Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        -------->P                                                                     ------->GAMYB                                                                    <---------MYB111(2)                                                                 --------->MYB46(3)                           <---------ANAC58                     ------>MYB83                           <---------ANAC58           <---------AHL20(2)   --------------->AGL15<----------DOF2              <---------AHL20(2)   <----------DOF2<---------ARR14(2)                 --------->AHL20(2)  ----------->GT1 ---------DOF2    --------->ARR14(2)             <---------TOE1(3)  <---------MYB55(2) ---->ARR11(3) <---------ANAC46                  <---------TOE2(3)  --------->MYB46(3) -----ARR11(3) <---------ANAC58         <---------ANAC58        ------>MYB46(1)                     - --TOE2(3)     <---------ANAC58         <---------ANAC58   <-----------GT1   --------->AHL20(2) ----- ->DOF2   --------->MYB52(2)      <----------DOF2<---------YAB1--------->ANAC46              --------   tctttctttgtttagttgcgtttcttctttcgttctcttttggcatgttttaagattaattttaccaacaacaaccagataaaatccaaatgcaataaga  16542000                                                 ----------->GT1                                                 <---------DEAR3(2)                                                <---------DEAR3(1)                                               <---------ORA47(1)  ----------->GT1                      <----------DOF2 ---------->DOF2                        <------ --------->DOF2                    <----------DOF2<------NtERF2                               ------- ----->DOF2               --------->GLK1(1)    --------->RAP2.6(3)                          --------- ->YAB1   --------->YAB1  <---------GLK1(1) --------->MYB59       ---------->DOF2         ------->TEIL   aagaaagaaaaatgacaatcgaagactgaaatctcttctttctttttaggtcggcaaaaaagtctcttcaaagtatataaaacaaaaacatgaatcaaga  16542100                                <-------PIF5                                ------->PIF5                                ------->MYC2                                <-------MYC3                                <-------MYC2 <---------AHL20(2)                                ------->MYC3 --------->AHL20(2)                                <---------LBD16                    <---------ANAC55(1)------------>CBF                 <---------MYB52(1)   --------->ANAC58                --------->TOE1(3)  <------NtERF2                --------->TOE2(3)--------->ANAC46              <---------TOE1(3)--------->ANAC58     <-----------GT1<---------ANAC46  --------->ANAC58 ---YAB1      <---------TOE2(3)--------->ANAC46                                        <---------At5g28300 -->ICU4     <-----------GT1   --------->ANAC58                                     ------->TEIL----- >YAB1  <----------DOF2 --------->ALFIN1    --------->AHL20(2)            ----------->GT1       -----   ttagatttatctttttaacgttaagtgtgtagcacgcggcaagcaatttaaatgcaaaaatagaacatagttggaccagtaacatgtatcaccgtggcaa  16542200                                                       <---------ANAC46                                                       <---------PCF2                                    --------->ANAC58<---------MYB52(1)                                    --------->ANAC58--------->ALFIN1                         <---------LBD16          <---------ANAC58                        <-----------RAV1(1)       <---------ANAC46   <---------YAB1                        <---------ANAC46          <---------ANAC58<---------AHL20(2)                     --------->GLK1(2)      ---------->DOF2       --------->AHL20(2)          -------                     --------->ARR14(2)  --------->ANAC58        <---------WOX13(1)          -------- ---->ANAC58         <---------ARR14(2)  --------->ANAC58      --------->ATHB12      <---------MYB46(3) ---->ANAC58        <---------GLK1(2)  --------->CCA1(2)    <------------CBF      --------->ARR14(2)   gcttaagagcaaggctaatagcgattctgtggaagtgcaaggtatgcaaaggccgtggggtctattgatttattaatagggccatatttgttgaattata  16542300                                                                                          <---------ANAC58                                                                                          <---------ANAC58                                                                         <---------HSFB2a(2)                                                                         --------->HSFB2a(2)        ------>MYB83                                                     <---------------AGL15        ------>MYB46(1)                                                 ----------------->AGL2     <---------ANAC58              <------------CBF                     <-----------------AG     <---------ANAC58           ------>ZmHOX2a(1)                       <-----------------AGL1 ------->MYC2                   >>>>>>>>>>>>>>>>>LFY                    <-----------------AGL3 ------->MYC3               <---------ARR14(2)                          <-----------------AGL2 <-------MYC2               --------->ARR14(2)                          ----------------->AGL3 <-------MYC3            --------->MYB46(3)                      ------>ZmHOX2a(1)    <---------ANAC58 --->DOF2              ----------->RAV1(1)                 <-----------GT1            <---------ANAC58 ->YAB1 -------->P   --------->LBD16                   <---------MYB52(1)--------------->AGL15   gcacatggcctaccattttgttccccaacaaatcctccattgtttcaaacgagttctgttttttctcctctgtttctaaaaatgggaagcttgagtacga  16542400                     --------->ARR14(2)                     <---------ARR14(2)                     <-----------GT1                    --------->At4g35610                    <---------CCA1(2)                   <---------At4g35610        <---------ALFIN1                   ----------->ARR10                 ---------->DOF2--------->ARR14(2)               ----------->GT1                     --------->ANAC58 <---------ARR14(2)          --------->LBD16                          --------->ANAC58 <---------GLK1(2)         --------->HSFB2a(2)                       <---------ANAC55(2)           ----------->RAV1(1)         <---------HSFB2a(2)                       <---------YAB1  --------->At4g35610     <---------        <---------LBD16                   --------->TOE1(2)  --------->At4g35610 <---------ALFIN1<---   ttttgagacatccggatgagttatatccgctcttgaagttgaaacttgcgattacgaaagctcagaagcagattccacttgagccacacttagctttctg  16542500                                                               <-------TEIL                <---------                                                            --------->ZAT2                 <---------                                                            <---------ZAT2<---------MYB52(1)<--------                       ---------->DOF2                   --------->DEAR3(1)<---------TOE2(2)---------                     <---------HSFB2a(2)                <------NtERF2    <---------SPL7    ---------- -DOF2       ---------->DOF2<----------DOF2            ------>NtERF2    <---------ANAC46   ---------- ------MYB52(1)      --------->HSFB2a(2)      --------->MYB46(3)   ---------->DOF2       <-----------GT1   ttattcaattcttcacaaagtttctaaaagcttttctcttgttattcaacaacttggcaccgagcttcgtaacgccgtatgtttttttttttttctatat  16542600                                                            <---------ANAC46                                                            <---------ANAC58                                                            --------->ALFIN1                                                            <---------ANAC58                                                        <---------ANAC58                            <                                                        <---------ANAC46                           --       <-----------GT1                                  <------MYB46(1)                            <- --------AGL3                                           <---------ANAC58                           <- --------AGL2                                           <---------ANAC55(1)                      <--- -------AGL15                                           <------MYB83                 <---------ARR11(3) ------>AGL15                                          --------->MYB111(1)           --------->ARR11(3) ------->AGL3                                     <---------YAB1                    <---------ZAT2 <- ------->AGL2       <---------At5g28300    <----------DOF2--------->ALFIN1 <---------GLK1(2)   <-----   atagctatgttacatttttagttacagcaatatttcaaacattttctttgtttttattaggtgtgtgtgttctacttgattctccgagctcttgatactg  16542700 <--------P                         <----------DOF2 -------GAMYB                      --------->TOE2(3) ------->MYB55(2)               <-----------GT1 -----MYB83                 --------->AHL20(2) -----MYB46(1)              --------->AHL20(1) ------MYB52(1)             <---------ARR11(3)                    <----------DOF2               ----- --------MYB46(3)          <---------CCA1(2)              --------->HSFB2a(2)          <---------YAB1 ------RAV1(1)        <-----------GT1  --------->ATHB12   <---------HSFB2a(2)<---------AHL20(2)------   ttggttagtgcttcataactatagtatccatatattacctttgatttgatgagtcttcttctccaagtcttttggttttttaattcttgatgatagaaaa  16542800                                                            <------ZmHOX2a(2)                                                           <---------ARR11(3)                                                           --------->ARR11(3)                                               <---------SPL7                            --------->DREB2C(2)                                               --------->ZAT18                    <----------DOF2                                   <------ZmHOX2a(1)  --------->ALFIN1     <---------YAB1--------->DEAR3(1)      --------->YAB1               ================================HOX2a_HOX2a   <---------ANAC58 ---->DAG2                   --------->ZAT14  <---------ANAC58      ----------------->AGL1<---------- ---->DOF2                   <---------ZAT14  <---------ANAC58---------->DOF2    <---------ANAC58   agttagtatcatcttctcatatttttgctactacagaggatgacacaagcgtaccagtggagatcaaagttccaattctgatagctttccaccgtcatat  16542900  Previous    Next  AGI:  At4g34640.1    Description:  SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase. Identical to Squalene synthetase (SQS1) [Arabidopsis Thaliana] (GB:P53799); similar to SQS2 (SQUALENE SYNTHASE 2), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34650.1); similar to squalene synthase [Glycine max] (GB:BAA22559.1); similar to squalene synthase [Panax notoginseng] (GB:ABA29019.1); similar to squalene synthase 1 [Glycyrrhiza uralensis] (GB:CAJ77652.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449); contains InterPro Range:  from: 16538287    to: 16541931    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g34650.1    Description:  SQS2 (SQUALENE SYNTHASE 2); farnesyl-diphosphate farnesyltransferase. similar to SQS1 (SQUALENE SYNTHASE 1), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34640.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47232.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449); contains InterPro domain Terpenoid synthase (InterPro:IPR008949) Range:  from: 16542382    to: 16545126    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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