Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                               ------                                                                                               ------                                                                                               ------                                                                                             <-------                                                                         <------ZmHOX2a(1)   <-------                                                                        --------->ICU4     <---------At4g35610                                                                   =================================MYC_MYB                                                                   --------->ANAC55(2)     --------->At4g35610                                             <-----------GT1       --------->ANAC55(1)   ---------->CDC5                                     --------->ARR14(1)            --------->ANAC58    --------->AtMYB61                    --------->MYB111(1)   ------->TEIL             <---------ANAC55(2)===============                    --------->MYB111(2)--------->ANAC55(2)         --------->TGA1a    --------->O2                    --------->MYB52(2) --------->ANAC55(1)         ==================================                    <---------MYB46(3) <---------ANAC55(2)         --------->bZIP60(2)<---------ZAT2                    --------->MYB46(2) <---------ANAC55(1)         <---------TGA1a    ==============MYC_MYB                   <--------P        --------->CCA1(2)             --------->ANAC46   --------->TGA1a               <---------WOX13(1)   --------->ARR14(2)             --------->ANAC58   --------->bZIP60(2)   --------->ARR11(3)  <-----------GT1<-------TEIL  ----------->GT1--------->O2      ------>NtERF2 --------ZAT6 <------------CBF      --------->ARR11(1)             <---------O2     <---------ALFIN1 >AtMYB61   <---------YAB1          <---------ARR14(2)     <-----------RAV1(1)   <-----------GT1-----   agtgttatcttgtgctaattggtagttacactgttgaagatacgtatttacaaccagttatatgttgccacgtaaggattattttgccacctcagcgtcg  16537900                                                           --------->YAB1                                                          <---------YAB1                                                        --------->YAB1                                                       <---------YAB1 ---------->DOF2                                     --------->YAB1 ---NtERF2                                   <---------ANAC46 --->ETT(2)                                  <---------ANAC58 --->RAP2.3(3)                 ----------->GT1<---------SPL7 --->DEAR3(1)     --------->AHL20(2)         <---------ANAC58 --------->YAB1    <----------DOF2 --ATERF1(1)     --------->AHL20(2)         <---------------AtSPL3             <---------DAG2 ----HVH21       <---------AHL20(2)         <---------------AtSPL8          <-----------GT1 <-------- ===========bZIP_DOF           --------->AtLEC2 <---------TOE1(2)          --------->ARR11(3) ===========bZIP_DOF      <---------ZAT18   --------------->AtSPL3         <---------ARR11(3)       - ->NtERF2  ----------->GT1--------->ZAT18   --------------->AtSPL8     ---------->DOF2      ---------   ccagaaagtttgccagtaaataaataagtggacatgtaaatttgatgtcgtacatttatgataataaaaactaaaaagataccttttcttccattttttt  16538000                <----------DOF2       <----------DOF2      <---------DAG2   <-----------GT1  --------->KAN4(2)                                                  <---------YAB1 <----------TaMYB80                                                --------->AHL20(2) <---------KAN4(1)                             --------------->AGL15<---------AHL20(1) --------->KAN4(1)                             <---------------AGL15--------->AHL20(1) -AHL20(2)   ---------->ID1                   <-----------------AGL2<---------AHL20(2) --------->TaMYB80     <---------ARR11(3)  <----------DOF2     <---------YAB1       <-----------GT1 >AHL20(2)  <-----------GT1          <---------ICU4  ----------->GT1--------->AHL20(2)          <----   agaatatacctttttttcctttcaacatctataatttgatcatttctttctaattttgttaatttctgattatattaaacacattttctctgttttctgt  16538100                                                                                     <---------ANAC58                                                                                     <---------ANAC46                                                                            <----------DOF2                                    ---------->DOF2                      --------->GLK1(2)                               ----------->GT1                        <---------ARR11(3)         ----                              ----------->GT1    ------->TEIL         --------->ARR11(3)     <-------  <---------AHL20(2)     --------->DAG2      <---------------AtSPL8  --------->YAB1  <---------ANAC58 -----MYB52(1)          ---------->DOF2      --------------->AtSPL8 <---------YAB1   <---------bZIP60(2)   ttttttaatctaattaacacataagaaaaagggagttaaaaagaataaatgtactctccatttccatttgatgatattctttaagtttcgtggctctttt  16538200                                                              <---------ANAC58                                       ------------------------>ANAC81     <------------CBF             ---------->DOF2             <---------ANAC58    --------->ATHB12           <---------AHL20(2)          <---------ARR14(2)   <---------YAB1              --------->AHL20(2)          --------->ARR14(2)                     ---   <---------AHL20(2)      --------->AHL20(2)    --------->YAB1                           ---------->DOF2 -------->CBF              <---------AHL20(2)<---------MYB52(2)                        *TSS --------- ---DOF2     ----------->HVH21<---------------AGL15   ----------->GT1<-------GAMYB    ---------->DOF2   tcaatttcattggctctgacattttgtttttaattaaaaaggaagaaacaaacaaaatgtgaatccttgtgagttggctcactggcaaaaaagaaagaaa  16538300                                                                          --------->ARR14(2)                                                                          <---------ARR14(2)                                                                         <---------ARR14(2)                                                                         --------->ARR14(2)                                                                    ------>NtERF2                                                                 --------->At4g35610             ----                                                             --------->ARR14(2)                ------                                                             --------->KAN4(2)                 <-----                                                             <---------ARR14(2)                <-----                                                            <---------KAN4(1)                  ------                                                            --------->GLK1(1)                  ------                                                            --------->KAN4(1)                 <------                                                            <----------TaMYB80          --------->ANAC46                                                            <---------GLK1(1)       <------ZmHOX2a(2)                                                           --------->ARR14(2)       =================                               --------->AHL20(1)          --------->ARR11(3)      --------->ARR14(2)            <----------DOF2    <---------AHL20(1)          <---------ARR14(2)      <---------ARR14(2)      <---------At4g35610      <---------AHL20(2)          <---------ARR11(3)   <------NtERF2<-------      --------->At4g35610      --------->AHL20(2)         =================================HOX2a_HOX2a ------>AHL20(2)              --------->AHL20(2)   --------->AHL20(2)   <------NtERF2 <---------ALFIN1 -->GT1     --------------------->WRI1--------->MYB46(3)  <------ZmHOX2a(1)   <---------ANAC46<------   aaaaattcagaagcctttgttttcatcgatgaataaattaacaaacaaaactaaaaaataggatattcgctggccgaatcgcgtcgatccacatcgcagg  16538400                                                       --------->HSFB2a(1)                                                      ------->TEIL                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                <---------WRKY45                                                <---------WRKY12                                                <---------WRKY38(1)       ------>ZmHOX2a(1)                       --------->DOF5.7(2) ----->ALFIN1                             =======================HOX2a_HOX2a --->At4g35610                            ------>ZmHOX2a(2) ----ZAT2                                <------ZmHOX2a(2)                                        <-- ----At4g35610                           ========================HOX2a_HOX2a                      <-- --->ZAT2                               <---------ARR11(3)                        <---------HSFB2a(2) --->TGA1a           --------->O2       <---------ARR14(2)                        --------->HSFB2a(2) ---TOE2(2)          <---------O2       --------->ARR14(2)                        --------->HSFC1(1) =============HOX2a_HOX2a               --------->ARR11(3)------>ZmHOX2a(1)       <---------HSFC1(1) ----RAV1(2)   <-----------GT1   ------->TEIL <-----------HVH21                  <---------LBD16 ---- ---TOE1(2)   <-----------GT1   <---------GLK1(2)<---------DOF5.7(2)    --------->YAB1           <---   tgagggttcctgcaatttatccctcgtggtctctgaatctcagatcgtcgtcaacgaatcctccattttctgaatcaaaattttctggaaacaatgggga  16538500                                                                                               <-----                                 --------->ARR14(2)                                          <-------                                 <---------ARR14(2)                                          --------                         ----------->HVH21                                            ----------->RAV1(2)                      --------->LBD16                                             =============HOX2a_HOX2a                  <---------ARR14(2)                                              ------>ZmHOX2a(2)                  --------->ARR14(2)                                             ==============HOX2a_HOX2a                 --------->GLK1(1)                                               <------ZmHOX2a(2)                 --------->CCA1(2)        ------>ZmHOX2a(1)                     <---------ARR14(2)          --------->At4g35610    <-----------GT1                                --------->ARR14(2)          <---------At4g35610   --------->GLK1(1)                              --------->At4g35610     --------->SPL7 <---------LBD16     ----------->RAV1(2)                    <---------GLK1(1) -------ANAC58   <---------GLK1(1)   <---------At4g35610              --------->LBD16 =============== -------ANAC58  --------->ARR11(3)   --------->At4g35610          --------->DAG2--------->ARR11(3) ----->ZAT2     <---------ARR11(3)  --------->ANAC46             ---------->DOF2<---------ARR11(3) ------ZAT2   ----------->ARR10 <---------GLK1(1)     --------->TOE1(2)  ---------->DOF2------>ZmHOX2a(1)   gcttggggacgatgctgagatatccggatgacatatatccgctcctgaagatgaaacgagcgattgagaaagcggagaagcagatccctcctgagccaca  16538600                                                                                     <---------SPL7                                                                               --------->SPL7                                                                               ---------->DOF2                                                                              <---------MYB52(1)                                                                              ----------->HVH21                                                                             --------->LBD16                                                                             <-----------HVH21                                                                            --------->ANAC55(2)                                                                        --------->GLK1(1)    --------->ARR14(2)                            <---------MYB52(1)    --------->At4g35610    <---------ARR14(2)                  <----------DOF2                 <---------GLK1(1)   <---------GLK1(1)                  <---------HSFC1(2)                <---------ZAT2    --------->ARR11(3)   --------->GLK1(1)                  --------->HSFC1(2)                <---------At4g35610 ----ALFIN1                      <---------HSFB2a(2)                    --------->ZAT2<---------MYB52(1) --ALFIN1                        --------->HSFB2a(2)                 --------->DEAR3(1)   <---------ARR11(3) --->RAV1(1)                     --------->HSFC1(1)               <---------ALFIN1   --------->At5g28300 ====RAV                         <---------HSFC1(1)      <---------At4g35610<---------ANAC55(2)   ctggggtttctgctattcgatgctccacaaggtttctcgaagcttttctctcgttattcagcaactcaacaccgagctccgtaacgccgtaagttcttct  16538700                                                                                       <------MYB46(1)                                                                               <---------DEAR3(1)                                                                              <------NtERF2                                                               --------->AHL20(2)  --------->ATHB12                                                        --------->ZAT6       <---------RAP2.3(1)                                                     ----------->HVH21       ------>NtERF2                                                   <---------At4g35610      <---------DEAR3(1)                                                   --------->At4g35610     --------->ATERF1(1)                                                  <---------ARR11(3)     <---------bZIP60(1)                                                  --------->ARR11(3)     ============================                                                 <---------GLK1(1)       <---------bZIP60(2)                                                 --------->RVE1(1)       --------->TGA1a                    <---------DOF5.7(2)          <---------RVE1(1)       --------->bZIP60(1)                   <---------WRKY12              --------->GLK1(1)       --------->O2  <------MYB83                   <---------WRKY38(1)          <---------ARR14(2)       <---------O2<---------WOX13(1)                   <---------WRKY45             <---------ARR11(3)       <---------TGA1a                <------MYB83                    --------->ARR11(3)      ----------->STF1                <------MYB46(1)                 --------->ARR14(2)<---------YAB1  --------->ICU4               <---------AtMYB61         --------->GLK1(1)--------->ANAC58 --------->DDF1            <-----------RAV1(1)<---------DAG2 --------->LBD16  <---------AHL20(2) <---------YAB1     ------>NtERF2--------->WRKY18(1)   <------ZmHOX2a(1) --------->ANAC58<-----------HVH21   cgctctcggcctctgtgttggtcaacgtcttcaatttttggaggaatccagatatctgacactcatttattgttgacgtcggcgatgattggtttcttct  16538800  Previous    Next  AGI:  At4g34640.1    Description:  SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase. Identical to Squalene synthetase (SQS1) [Arabidopsis Thaliana] (GB:P53799); similar to SQS2 (SQUALENE SYNTHASE 2), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34650.1); similar to squalene synthase [Glycine max] (GB:BAA22559.1); similar to squalene synthase [Panax notoginseng] (GB:ABA29019.1); similar to squalene synthase 1 [Glycyrrhiza uralensis] (GB:CAJ77652.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449); contains InterPro Range:  from: 16538287    to: 16541931    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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