Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                <----                                                                                                -----                                          ------->GAMYB                              <-------TEIL<---                                       --------->MYB52(1)                           --------->CCA1(2)                                 --------->MYB46(3)                                --------->ARR11(1)        --------->ATHB12        ------>MYB46(1)                                    --------->ARR11(3) -------->YAB1                  ------>MYB83                                   ---------->DOF2  <---- ---------ICU4                 --------->MYB52(1)                        ----------->GT1  <---------ARR14(2) --------YAB1                 --------->TOE1(2)                      --------->GLK1(2)    --------->ARR14(2) ----->YAB1                   --------->TOE2(2)                      <---------ARR11(3)   --------->GLK1(2) -----YAB1     <-------TEIL  --------->MYB46(3)         ----------->GT1 --------->HSFB2a(2)     <---- -DAG2  --------->ATHB51     <---------MYB52(2)--------->YAB1        --------->ARR11(3)  <---------GLK1(2) --DOF2<---------YAB1   --------->ANAC46 --------->ANAC46----------->GT1<---------HSFB2a(2) <--------   catcatcacattattgattcattcaccagaaaccaacgactcaacggaatcacaagagaagataaaaacaaaatctagaaaaaaagatacagaatcggga  16548200                                         <---------At4g35610                                         --------->ZAT2                                         --------->At4g35610                                      <---------ZAT2                                      --------->ZAT2                                      <---------At4g35610 --------->ANAC58                     --------->At4g35610 --------->ANAC58                    <-----------RAV1(1) --------->ANAC46                  ----------->RAV1(2) --->ZmHOX2a(2)                --------->DOF5.7(2)                        <---------ANAC58 -----ARR11(3)                --------->TOE1(3)                           <---------ANAC58 ---->ARR14(2)                <----------DOF2                             <---------ANAC46 ---ZmHOX2a(2)                --------->TOE2(3)                          <---------STY1(2) -------ARR10              <---------ARR11(3)   --------->ANAC58         <---------ZAT2 -----ARR14(2)             --------->ARR11(3)   --------->ANAC46         --------->STY1(2) -LBD16           ---------->DOF2<-----------GT1--------->ANAC58     --------->ZAT2<---------YAB1   tctaagcaaatgggcaaaccaaaagttaagaactttaacctgctgctgtctcgcaacttgttctctcaacctgctagcttgttttctaattgcatccatt  16548300                        <-----------ARR10                        --------->ARR11(3)                        --------->ARR14(2)                        <---------ARR11(3)                          --------->ZAT18                   <-----------GT1                         <----------DOF2      <---------ANAC46            <---------ARR11(3)                             <---------DAG2       <---------ANAC58       <------ZmHOX2a(2)<---------ARR14(2)      ------>ZmHOX2a(1)   <---------ZAT18    --------->MYB46(3)      --------->AGP1   <---------CCA1(2) <----------DOF2<---------ALFIN1        <---------ANAC58   cttcaccagatcaagagctattcacaaatcttcttccttctctctttctcctattcttccactttacgagttccctccgattacttggaacaactcagag  16548400                                 --------->At4g35610                             <----------CDC5                             --------->ALFIN1                            <-------GAMYB                --------->TOE2(3)<---------At4g35610               ----------->GT1--------->WRKY38(1)        <-------TEIL  <---------ICU4                                          --------->CCA1(2)       --------->CCA1(2)   <---------ANAC58                    --------->ANAC46    ---------->DOF2       --------->GLK1(2)   <---------ANAC46               *TSS<---------------------WRI1      --------->ARR11(1)   <---------ANAC58           <----------DOF2    ---------->DOF2   aagacagagattcgaaatcgtcaaaaatggcgttgagctcagaacaaatttctctgctttcgaacacgaagaaatcaaagatagacaaagtctctgtttc  16548500                                                                       --------->AHL20(2)                                                                       <---------AHL20(2)                                                 <---------AHL20(2)  --------->AHL20(2)                                                 --------->AHL20(2)<---------AHL20(2)                 <---------ZAT18          ----------->GT1         --------->AHL20(2)              ---            <------------CBF      <------------CBF               ----------->TBP                  ---          <---------YAB1  --------->YAB1<---------ANAC58    --------->ANAC58                 --------     ----------->GT1     <---------YAB1 <---------ANAC58    --------->ANAC58  --------->At4g35610 ---   accaagaaggttaatattgggctctctataatagcccattgggcttgaaaataaaatccagtaagctataaatttatatcatctcaaaataactaaaaag  16548600                           --------->ANAC58                         ---------->DOF2                       *TSS--------->ANAC58                               <<<<<<<<<TBF1 ------>ANAC58    <---------AHL20(2)                                   <<<<<<<<<TBF1            <---- ------>ANAC58    --------->AHL20(2)                               <----------DOF2            <------ -->DOF2        ----------->TBP             <----------DOF2     --------->RAP2.6(2)  --------->ZAT14 ------>ANAC46<-----------TBP  ----------->GT1            <---------REM1(1)     ------>ZmHOX2a(1)   acgcaaaaccctagacatatataaatgaaaagccagtgaattagggctttctctcacttgttgaagccgcttcttcttcttcctcactgtagctcgtcgt  16548700                                     <XXXXXXXXXXXXXXXXXXXXMIR399A                                     <--------P                                     <XXXXXXXXXXXXXXXXXXXXMIR399D                  --------->TOE2(3) <XXXXXXXXXXXXXXXXXXXXMIR399F               <---------ARR11(3) <---------MYB46(3)         --------->HSFC1(1)      --------->ETT(1)         <---------HSFC1(1)    <-----------HVH21                    <---------ANAC58         --------->HSFB2a(2)  <---------MYB46(3)                    <---------ANAC58  <---------ALFIN1--------->TOE1(3)----------->GT1                  <---------ANAC46  --------->REM1(1)     <---------ICU4                          <---------ANAC58 --NtERF2<---------HSFB2a(2)  ----------->HVH21                 <---------ANAC58 ---DEAR3(1)   --------->ARR11(3)<---------ANAC46    <---------CCA1(2)     <-----------GT1   <-------   cgctacaccatctagaagacccttaaccatggctgtcgggtaaatctctcttcgcatctctatattccttgcttgtttctccagtctctgtattggaatc  16548800                                                                                         ---------->DOF2                                                                                        <------ZmHOX2a(1)                                                                                       <------MYB83                                                                                       <------MYB46(1)                                       <---------TOE2(3)                             <--------P                                   <----------DOF2                         <---------GLK1(1)        --------->YAB1          <---------YAB1                             --------->GLK1(1)       <---------YAB1  --------->ARR11(3)                                <------ZmHOX2a(1)       ---- --GLK1(2)       --------->HSFB2a(2)   <---------TOE1(3)     <------ZmHOX2a(1) ---------->DOF2  <----   tctcatttgatcatagcttcgagtatatcatgttctgatttaaggtttttgtttgatcatataggaagaacaagaggatttcaaagggtaggaaaggagg  16548900                                                                                                   <-                                                                                                 <---                                                                                               ------                                                                                               ------                                                                                            <------MYB46(1)                  --------->TOE2(2)                                                         <------MYB83            --------->ANAC58                                                <---------WOX13(1) <-----        <---------ANAC58                       <---------YAB1             --------->ATHB12 <---------DEAR3(1)        <---------ANAC58        <---------AHL20(2)                       <---------YAB1    <---------AtMYB61        <---------ANAC46  ------>ZmHOX2a(1)--------->GLK1(1)           <---------ANAC58<---------TOE2(3) ------>DOF2--------->ANAC58   --------->AHL20(2)                      <---------ANAC58<---------YAB1 --ZmHOX2a(1)<---------MYB52(2)<---------AHL20(2)  --------->YAB1  <---------ZAT6   <---------YAB1 --   aaagaagaaggcgtaagtaacctatgtcctgaataaaattctcagatttctaattgtaatctgtatatagtgttcgtgattgaattgttatggatggtgc  16549000                                   --------->REM1(2)                                  ----------->HVH21                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                --------->ANAC55(2)                                <---------ANAC58                                <---------ANAC55(2)                                <---------ANAC46                                <---------ANAC55(1)                                --------->bZIP60(1)                                =============================bZIP_DOF                                <---------TGA1a                                --------->TGA1a                                --------->O2                                <---------O2                                <---------ANAC58                             ----------->HVH21      ------>ZmHOX2a(2)      ----------->TGA1      ======================HOX2a_HOX2a --------ZAT6            <------MYB46(1)                                                     <------- ------ANAC46            <------MYB83             <----------DOF2                        <------ZmHOX2a(1) --->ZAT14           <------ZmHOX2a(1)      ------>ZmHOX2a(1)                          --------->LBD16 --->ZAT18  <---------HSFB2a(2) <---------bZIP60(1)              <---------HSFB2a(1)  <---------HSFB2a(2) ----ZAT14  --------->HSFB2a(2) <---------bZIP60(2)  <-----------------AGL1           <---------LBD16 ------->ALFIN1      --------->ATHB12     ----------->RAV1(2) <------ZmHOX2a(1)       --------->HSFB2a(2)   agtgttgatcccttctccaagaaggattggtatgacgtgaaggctcctggttctttcacgaacaggaatgttgggaagactcttgtttccaggactcagg  16549100  Previous    Next  AGI:  At4g34660.1    Description:  SH3 domain-containing protein 2 (SH3P2). similar to SH3 domain-containing protein 3 (SH3P3) [Arabidopsis thaliana] (TAIR:AT4G18060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81938.1); contains InterPro domain Src homology-3 (InterPro:IPR001452) Range:  from: 16545202    to: 16548458    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34670.1    Description:  40S ribosomal protein S3A (RPS3aB). Identical to 40S ribosomal protein S3a-2 (RPS3AB) [Arabidopsis Thaliana] (GB:Q42262;GB:O82816;GB:Q42293); similar to 40S ribosomal protein S3A (RPS3aA) [Arabidopsis thaliana] (TAIR:AT3G04840.1); similar to 40S ribosomal protein S3a (S phase-specific protein BIS289) (GB:P49396); contains InterPro domain Ribosomal protein S3Ae; (InterPro:IPR001593) Range:  from: 16548623    to: 16550458    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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