     <-                            <---------ARR14(2)             --------->ERF1--------->GLK1(2)        <--                            --------->ARR14(2)         ------>ZmHOX2a(1) --------->ARR14(2)     <----                         --------->ANAC46       --------->YAB1  <-------GAMYB       ---------->DOF2<-                        <---------LBD16         <---------ICU4<------NtERF2    <---------DEAR3(1)----                        --------->LBD16        <---------ATHB12--------->DEAR3(1) ----------->HVH21<-                       <---------ANAC58        --------->ICU4------>NtERF2   ------>ZmHOX2a(1)  -----                       <---------ANAC58 <---------ANAC46  <---------RAP2.3(1)======================== ------GT1             <---------ANAC46<---------MYB52(1) <---------ATERF1(1)========================   ctatccctctcttggccatagtcttccgcgcatccttctccgtcgtgtaatcatctccttcgccgccgttgaaagaatccttcggtgaaagcgtttcggt  16573500      <----------DOF2     ------>ZmHOX2a(2)    <------ZmHOX2a(2)   --------->ARR14(3)   --------->ARR11(3)   <---------ARR14(3)   <---------ARR11(3)   --------->ARR14(2)   --------->AGP1   <---------ARR14(2) ----------->ARR10                                                                 ---------->DOF2 --------ANAC58                              --------->ZAT14             <---------O2--------->ANAC58 ----NtERF2                                  --------->ZAT18             <---------TGA1a -----DEAR3(1)----------->GT1                <---------ZAT14             =====================bZIP_DOF --------ANAC46                              <---------ZAT18         <-----------HVH21 -->NtERF2    <---------ANAC46           --------->DAG2      <---------YAB1      --------->ANAC58 --------ANAC58                         ---------->DOF2  <---------WOX13(1)      --------->ANAC58 ---->ALFIN1------>ZmHOX2a(2)           ===========================================bZIP_DOF ==========HOX2a_HOX2a          --------->ANAC58       --------->ATHB12  --------->O2--------->ANAC58 ===========HOX2a_HOX2a         --------->ANAC58     <---------WOX13(1)  --------->TGA1a   ggcgagatctttgatcgtgtgaaattagggagtcacgaactaaaaagtgaactcgattgattgaagattgttgtcacgagagaacgaaagcacatcagtg  16573600                                                                                                 <---                                                                                                -----                                                   >>>>>>>>>TBF1                                -----                                             >>>>>>>>>TBF1  ---------->DOF2                    ------                                          >>>>>>>>>TBF1   --------->CCA1(2)                    ------                                       >>>>>>>>>TBF1   ----------->GT1   <---------YAB1        <-----                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                    ------                                ---------->DOF2 >>>>>>>>>TBF1     ----------->GT1    *TSS>>>>>>>>>TBF1         --------->LBD16    ---------->DOF2------------------------>ANAC81  <---------GLK1(1)--------   atcagtctctcagggaaattgcaggtatgaaaaagaaagaagaagaagaagaagaagaagataaaagatggtattttgatttctcaacgaagaagaagat  16573700 ----TEIL               --------->ANAC58 ---->CCA1(2)           --------->ANAC58 ---->ARR14(1)    --------->ANAC58 --->ARR11(1)     --------->ANAC58 --->ARR14(2)     --------->ANAC46 ----ARR14(2) <---------AHL20(2)            <------------CBF                                        - --->TOE1(2)  --------->YAB1         ---------->DOF2    <-----------GT1          <------------CBF  -- --->ARR10  <-----------TBP   <------------CBF      <----------DOF2       ---------->DOF2         ---   acgagagttggagtatttataagcaaacgctccattgaaaaaaggaaattgtctcttttttctatgttttgcgaagaaaaggaaattgatcaatgtaaca  16573800                                                        <---------AHL20(2)                                                        --------->AHL20(2)                                                       --------->AHL20(1)                                                 --------->ANAC58                                                 --------->ANAC55(2)                                                 --------->ANAC58                  <---------MYB52(1)             --------->ANAC46                 <-------GAMYB                   <---------ANAC55(2)                --------------->AGL15           ------>MYB46(1)                                     -                <---------------AGL15           ------>MYB83                                   ------              <---------DOF5.7(2)             --------->TOE2(2)                            <-------GAMYB ---------->GT1----------------->AGL1   <-----------GT1<---------AHL20(1)          <XXXXXXXXXXXXXXXXX ------->DAG2 <---------At5g28300     <---------ANAC58 <---------AHL20(2) --------->YAB1  --------->MYB52(2) ------->DOF2<-----------GT1          <---------ANAC58 --------->AHL20(2) <-----------GT1 <---------MYB46(3)   aaaagtcaaattaagttaccgttacaagaacaaatatgtttcttactacctacgtaatttatttgatgttcacaaatcacaatttagagtgtttgttgaa  16573900                                                                                 --------->ANAC46                                                                                 --------->ANAC58                                                                                 --------->ANAC58                                                                           ---------->DOF2                                   --------->ZAT6                       --------->YAB1                              ----------->GT1                          <---------YAB1                            ---------->DOF2                            <---------TOE2(3) -------->CCA1(2)      --------------->AGL15                          <-----------GT1 ---->DOF2          --------->ANAC58           ---------->DOF2  --------->ANAC55(2)                 - XXXMIR2934         --------->ANAC58          --------->YAB1    <---------ANAC55(2)        ----------   agagatggaacatcaacaaaacaagccttgtaaagtaacacaaatctataaaagtcaaacctagtcatgtattaacataatgctcgaaacagaatgaaaa  16574000                                                    <---------ALFIN1                                                    --------->ANAC58                                             --------->ANAC46                                        --------->ANAC46                           --------->AtLEC2                                      <-----------GT1                              --------->ANAC46               --------->YAB1      <---------ARR14(2)                       <---------------AGL15              <<<<<<<<<ARR2        --------->ARR14(2)        ------>ZmHOX2a(1)     --------->ANAC58              <<<<<<<<<ARR1   --------->AtLEC2      --------->ANAC58        <---------DAG2    <------  XXXXXXXXXXXXXXXXXXXX>MIR167C--------->ANAC58      --------->ANAC46  --------->ZAT6          <------ -------->ANAC46              --------->ANAC46   ------->GAMYB        <-----------GT1         <------ ->GT1   --------->YAB1       --------->ANAC58 --------->ZAT14      ------->TEIL   --------->ANAC58   atatgccactagcacaatcttactcaaactacaagcaaattcacaacacaacacacacatctcctaaacgtatcactacctttccaagcaaaaatttcgt  16574100                                                                                        <---------At4g35610                --------->ANAC46                                                        <------NtERF2                --------->ANAC58                        <---------bZIP60(2)             --------->At4g35610   --------->ANAC46      ---------->DOF2      <---------MYB52(1)                      <---------DEAR3(1)   --------->ANAC58  <------NtERF2          <---------ANAC46                          <---------RAP2.6(2)   --------->ANAC58--------->RAP2.3(3)      <---------ANAC58                <---------ANAC58 ---ANAC46      --------->ANAC58            <---------ANAC58                <---------ANAC46        < ---ANAC58--------->ANAC58             <---------At4g35610          <-----------HVH21--------->RAP2.6(3) ---ANAC58--------->ANAC58             --------->At4g35610 ----------->GT1  <---------ANAC58 --------   agaactcgccacaagcacaagcccccataaaccagttgctctgcttccgtttgtaatgacatggtcaaaatgtcaatggcttatctagtcggcttactct  16574200  Previous    Next  AGI:  At4g34730.1    Description:  ribosome-binding factor A family protein. Identical to Probable ribosome-binding factor A, chloroplast precursor [Arabidopsis Thaliana] (GB:O65693;GB:Q8H0V9); similar to unnamed protein product [Vitis vinifera] (GB:CAO47263.1); contains InterPro domain K homology-like, alpha/beta (InterPro:IPR015946); contains InterPro domain Ribosome-binding factor A; (InterPro:IPR000238) Range:  from: 16569401    to: 16573685    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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