Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         --------->YAB1        <-------                                                                <---------ARR14(2)           <-------                                                                <-----------HVH21            <-------                                                             <---------ANAC58         <---------ANAC58                                                             --------->ANAC55(2)      <---------ANAC58                              <---------MYB46(3)             <---------ANAC55(1)     <-------TEIL -------->ALFIN1     <----------DOF2                         <---------ANAC55(2) --------->MYB59 ----->DAG2       <-----------GT1                            <---------ANAC46    <---------TOE1(3) ---->DOF2     <---------AHL20(2)       --------->ANAC46     <---------ANAC58    <---------TOE2(3) >LBD16<---------ARR11(3)<---------TOE2(3)         <-------TEIL --------->ARR14(2)  --------->ARR11(3)   aggtgggaatgtcttatttttttctttatggattgttgttatacacaaacgcgtacatgtaatgcgtgtccgataataagttttaggttcttgtttcttg  16465400        <---------ANAC58        <---------ANAC46        <---------ANAC58    --------->ARR14(1)                                                              ------>MYB46(1)    --------->CCA1(2)                                                              --------->MYB52(1)   --------->ARR11(1)                                                             --------->TOE2(2)   <---------GLK1(2)                                                           <-----------GT1   <---------ARR11(3)                                                       --------->ANAC55(2)   --------->ARR14(2)                             <---------ATHB12          <---------ANAC55(2)   <---------ARR14(2)                        --------->TOE2(3)           ------>ZmHOX2a(1)   --------->ARR11(3)       --------->At5g28300 --------->WOX13(1)    ---------->ID1------>MYB83 ----------->ARR10         ------->GAMYB     ------->GAMYB         <---------DAG2--------->MYB46(3) --ANAC58                  ----------->GT1 -------->P              <----------DOF2------->GAMYB   <-- --ANAC58     ----------->HVH21            ------>MYB83        ----------->HVH21 <---------MYB55(2) --ANAC46    <-----------HVH21             ------>MYB46(1)    --------->At5g28300<---------MYB52(2)   gacaagatttgcttgtgtcacagttgcaacggtatatcaaactccaaccccaatcacttctggctgtgacttttccttatgtaaccaacgttatgagcca  16465500                                          <---------MYB52(1)                                         --------->LBD16                                         <---                                        --------->ANAC58                                         <---                                        --------->ANAC46                                        -----                                        --------->ANAC58                                        -----                                       <---------LBD16            <------MYB46(1)               -----                                      <<<<<<<<<<E2Fa              <------MYB83                  -----                                      <<<<<<<<<<E2Fe            =====================================                              ------>ZmHOX2a(1)                 <--------P                      <----                <---------ANAC58      <<<<<<<<<<E2Fc          --------->ATHB12                  -----                <---------ANAC58      <<<<<<<<<<E2Fd          <---------MYB46(3)                -----             ===========================RAV                  <---------YAB1         <---------ARR14(2)             <-----------RAV1(1)  <----------DOF2          --------->YAB1           --------->ARR14(2)    <----------DOF2         ----------->RAV1(2)           <---------YAB1        <-----------------AGL1 -------ATHB12  <---------ANAC46 <---------DAG2    ----------->RAV1(1)    <-----------GT1       =====   aacattctttctcttatgtcgtttgattactcctgccttttcccgctacttagccacagtatcatggttggattattttctaaaccgatatggtcccaac  16465600 --------TGA1             --------->DAG2 --------HVH21           ---------->DOF2 ---->TGA1a           <-------TEIL ---->ANAC58       --------->At4g35610 ---->O2    --------->ANAC58 ---->bZIP60(2)    <---------At4g35610 =====MYC_MYB    <-----------RAV1(2) -----O2  --------->MYB52(1)                                     <---------ANAC58 ---->ANAC46--------->ANAC58         --------->ANAC58            <---------ANAC46 ---->ANAC58--------->ANAC46         --------->ANAC58            <---------ANAC58 ===================================bZIP_DOF               <---------TOE2(3)            <---------YAB1   gtcacaaacttcaaacggcacagatgcaaaagtagtagtaagccaaattagagagactactacggtttcttgagagagcaaatatagatgataaatggta  16465700                      -------->HAHB4                      <---------ICU4                      --------->YAB1                   <---------ICU4                  --------------->AGL15                  ------>ZmHOX2a(1)                  --------->ICU4                  <---------------AGL15                 ----------------->AGL3                               <----------DOF2                 <---------MYB59                                 ------>ZmHOX2a(1)               ----               ---------->ID1                             --------->GLK1(1)                      ----           <----------DOF2                           --------->At4g35610       <------ZmHOX2a(1) ----        --------->ANAC58                             <---------At4g35610  --------->TOE2(3)    <-----        --------->ANAC58          ---------->DOF2<-----------HVH21  ------>ZmHOX2a(1)         <------    --------->CCA1(2)<---------YAB1     <-----------GT1   <---------GLK1(1)------>ZmHOX2a(1)<--------   gagaagagacacgctttgtcctaattatagctaaatgaaagtttacatttttgtcagaagaaatctcctcctctttccttaggaagaagctatttctcca  16465800      <-----------GT1 ----->ANAC58                                                                             <---------ANAC58 ----->ANAC58                                                                    <---------GLK1(1) ----->ANAC46                                                               <---------LBD16 ----ALFIN1                      <----------DOF2              --------->WOX13(1) --------->GLK1(1) ---REM1(2)   <-----------GT1   *TSS              <-----------RAV1(2)     --------->GLK1(2) ---GT1------------>CBF<----------DOF2       <---------------AGL15       <---------GLK1(2)<---------ANAC58   cgctgtttctacaatttctctctccctttcattttctttctaatcttcttcatcaggtactcatcaatctctccaaattctgggtttccattgcatacga  16465900                                               <---------ANAC46                                            <---------ANAC58                                            <---------ANAC58                                            <---------ANAC46                                         <---------MYB52(1)                                        <-------GAMYB                                        <---------ZAT2                                       <---------MYB46(3)                                   --------->ANAC46       <---------LBD16                        <---------ANAC58--------->At4g35610                        <---------ANAC58--------->ZAT2    --------->LBD16                      <-----           --------->ANAC58        --------->ANAC58      <---------LBD16                 --------->TOE2(3)           --------->ANAC58   <----------ARF1  <---------O2       --------->HSFB2a(1)    --------->TOE1(3)      <XXXXXXXXXXXXXXXXXXXXMIR1888 --------->ANAC58  <------ZmHOX2a(2)         <---------MYB52(1) <---------ANAC58       <---------ANAC46<---------At4g35610       <---------HSFB2a(1) --------->GLK1(1) <---------ANAC58     <---------YAB1------------>AtMYB77<---------LBD16   <---------ALFIN1     ------   tttgcttcttcacaagtattggttttgcttgggaaacaaggcagttgcgtcgtggatcaccggggagaaggtttctccaccgtttgagaaaccctaataa  16466000                           >>>>>>>>>GATA-4                         <---------MYB46(3)                              --------->ANAC58                 ----------->HVH21               --------->TOE1(3)       --------->ANAC58              <------NtERF2>>>>>>>>>GATA-2       --------->TOE2(3)       --------->ANAC46              ------>NtERF2>>>>>>>>>GATA-1 ----------->HVH21       <-----------HVH21             <---------ZAT18       ----------->RAV1(2)            --------->DEAR3(1)             <---------SPL7>>>>>>>>>GATA-3 --------->LBD16        --------->DREB2C(2)            <---------ANAC58       --------->At4g35610         --------->AtMYB61            <---------ANAC58    <---------At4g35610            <---------ALFIN1                     <       <---------ICU4  <---------MYB52(1)----------->RAV1(2)   --------->DEAR3(1)               <----    --------->YAB1 --------->MYB52(1)------>ZmHOX2a(1)        <---------ABI4(2)      ------>NtERF2 -- ------GT1  <---------ANAC46 <-------TEIL<---------LBD16      --------->MYB46(3)    --------->DEAR3(1) --->YAB1  <---------LBD16 <---------ARR14(2)    --------------->AGL15 --------->MYB52(1)  <---------ATHB12   caacattcaaaatggcggactcaccggtggattcatctcctgcccctgaaacctcaaatgggacaccaccgtcaaacggaacatcgccgtctaatgagtc  16466100                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                           --------->MYB46(3)                                                                                         --------->AtMYB61                                                                                         <---------ALFIN1                                                                                        --------->MYB46(3)                                                                                  <------NtERF2                                                                                  ----------->RAV1(2)                                                                                  --------->ATERF1(1)                                                                                 --------->ABI4(1)                                                                                 <---------ATERF1(1)                                                                                <---------ATERF1(2)           <---------ALFIN1                                                     --------->DEAR3(1)        --------->ANAC46                                                        --------->RRTF1(2)        <---------ALFIN1                                                        --------->RAP2.3(2)      ----------->RAV1(1)                                                       <---------ALFIN1      ------>NtERF2                                       <---------ARR11(3)    --------->ATERF1(2)     --------->DEAR3(1)                                 --------->ARR14(2)      --------->RRTF1(3)    <------NtERF2                                       <---------ARR14(2)      --------->RAP2.3(3)   <---------ATERF1(1)                                  <---------ARR11(3)      --------->DREB2C(2)   ------>NtERF2                                   ----------->RAV1(1)         --------->ATERF1(1)  <---------ATERF1(2)                              ------>NtERF2               --------->DEAR4(2)  --------->DEAR3(1)                               --------->LBD16             --------->RRTF1(1)  --------->RRTF1(2)                   <---------ARR11(3) --------->ARR11(3)   --------->ORA47(2)  --------->RRTF1(3)                   --------->ARR11(3)<---------RVE1(1)     --------->ERF1      --  --------->ANAC46                     --------->ARR14(2)<---------GLK1(1)     --------->RAP2.3(1) --  --------->DREB2C(2)             <---------YAB1  --------->ANAC46            --------->ABI4(1) -----  --------->RAP2.3(3)            --------->TOE2(3)--------->ANAC58            ------>NtERF2<---------MYB52(2)  --------->ATERF1(2)           --------->YAB1    --------->ANAC58            <---------ATERF1(1)  --  --------->RAP2.6(2)        --------->AtMYB61   <---------LBD16             --------->ANAC46  ------  --------->RAP2.3(2)     <---------ALFIN1      ------>ZmHOX2a(1)            --------->DEAR3(1)------ --------->ORA47(2)       --------->AtMYB61     <---------ATERF1(1)         --------->MYB46(3) ------ --------->RAP2.3(1)     --------->MYB46(3)    <---------ALFIN1      <----------DOF2 <---------ZAT14< --------->ERF1        --------->AtMYB61   --------->At4g35610    <----------DOF2------>NtERF2------>MYB83 ---------ATERF1(1)    <---------ALFIN1<---------ARR14(2)--------->GLK1(1) <---------At5g28300------>MYB46(1) -----WRKY38(1)        --------->ANAC46<-----------ARR10--------->ARR11(3)<-----------GT1--------->DEAR3(1) ------->DEAR3(1)     --------->MYB46(3)   <---------At4g35610  <---------At4g35610 <---------ATERF1(1)   atcgccgccaacaccaccttcttcaccaccaccatcatcaatatctgctcctccgccagatatctccgcttctttttcaccgccgcctgcaccaccaacg  16466200                                         <---------REM1(1)     <-----------HVH21                 <-------GAMYB     <-----------TGA1                 <-----------RAV1(1)    --------->bZIP60(2)             <------NtERF2    --------->ANAC46                ----------->RAV1(2)       <---------ATERF1(1)    --------->ANAC58               ------>NtERF2             --------->DEAR3(1)    --------->O2                  --------->RAP2.3(3)      <---------At4g35610    --------->ANAC58              --------->DEAR3(1)       --------->LBD16   <-----------STF1               --------->ATERF1(2)      --------->At4g35610            ----------- -ALFIN1                          <---------ATERF1(2)      --------->ZAT14                <---------At4g35610 >DEAR3(1)                        --------->RAP2.3(2)     --------->DEAR3(1)             ------->TEIL >AtMYB61                        --------->ATERF1(1)   <---------ALFIN1                 <---------ALFIN1 ------->ANAC46                  --------->ORA47(2)   ----------->HVH21              ------->PIF5 ------->ANAC58                  --------->DEAR4(2)  <-----------TGA1                <-------PIF5 -->GAMYB<---------At4g35610     --------->RAP2.3(1) <-----------HVH21       ------>ZmHOX2a(1) ------->ANAC58                 <---------ATERF1(1) --------->ANAC55(2)  <---------ARR14(2) --->ANAC46                 ---------->CDC5         <---------ANAC55(2)  --------->ARR14(2) --------- --->ANAC58     --------->REM1(1)--------->ERF1     --------->ANAC46     --------->GLK1(2)--------->At4g35610 --->ANAC58   ------>ZmHOX2a(1)--------->DEAR3(1)--------->GLK1(2)  --------->LBD16 ----------->RAV1(2) ---------MYB52(2)         ------>ZmHOX2a(1) <---------At4g35610  <---------ZAT14 <---------ALFIN1   caagaaacgtcacctcctacatctccgtcctcatcgccgcctgttgtagctaatccgtcaccgcagactccagagaatccttctccacctgcacctgaag  16466300  Previous    Next  AGI:  At4g34430.1    Description:  CHB3 (Arabidopsis thaliana switch 3D); DNA binding / transcription factor. Identical to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member (SWI3C) [Arabidopsis Thaliana] (GB:Q8VY05;GB:O65671;GB:Q8GZ04;GB:Q9SZ08); similar to ATSWI3C (Arabidopsis thaliana switching protein 3C), DNA binding [Arabidopsis thaliana] (TAIR:AT1G21700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61314.1); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); co Range:  from: 16460924    to: 16465327    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g34440.1    Description:  protein kinase family protein. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18810.1); similar to putative receptor protein kinase PERK1 [Glycine max] (GB:BAE46451.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) Range:  from: 16465832    to: 16468960    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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