Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------At4g35610                                                                         --------->At4g35610                                                                         ------>NtERF2                                                                        --------->RAP2.3(2)                                  <------ZmHOX2a(2)                     --------->DEAR3(1)                                 --------->ARR14(2)                    --------->ORA47(2)                                 <---------ARR14(2)                    --------->DEAR4(2)                                 --------->AGP1 --------->ZAT2         --------->RAP2.3(1)                                 <---------ARR11(3)                    <------NtERF2    --------->ALFIN1      ------->GAMYB         --------->At4g35610   <---------RRTF1(1)  --------->ALFIN1       --------->MYB46(3)     <---------At4g35610   <---------RAP2.3(1) <---------MYB52(1)      <---------MYB52(2)  --------->LBD16      ------>ZmHOX2a(1) -------->LBD16    --------->ANAC58<-------TEIL<-----------ARR10 <---------ANAC58      <---------ALFIN1 -------LBD16      --------->ANAC58------>ZmHOX2a(2)             <---------ANAC58   --------->ANAC46 -----DOF2        --------->SPL7 <---------GLK1(2)          --------->SPL7          --------->ANAC58 ---DAG2      <---------------AtSPL8    <xxxxxxxxxxxxxxxxsmallRNA(i)  ------>NtERF2 --------->ANAC58 --GT1        <---------------AtSPL3  <---------MYB52(1)--------->LBD16--------->ATERF1(1)   tccggtgtgtccctgaagagtacgacaacaaaccagatccgttgctccgaagctcacccgagtacgtccttgcgccgctgaatacctcgccactggcaaa  16479100                                                                                      <------NtERF2                                                                                    <---------ANAC58                                                                                    <---------ANAC58                                                                                   <------NtERF2                                                                            --------->At4g35610                                                   --------->ARR14(2)       <---------At4g35610                                              --------->DAG2                <---------ZAT2                  ------------------------>ANAC81  <---------ARR14(2)       --------->ZAT2                  >>>>>>>>>TBF1              ---------->DOF2               <---------ARR14(2)            <---------TOE2(3)             --------->ANAC58    --------->MYB52(1)   --------->ATERF1(1)           ---------->DOF2                --------->ANAC58  --------->MYB46(3)--------->ALFIN1   <---          <---------AHL20(2)            --------->CCA1(2)  >>>>>>>>>>MYB80 --------->ARR14(2)    ----          --------->AHL20(2)           <----------ID1     --------->ANAC46<------ZmHOX2a(1)      <---   attcaatccaaattaaagaagaagaagatgagagaagaagagagacgaaaaggaatccacaaaccatcggtatcgaggagctggaggcgtctctgtctaa  16479200                                              <----------DOF2                                         <---------ANAC46                                        <------NtERF2                                      --------->ALFIN1                                      <------NtERF2                                      <---------DEAR3(1)                                    <---------O2                                    <---------ANAC58                                    --------->ALFIN1                                    <---------ANAC58                                    <---------ANAC46                 <---------At5g28300<---------bZIP60(2)                   <------ZmHOX2a(2)         <         <---------MYB46(3)        <------NtERF2                          <---------At4g35610    ----         ----------->GT1         <---------DEAR3(1)                       --------->At4g35610   <----        <---------TOE2(2)     ----------->HVH21                      <---------ANAC55(2)       ------    <---------LBD16       --------->LBD16<---------ANAC58            <---------ANAC46         <------  ----------->HVH21      --------->ANAC46<---------ANAC58            <---------LBD16          ------- <-----------HVH21 ------->GAMYB --------->DEAR3(1)                  --------->ANAC55(2)     -------- ------ZAT2     <-----------GT1 --------->ATERF1(1)<---------ZAT2   <---------LBD16         <-------- ----->ZAT2   <---------YAB1 --------->DEAR3(2)    <---------At4g35610--------->LBD16       <-------- ------At4g35610--------->MYB52(1)------>NtERF2    --------->ZAT2 --------->GLK1(2)        --------->ANAC46   gctggtcacggaggttattaacggtctccgtagcgacggcgtggcgttctttgagctcggagacagacattccgggatcagacttaggcttctccgtcgc  16479300                                                                                                    <                                                                                                    <       ---------->DOF2                                                                              < ------ZmHOX2a(2)                                   <---------WOX13(1)                              < ----->DEAR3(1)                                   <---------ICU4                                    - --NtERF2                     <---------HSFC1(1)  --------->ATHB12                                  < >NtERF2                      <---------HSFB2a(2)--------->ICU4                                     < ---DEAR3(1)              <---------ANAC46    <-------TEIL                                <---------LBD16 -->DEAR3(1)         <-----------RAV1(1)   <---------HSFB2a(1)                           --------->ALFIN1 ->ATERF1(1)       <----------DOF2         --------->HSFC1(2)                ---------->DOF2        < -ATERF1(1)  ----------->GT1  --------->HSFB2a(2)<---------YAB1   <------ZmHOX2a(2)   --------->ARR14(2) ---HVH21--------->DAG2   <---------PCF2   <---------HSFC1(2)   --------->GLK1(1)     <---------ARR14(2)   cgatcaaataaaagggggaaactttgtggggtctagaagagaagaaggttcatgattgagagagggagatcgaaccctagaaagaatggatttgggggaa  16479400       ---------->DOF2 --------->TOE1(2) ---------ANAC58                                            --------->ANAC46 ---------ANAC46                                            --------->ANAC58                  ------- ---------ANAC55(1)                                         --------->ANAC58             ============ ---------ANAC55(2)                              --------->ANAC58                        <----------DOF2 -------->ANAC55(2)                              --------->ANAC58                       <---------ANAC58 ---------ANAC58         ---------->DOF2      --------->WRKY18(1)                       <---------ANAC58 ---------bZIP60(2)  --------->AHL20(2)     --------->WOX13(1)                     <---------ICU4<--- ---------O2      ----------->GT1        --------->GLK1(2)  --------->ANAC55(1)   <---------YAB1 ----   ttacgtgggaaaagagagagagattaaaaaagcttgagagaagaatcagtcaagacacaaacacggctctcttgttgaatgttgatgatggcttctctga  16479500                                                                        <--------ATHB1                                                                        <------------ATHB5                                                                       <---------YAB1                                                                       --------->ICU4                                                           <---------ARR14(2)                                                           --------->TCP16(1)                                                           --------->PCF2                                                           --------->ARR14(2)                       <       --------->STY1(2)                                 --------->ZAT18--------->YAB1              >       <---------STY1(2)                                --------->ALFIN1<---------ICU4              > ---->HVH21                            <---------WRKY18(1) --------->PCF5    <-----------GT1       -- ======bZIP_DOF                       --------->WRKY38(1)<---------ZAT18--------->ATHB12           -- ------TGA1a                    *TSS<------------CBF---------->DOF2------------>CBF               <-- ------->RAV1(2)         ----------->GT1       <---------------AGL15   <---------ATHB12           ---   cctgagactagctagagagagagaagagggtcaatagacattgactgttcccattaaagtggaccctctcacaatgattaaacgatatcgtttaagagct  16479600                                    --------->AHL20(1)                                    <---------AHL20(2)                                     --------->ZAT6 <---------WOX13(1)                 --------->AHL20(2)                                    <---------At5g28300 ------------CBF                    <---------AHL20(1)                            <---------ANAC55(2) >>>>>>>>ARR2                  ------------>CBF                                   --------->ANAC58--- >>>>>>>>ARR1            <-----------GT1            <---------ARR11(3)            --------->ANAC55(1) ------->YAB1         <---------ARR11(3)            --------->ARR11(3)            ----------->GT1 --- ------->ATHB12       --------->ARR11(3)           <------ZmHOX2a(1)              --------->ANAC58--- -------YAB1          <---------GLK1(2)    ------->TEIL                <----------DOF2   <-----------GT1 ------>ICU4        ----------->ARR10<---------AHL20(2)   <-----------GT1         --------->ANAC55(2)   atgattgtttttggttttggacgagattttcgattcaatataatgaatttgaaggatttttaactacatatttctttttaagaaacgtaatttacagtac  16479700                                                                                                  <--                                      --------->AHL20(2)                                          ---                                      <---------AHL20(2)                                         <---                                     <---------AHL20(2)                                          ----                              <---------O2                                                       <---   ----------->GT1            --------->ANAC55(2)                                                ---- ---------->DOF2              <---------ANAC46                                                  <---- ------>ANAC46                --------->O2            --------->GLK1(2)                  --------->YAB1 ------>ANAC58                <---------ANAC55(2)    <---------GLK1(2)             --------->TOE2(3) ------>ANAC58   --------->MYB52(2)  --------->AHL20(2)        <-----------------AGL1   <---------ATHB12   aagaaaagagaaaacatgttagttattttgctacgtgaatttaatttgtctaatagattctgtttttctgaattggctacaagaacatcaataatccaat  16479800      >>>>>>>>>ARR2      <---------GLK1(2)      >>>>>>>>>ARR1    <---------TOE2(3)    <---------YAB1 -------AHL20(2) ------>AHL20(2) ------AHL20(2)                         <---------MYB46(3)          <---------GLK1(2) ----->YAB1                 --------->AHL20(2)                  ---------->DOF2                    <- ------AHL20(1)         --------->AHL20(2)                  ----------->RAV1(1)                    -- ----->AHL20(2)         --------->AHL20(1)              <---------ARR11(3)                        --- -----ATHB12            <---------AHL20(2)     --------->YAB1 --------->MYB46(3)         <---------ATHB12   aaaattaagattgtctcaagagaaaataaaataaaaacacattggttaagcatatcaatatccaacaaaagattatctcaagagaatacaaatcaaaaaa  16479900                                     --------->ATHB51                                     --------->ATHB12                         ----------->GT1                                    <---------YAB1                            <----------ID1    -----                                   --------->TOE2(3)                        ------------------------>ANAC81         --------->DAG2       --------->At4g35610                          ---------->DOF2   --------        ---------->DOF2  <---------ICU4                               --------->ZAT6     ---------->DOF2 --------AHL20(2)        --------->YAB1                              --------->ZAT18 <----------ID1 ------->AHL20(2)       --------->ICU4                              ------------------------>ANAC81 ------>AHL20(2)        <---------YAB1                          ---------->DOF2    ---------->DOF2  <   aaaaattttaaaaagtagacgaagtgatcatcatctacattattgatcaagaagttgcaaaaaaaaaaaagaacactaaaaggaaaaaagaaaaagaaag  16480000  Previous    Next  AGI:  At4g34460.1    Description:  AGB1 (GTP BINDING PROTEIN BETA 1); nucleotide binding. Identical to Guanine nucleotide-binding protein subunit beta (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to Guanine nucleotide-binding protein subunit beta-2 (GB:P93398); contains InterPro domain Guanine nucleotide-binding protein, beta subunit (InterPro:IPR016346); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit (InterPro:IPR001632); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repea Range:  from: 16477110    to: 16479532    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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