Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->ANAC55(2)                         --------->ANAC58                         --------->ANAC58                         --------->ANAC46                                            ------>MYB46(1)                         <---------ANAC55(2)                                         ------>MYB83                         --------->ANAC55(1)                               ----------->RAV1(2)                        <-------TEIL                                       --------->At4g35610                        ------->TEIL                                       <---------At4g35610                        --------->SPL7                                     --------->ZAT2            --------->ZAT6        ----------->RAV1(1)                      <---------ZAT2    <-----------TGA1   <---------SPL1(1)                                --------->At4g35610   -------   <---------ETT(2)    --------->SPL1(1)<---------KAN4(2)       --------->YAB1     --------->AtMYB61  <------NtERF2       <---------SPL7 ------->GAMYB    <---------ALFIN1  --------->LBD16     <-------- <---------ATERF1(1)<---------------AtSPL3      --------->ARR14(2)      <---------At4g35610 <------ZmHOX2a(2) ------>NtERF2      --------------->AtSPL8      <---------GLK1(2)      --------->ANAC46    --------->ARR11(3) -------->DEAR3(1)  --------------->AtSPL3      <---------ARR14(2)    --------->MYB46(3)   <---------ARR11(3)   cgccgtcgtcattaacactatctccgtacgtaattccaacagaataaccagaacctccaccgagaaacatcatccgctgctgagaccatccaagatcatt  16537400                                                                    <---------ALFIN1                                                                    --------->DEAR3(1)                                                                <------ZmHOX2a(2)                                                                ==========================HOX2a_HOX2a                                                        <---------DEAR3(1)                                                        --------->ANAC46                                                       <---------LBD16      --------->At4g35610    <-                                                      <---------ALFIN1     --------->ANAC58        <-                                                   --------->AGP1   --------->AtMYB61             ---                              ------>NtERF2     --------->HSFB2a(2)--------->MYB46(3)             <--                       <---------ICU4         ------>MYB83     <---------ARR11(3)  <------ZmHOX2a(1)-                    --------->bZIP60(1)       ------>MYB46(1)  --------->ARR11(3)--------->YAB1   <--                    <---------bZIP60(1)  XXXXXXXXXXXXXXXXXXX>MIR172B*      --------->ANAC58       <--                 --------->ANAC58     --------->YAB1--------->CCA1(2)    <---------MYB52(1)       ---                 --------->ANAC58     <---------ICU4<------ZmHOX2a(2)   <-----------TGA1         <---                --------->SPL7----------->RAV1(1)  <---------ARR11(3)   <-----------HVH21       <---- -->KAN4(2) <---------HSFB2a(2)      <---------YAB1--------->ARR14(2)  --------->DREB2C(2)      <---- -YAB1      --------->HSFB2a(2)    --------->YAB1  <---------ARR14(2)  --------->DEAR3(1)      <-----   ctcatcaacttcatcgcgaacgacatcatcgccaacatcatcatcaccatccagatccacggcgagatcaccaccgtcagcaataggaattatctcatgc  16537500                                                   --------->TGA2(2)                                                  <-----------TGA1                                                 --------->TGA2(1)                                                 <---------O2                                                 --------->ANAC55(2)                                                 <---------TGA2(1)                                                 <---------ANAC55(2)       ----------->HVH21                         --------->O2 <------NtERF2                                   <<<<<<<<<<HY5 --------ANAC46                                  --------->bZIP60(1) --------DEAR3(1)                              <---------TGA2(2) --->NtERF2                   --------->HSFC1(2)<-----------STF1 -------LBD16                 <---------HSFC1(2)----------->STF1 -------->LBD16               --------->HSFB2a(1)>>>>>>>>>>HY5                                   ---- -------At4g35610             <---------HSFB2a(1)<---------bZIP60(1)                             ---- ----NtERF2            ---------->DOF2        ----------->HVH21                                  ---- ------>ATERF1(1)   ----------->RAV1(1)       ----------->TGA1                     --------->GLK1(2) ------RAP2.3(1)   ----------->HVH21        --------->CCA1(2)           <---------LBD16   <------NtERF2 -----RAP2.3(2)    <----------ID1          --------->ARR11(3)         <---------ETT(2)  <---------DEAR3(1) -----DEAR3(1)    --------->SPL7           <---------ARR11(3)         --------->ETT(2)<-----------HVH21 ----LBD16       --------->ALFIN1  <-----------HVH21         ---------->DOF2      <---------GLK1(2)   ggcggagaaatgacagagggtgcgacaaaggaagcgtcgtcaagagatatgacgtcatcgtcggaaagactatcgacggagaaagaatcgtcggagaact  16537600                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                   ================================HOX2a_HOX2a          --------->ANAC46         <------ZmHOX2a(1)         <------ZmHOX2a(2)                        --------->TOE1(3)         =================================HOX2a_HOX2a                      --------->ZAT6------>NtERF2         ===========================HOX2a_HOX2a             <------ZmHOX2a(1)--------------------->WRI1   --------->YAB1                 <---------ARR11(3)        ==============================HOX2a_HOX2a ----->ANAC58              --------->GLK1(1)     --------->HSFB2a(2) <---------YAB1    ------>NtERF2 ----->ANAC58           --------->LBD16         ------>ZmHOX2a(2)  ----------->GT1    <---------ATERF1(1) ----->ANAC46<-----------GT1 <------ZmHOX2a(2)  ===================HOX2a_HOX2a     ------>ZmHOX2a(2)   cgccatcagaaggattaacaacttcccagagatcgagatcaacttcttgatcgagaatgagaggagacatggtgataaccctagatcgctgcgccatttt  16537700                    <--------P                                                                     <-                 <---------TOE2(3) <-----------GT1                                          ---------        <-------GAMYB      <----------DOF2            --------->YAB1  <-----------GT1      --------->MYB46(3)     <---------ANAC58  <---------ANAC46              <---------YAB1 <---------HSFC1(2)     <---------MYB55(2)     <---------ANAC46  <---------ANAC58            *TSS             --------->HSFC1(2)   --------->ANAC58     <---------ANAC58  <---------ANAC58      <---------MYB52(1)  <------ZmHOX2a(1)       --------->ANAC58   cgaaattgtgtgttgtttagaggttgcttctttgatttttcaagactgtttgtttttgataaccagaggaagttaccctattaatagaggcaaaccaccg  16537800                                                                                                 <---                                                                                               ------                                                                                               ------                                                                                               ------                                                                                             <-------                                                                         <------ZmHOX2a(1)   <-------                                                                        --------->ICU4     --------->At4g35610                                                                   --------->ANAC58        <---------At4g35610                                                                   --------->ANAC55(1)   ---------->CDC5                                             <-----------GT1       <---------ANAC55(2) --------->AtMYB61                                     --------->ARR14(1)            --------->ANAC46   --------->TGA1a                    --------->MYB46(2)    ------->TEIL             --------->ANAC55(2)===============                    <---------MYB46(3) <---------ANAC55(1)         ==================================                    --------->MYB111(2)--------->ANAC55(2)         =================================MYC_MYB                    --------->MYB111(1)--------->ANAC55(1)         --------->bZIP60(2)==============MYC_MYB                    --------->MYB52(2) <---------ANAC55(2)         --------->TGA1a    <---------ZAT2                   <--------P        --------->CCA1(2)             <---------O2       --------->O2               <---------WOX13(1)   <---------ARR14(2)             --------->ANAC58   --------->bZIP60(2)   --------->ARR11(3)  <-----------GT1<-------TEIL  ----------->GT1--------->O2      ------>NtERF2 --------ZAT6 <------------CBF      --------->ARR14(2)             <---------TGA1a  <---------ALFIN1 >AtMYB61   <---------YAB1          --------->ARR11(1)     <-----------RAV1(1)   <-----------GT1-----   agtgttatcttgtgctaattggtagttacactgttgaagatacgtatttacaaccagttatatgttgccacgtaaggattattttgccacctcagcgtcg  16537900                                                           --------->YAB1                                                          <---------YAB1                                                        --------->YAB1                                                       <---------YAB1 ---------->DOF2                                     --------->YAB1 ---NtERF2                                   <---------ANAC58 --->DEAR3(1)                                <---------ANAC58 --->ETT(2)                    --------->AtLEC2 <---------TOE1(2) --->RAP2.3(3)    --------->AHL20(2)         <---------ANAC46                   <----------DOF2 ----HVH21       --------->AHL20(2)         --------------->AtSPL3             <---------DAG2 --ATERF1(1)     <---------AHL20(2)         <---------------AtSPL3         --------->ARR11(3) ===========bZIP_DOF           ----------->GT1<---------SPL7  --------->YAB1<-----------GT1 --------- ===========bZIP_DOF      --------->ZAT18   <---------------AtSPL8         <---------ARR11(3)       - ->NtERF2  ----------->GT1<---------ZAT18   --------------->AtSPL8     ---------->DOF2      <--------   ccagaaagtttgccagtaaataaataagtggacatgtaaatttgatgtcgtacatttatgataataaaaactaaaaagataccttttcttccattttttt  16538000                <----------DOF2       <----------DOF2      <---------DAG2   <-----------GT1  --------->KAN4(2)                                                  <---------YAB1 <---------KAN4(1)                                                 --------->AHL20(2) --------->KAN4(1)                             --------------->AGL15<---------AHL20(1) <----------TaMYB80                            <---------------AGL15<---------AHL20(2) >AHL20(2)   ---------->ID1                   <-----------------AGL2--------->AHL20(2) --------->TaMYB80     <---------ARR11(3)  <----------DOF2     <---------YAB1       <-----------GT1 -AHL20(2)  <-----------GT1          <---------ICU4  ----------->GT1--------->AHL20(1)          <----   agaatatacctttttttcctttcaacatctataatttgatcatttctttctaattttgttaatttctgattatattaaacacattttctctgttttctgt  16538100                                                                                     <---------bZIP60(2)                                                                                     <---------ANAC58                                                                            <----------DOF2                                    ---------->DOF2                      --------->GLK1(2)                               ----------->GT1                        <---------ARR11(3)         ----                              ----------->GT1    ------->TEIL         --------->ARR11(3)     <-------  <---------AHL20(2)     --------->DAG2      --------------->AtSPL8  --------->YAB1  <---------ANAC46 -----MYB52(1)          ---------->DOF2      <---------------AtSPL8 <---------YAB1   <---------ANAC58   ttttttaatctaattaacacataagaaaaagggagttaaaaagaataaatgtactctccatttccatttgatgatattctttaagtttcgtggctctttt  16538200                                                              <---------ANAC58                                       ------------------------>ANAC81     <------------CBF             ---------->DOF2             <---------ANAC58    --------->ATHB12           <---------AHL20(2)          <---------ARR14(2)   <---------YAB1              --------->AHL20(2)          --------->ARR14(2)                     ---   <---------AHL20(2)      <---------AHL20(2)    --------->YAB1                           ---------->DOF2 -------->CBF              --------->AHL20(2)<---------MYB52(2)                        *TSS --------- ---DOF2     ----------->HVH21<---------------AGL15   ----------->GT1<-------GAMYB    ---------->DOF2   tcaatttcattggctctgacattttgtttttaattaaaaaggaagaaacaaacaaaatgtgaatccttgtgagttggctcactggcaaaaaagaaagaaa  16538300  Previous    Next  AGI:  At4g34630.1    Description:  similar to CM0216.450.nc [Lotus japonicus] (GB:BAF98581.1) Range:  from: 16536870    to: 16537751    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34640.1    Description:  SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase. Identical to Squalene synthetase (SQS1) [Arabidopsis Thaliana] (GB:P53799); similar to SQS2 (SQUALENE SYNTHASE 2), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34650.1); similar to squalene synthase [Glycine max] (GB:BAA22559.1); similar to squalene synthase [Panax notoginseng] (GB:ABA29019.1); similar to squalene synthase 1 [Glycyrrhiza uralensis] (GB:CAJ77652.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449); contains InterPro Range:  from: 16538287    to: 16541931    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version