Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              <---------YAB1                                                                          <---------ICU4                                                                          --------->YAB1                                                                         --------->ICU4                                                                   <---------MYB46(3)                                                                   ----------->GT1                                                                <-----------RAV1(1)                                                             --------->GLK1(2)     <---------YAB1                                         <---------GLK1(2)--------->YAB1 ---------TOE2(3)                                           <---------ARR14(2)          <---------At4g35610 ---DOF2<---------WOX13(1)                        ---------->DOF2<-------GAMYB     --------->TOE2(3) ------->AGL15                         --------->YAB1       --------->ARR14(2)     --------->TOE1(3)   ttaagttttgatttacagaaatttttggagaaatttgagaatgatgttgaagaaaagaagtggattctgttgttaattatcatagccttaagctgttgta  16471400                                                       --------------------->WRI1                                               <-------TEIL                                              --------->CCA1(2)                                              <------ZmHOX2a(2)                                             --------->ARR14(2)        <---------------------WRI1                    <---------DAG2           --------->ARR11(3)        --------->At5g28300          -                    <----------DOF2          <---------ARR14(2)      <---------DEAR3(1)           ---                   <---------ANAC58          --------->AGP1       <---------ETT(2)               <---         ------->TEIL       ----------->GT1  <---------ARR11(3)   --------->ETT(2)            <------  <-----------GT1  <---------ANAC58      ---------->DOF2   xxxxxxxxxxxxxxxx>smallRNA(s)       -------   tatttaacatgagcctcgattgctttttatcggtgaaaaaacaaaaagatccatgttctatgagactatcgacggtgattctttcaccgaaatcggtgct  16471500                                                       --------->ARR11(3)                                                       --------->AHL20(1)                                                       <---------AHL20(2)                                                       <---------AHL20(1)                                                    <---------AHL20(2)                                            --------->ANAC55(2)                                            --------->ANAC58                                            --------->ANAC55(1)                                            --------->ANAC58                              --------->ZAT14       --------->AHL20(2)                            --------------->AtSPL8--------->AHL20(2)                            <---------------AtSPL8<---------AHL20(2)        <xxxxxxxxxxxxxxxxsmallRNA(s)        <<<<<<<<<<AtMYC2   <------NtERF2        <----------DOF2     ----------->GT1 <---------DEAR3(1)<---------MYB52(1)       <---------ANAC55(2) -------->SPL7   <---------MYB46(3)    ----------->HVH21             <---------ANAC46 -------->HVH21  <------MYB46(1)     ----------->RAV1(2)         ------->MYC3 --------RAV1(2) <---------DEAR3(2)  <---------At4g35610         <-------MYC3 ---ZAT14        <------MYB83 <---------ZAT18  ------->TEIL<---------ETT(2) -->ZAT14       <---------DEAR3(1)   --------->At4g35610   --------->ETT(2)                      <<<<   cagacggcgaaaatgaagtcggttcgctttagagtactcatctgacacgtatattaatatatcgacatgtggtttgggatagagtcaaactatagtttct  16471600                                                                                  --------->ATHB12                             <------MYB83                                        <---------YAB1                             <------MYB46(1)                                 --------->ARR11(3)                            --------->MYB59                    <----------DOF2 --------->YAB1                 <-------GAMYB    ------>ZmHOX2a(1)       <----------DOF2    <---------ARR11(3)                <-----------RAV1(1)                    ------>NtERF2    --------->WRKY38(1)      ---------->DOF2    <---------ARR14(2)           --------->LBD16   --------->WRKY45    <---------YAB1<---------MYB52(1)                  <---------ZAT18 <----------DOF2   <-----------GT1 <<<<<TBF1  xxxxxxxxxxxxxxxx>smallRNA(s)            <---------LBD16<---------TOE1(3)<---------WOX13(1)   tcttctatgaaagactctctgttggcctatttggtcctaaatcgtttctgtaatcgcggacttttctttaagctttgactatcttgattaatacaatatt  16471700                                                                                     <----------DOF2                                                                                 --------->ZAT14                                                                                 --------->ZAT18                                                                                 <---------ZAT14                                                                                 <---------ZAT18                                                                          <---------HSFB2a(2)                                                                          --------->HSFB2a(2)                                                                     --------->At4g35610                                       <---------AHL20(1)            <------NtERF2   <---------DAG2                      --------->YAB1--------->YAB1           <------------CBF--------->DAG2                      --------->TOE2(3)--------->AHL20(1)   <----------DOF2 ---------->DOF2                --------->YAB1   --------->TOE2(3) <---------ANAC58  <---------At4g35610              --------->AHL20(2) <----------DOF2   <---------ANAC58<---------RAP2.6(2)            ---   tctcttgggacaaaaaaaaaataatcttagtatttctttaatattttttgtttgggtatgggctattgggccgcttcgaaaagttcactttctctatcga  16471800                                                                         ------>ZmHOX2a(1)                                                           =====================HOX2a_HOX2a                                                           ------>ZmHOX2a(2)                                                          ======================HOX2a_HOX2a                                                          <------ZmHOX2a(2)                                                         --------->ARR14(2)                                                         <---------ARR14(3)              ---------->DOF2                                                         --------->ARR11(3)             --------->CCA1(2)                                                         --------->ARR14(3)     <---------At4g35610                                                         <---------ARR11(3)     --------->At4g35610        --------->GLK1(2)                                --------->AGP1----------->RAV1(2)--------->DAG2       <---------GLK1(2)                                 <---------ARR14(2)    ------->TEIL<---------TOE2(3) ----------->HVH21  ----------->HVH21                   <---------GLK1(1)<-----------RAV1(1)        - --->ZmHOX2a(2) <---------ZAT14        *TSS      --------->ATHB12 <----------DOF2      --------->ARR11(3)   tctctcacagtttctgagttctctgactcaaaaacatatagtagaagaaaacgattagagatcttcttctttctcctgttgcatctgaagataaaggaaa  16471900                       ----------->GT1                    <---------ANAC46                  --------->MYB52(1)            ------>ZmHOX2a(2)           <------ZmHOX2a(2)           --------->CCA1(2)                                    -------->P          <---------ARR14(2)                                   <---------ALFIN1          <---------ARR11(3)                                   --------->DEAR3(1)          --------->ARR14(2)                      <------ZmHOX2a(2)          --------->AGP1                      --------->HSFB2a(2)          <---------AGP1                      <---------HSFB2a(2)<---------ALFIN1      --------->ARR11(3)          --------->ARR11(3)    ---------->DOF2  <---------ARR11(3)   --------->O2    --------->YAB1 --------->DAG2  ----------->TGA1      <------MYB46(1)        --------->ATERF1(1)    <---------YAB1<- --------->DOF2  ----------->HVH21     <------MYB83           <------NtERF2  ---------->DOF2     <---   cagaaagcgcgagatctgagtgacggagtaatttcaaagggaggttttcgagatcagaaatggcgcaacccctcgtgaagaaagacgatgatcacgacga  16472000                                                                                     --------->ARR11(3)                                                                                     <---------AGP1                                                                                     <---------ARR14(2)                                                                                     --------->ARR14(2)                                                                            <---------TOE1(3)  ------                                                                      <---------ARR11(3)     <-------                                          --------->ZAT2           <---------HSFB2a(2) ------>ZmHOX2a(2)                                          <---------ZAT2           <-----------RAV1(2)<------ZmHOX2a(2)                                          --------->At4g35610    <------ZmHOX2a(2)   --------->AGP1                                        <-----------RAV1(2)     --------->AGP1       <---------ARR11(3)    ------->TEIL                 <-----------GT1                <---------ARR14(2)<---------HSFB2a(2) --------ANAC46             <---------YAB1<---------At4g35610   --------->ARR14(2)--------->HSFC1(1) ------YAB1              ------>ZmHOX2a(1)----------->RAV1(2)   --------->ARR11(3)--------->HSFB2a(2)   tgagtgtatgtgttctctcttaatctccttataattttcgaatcagctggttttctgcaaaatgtagatccagatgttaagcttctagatctgttatcat  16472100                              <------ZmHOX2a(2)                              --------->CCA1(2)                             --------->ARR11(3)                             --------->ARR14(2)                             <---------ARR11(3)                             <---------AGP1                             <---------ARR14(2)                    <-------GAMYB                                                        ------------                    <---------ANAC58                                                     <----------DOF2                    <---------ANAC58                                                    <---------ANAC58                   <------MYB83------>ZmHOX2a(2)                               <---------ANAC46        --------->ATHB12     --------->AGP1                                    --------->ALFIN1       <---------YAB1       <---------CCA1(2)                                --------->LBD16  ------->GAMYB   <---------AtMYB61                                        <---------LBD16        <-- --------->MYB46(3)<------MYB46(1)                                       <------ZmHOX2a(2)   <------- --->WOX13(1)<---------YAB1----------->ARR10                  <---------At5g28300       <---------ANAC58 --YAB1--------->ICU4   <---------ANAC46                     <-----------GT1--------->LBD16  <-------   tcaacagtcgtgattgtgatttggttgtgtagatctacaatctcaagtccgatttagttttgtttaccgcattcgatcccggtgtgaattgctttgctta  16472200                                      --------------->AGL15                                      <---------------AGL15                                --------->ARR14(2)                                <---------ARR14(2)                             <---------ANAC46       <---------YAB1      <---------ZAT14   <---------GLK1(1)       <---------ZAT18 --------->WRI1            --------->ZAT14--------->ATHB12       <---------ARR14(2) ---------GT1          --------->ATHB12   --------->YAB1         --------->ARR14(2)              <--- --ANAC58             <------ZmHOX2a(2)  <---------ATHB12      <---------MYB46(3)       --------->YAB1 --ANAC58      <-----------RAV1(1) <-----------GT1     ---------->DOF2               <----------DOF2   tttcgatttctgattttttgttggatcagtggagtattctccattcatgggaattgagaaaggagcggttcttcaagaggctagagtctttaatgaccct  16472300  Previous    Next  AGI:  At4g34450.1    Description:  coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative. Identical to Coatomer subunit gamma [Arabidopsis Thaliana] (GB:Q0WW26;GB:O65673;GB:Q56X38); similar to protein binding / protein transporter/ structural molecule [Arabidopsis thaliana] (TAIR:AT2G16200.1); similar to hypothetical protein OsI_024369 [Oryza sativa (indica cultivar-group)] (GB:EAZ03137.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47640.1); similar to Coatomer subunit gamma-1 (Gamma-1-coat protein) (Gamma-1-COP) (GB:Q8H852); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain Clat Range:  from: 16471839    to: 16477025    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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