Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ---------->DOF2 ------->TOE2(3) -------ANAC55(2)                                                     <-----------HVH21 ------>ANAC58             <-------TEIL                   <---------GLK1(2) ------>ANAC58--------->ANAC58                        <-----------------AG           ---------->DOF2 ->AtSPL3     --------->ANAC58       <-------TEIL <---------------AtSPL8        <---------ALFIN1   acgtaagttaaagagtaggcaagtgaagattcatggaggttcattgtcaaaacatgtacagaattgggaagaggtcatgaccacacttaaaggaaccaat  16460500                            --------->AHL20(2)                            <---------AHL20(1)                            <---------AHL20(2)                                                     <-                        <---------AHL20(2)           <---------MYB52(2)                     ---------                       <---------AHL20(2)          ------>MYB83                            <---------                       --------->AHL20(2)          ------>MYB46(1)                     <----------DOF2                      --------->YAB1             --------->AtMYB61             <-----------GT1<------            --------->REM1(1)<---------AHL20(2)  <---------MYB59  <------ZmHOX2a(1)   <---------DAG2   ttcgaaaatttcttacaccaagaattttaatttttttttgtatatatcagaccaaacaaacccttgtaggaaagttttgtttcacttgccttttttcttt  16460600                                                                                            <--------                                                                                            <--------                                                                                           <---------ARR11(3)                                                               <-------GAMYB               --------->ARR11(3)                                                              <---------ANAC46             <---------GLK1(2)    <---------MYB52(1)                            --------->AHL20(2)                      <---------RVE1(1) ----------GT1                                    <---------AHL20(2)              ----------->RAV1(2) ->ID1          --------->ALFIN1                --------->CCA1(2)                 <---------LBD16 --GT1 --------->At4g35610                     <---------ARR11(3)            <---------ANAC58 ----DOF2<----------DOF2--------->AHL20(2)     --------->ARR11(3)            <---------ANAC58   tttgctgtttgctgtagggtttggcattaattctcttaaatatgaagaagatttaaacaaaatttcgttgaaaattgtttcttcccctgaagagattttt  16460700                                 --------->YAB1                           <---------AHL20(2)        --------->TOE2(3)--------->YAB1         --------->ANAC58         <---------AHL20(2) -RVE1(1)         --------->At4g35610           --------->ANAC58         --------->AHL20(2)         - -CCA1(1)   ---------->DOF2     <---------YAB1---------->DOF2           <---------WOX13(1)  ---------   tatctaaatttcttaaaagcagaagaatcacaaaattatagtgaaaccgaaagaaaccagagcgatttagtttgatttattttgttcaattcaacatcaa  16460800                                                                           <---------WRKY18(1)                                                                          ----------->HVH21                                                                         <-----------HVH21                                                                        --------->TGA1a                                                                        <---------O2                                                                        =============================                                                                        <---------ANAC46                                                                        --------->O2                                                                        <---------TGA1a          --------->At5g28300                                           --------->bZIP60(2)     ------>MYB46(1)                                                   ------>NtERF2     ------>MYB83<---------LBD16                                       --------->LBD16     --------->MYB52(1)                                            --------->ANAC46   <---------MYB111(1)                                             --------->ANAC58   --------->MYB46(3)                           <-----------GT1  =================bZIP_DOF          -   <---------MYB46(2)                         <---------AHL20(2) ---------->DOF2                   <-   --------->AtMYB61   ----------->GT1    --------->ATHB12      <---------ATHB12                   --  --------->ANAC46   --------->SPL7     <---------WOX13(1)     --------->ANAC58                    <-  --------->ANAC58  <---------MYB52(1) <------------CBF        --------->ANAC58                   <--  --------->ANAC58 --------->LBD16    --------->ATHB12         --------->ANAC46             <-------- -------->ZAT6  --------->MYB52(1)  <---------WOX13(1)      --------->MYB46(3)           <---------ALFIN1 >TOE2(3)----------->GT1           <------------CBF --------->LBD16--------->ANAC58    ----------->RAV1(1)   taacaccaaaccggtaaaaaccggaaggctaattcgagattgattgatttaaaccggacaaaaccactcaagccgcgtgaccgagtttccaacacattgc  16460900 ======================bZIP_DOF -------->GLK1(2)       ----------->GT1 --------ARR14(2)       *TSS ------->ARR14(2)      <---------ZAT6         <---------ANAC46         <---------ARR14(2) --------GLK1(2)       ----------->GT1     ----------->HVH21           --------->ARR14(2) -------At4g35610---------->DOF2          --------->At5g28300     <---------LBD16 ----CBF    ---------->DOF2           --------->MYB52(1)         --------->ALFIN1   agattccagtcccaaaaagaaaagagagttaaaaatgcaaaaacggtgaaggggaagagaagcgaaattgggggattgggaatagcaacgttttgcaaat  16461000                                                                                               <-----                                                                                               ------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             --------                                                             <----------DOF2             --------->ARR14(2)                            --------->ZAT14             ----------->HVH21                --------->GLK1(2)                            <---------ZAT14       <---------ANAC58                       <---------ARR14(2)            <---------At4g35610                   --------->ALFIN1         <------ZmHOX2a(1) --------            --------->At4g35610                   <---------ANAC58    --------->ALFIN1  <---------GLK1(2)      <----------DOF2  ---------->DOF2          --------->ALFIN1    --------->CCA1(2)------>NtERF2   ggtctcttctttgtagctgcaattgcaaagaacactgagagagagagagagtgtgtgtgtgacctttgagagatggaggaaaaacgacgcgattctgctg  16461100                                                                 <---------TGA1a                                                                 <---------O2                                                                --------->ATERF1(1)                                                                <------NtERF2                                                               <---------ATERF1(1)                                                               ------>NtERF2                                                              ----------->HVH21                                                           <---------DEAR3(1)                                                           --------->O2                                                        <------NtERF2                                                        ----------->HVH21                                                        --------->ATERF1(1)                                                       <---------ATERF1(1)                                                       <-----------HVH21                                                       ------>NtERF2                                                       <---------RAP2.3(1)                                                      --------->RAP2.3(3)                                                      --------->RAP2.3(2)                                                      --------->RRTF1(2)                                                      --------->ANAC46                                                      --------->PCF2                                                      --------->DEAR3(1)                                                      <---------TCP16(1)                                                      <---------TCP20                                                     --------->RAP2.3(1)                                                     --------->ATERF1(1)                                                     --------->ERF1                                                     --------->RAP2.6(1)                                                     <------NtERF2  <---------ATERF1(1)                                                     --------->RRTF1(1)                                                    <---------ERF1------>NtERF2                                                    --------->LBD16<---------DEAR3(1)                                                    <---------ORA47(2)                                                    <---------RAP2.3(1)                                                    <---------ATERF1(1)                                                    <---------RRTF1(1)                                                    <---------DEAR4(2)                                                    ------>NtERF2--------->O2                                                   <---------RAP2.3(3)                                                   <---------DREB2C(2)   <---------AtMYB61                                                   --------->ATERF1(2)<---------DEAR3(1)                                                   <---------RRTF1(3)------>NtERF2                                                   <---------DEAR3(1)<---------LBD16                           <---------GLK1(2)       <---------ATERF1(2)--------->ALFIN1                           --------->ARR14(2)      <---------RRTF1(2)--------->ATERF1(1)                     <---------LBD16  --------->At4g35610 ------>NtERF2 <------NtERF2                   <---------AGP1 --------->LBD16  <---------RAP2.3(2)<---------ANAC46                  --------->At4g35610 <---------At4g35610--------->DEAR3(1) ----HSFB2a(2)    <---------At4g35610 ----------->RAV1(2)<---------ALFIN1<---------TOE2(2) --->HSFB2a(2)  <--------P <---------ARR14(2) --------->At4g35610--------->DEAR3(1) --ZAT2        <---------MYB52(1) ------>NtERF2   --------->ATERF1(1)<------NtERF2 ->ZAT2<----------DOF2   ----------->ARR10 <---------At4g35610<---------DEAR3(1) --At4g35610<---------ANAC46     --------->ANAC46 <---------LBD16<---------bZIP60(2)  ---------->DOF2 --->RAV1(2)<---------ANAC58    <---------LBD16  ------>NtERF2--------->DEAR3(1) ---------->DOF2 ->At4g35610<---------ANAC58--------->GLK1(2) <---------ATERF1(1)===========================bZIP_DOF   gaaccctagcttttgctggtagctctggagattctccggcatctgagccgatgccggcgccacggcgacgcggcggaggtttgaaaaggaaagcgaatgc  16461200                                       <------ZmHOX2a(1)                               <------NtERF2                              ------>NtERF2                              <-----------HVH21                             <---------ANAC46                             --------->RAP2.3(3)                             --------->RRTF1(3)                             --------->RAP2.3(2)                             --------->DEAR3(1)                            --------->RRTF1(1)    <-----------HVH21                            --------->ATERF1(1)  --------->O2                            --------->DEAR4(2)   ==================================bZIP_DOF                            --------->ERF1       <---------O2                            --------->ORA47(2)   <---------ANAC58                    <---------ANAC55(2)                            --------->RAP2.3(1)  <---------TGA1a                  <---------MYB52(1)                            <------NtERF2        <---------ANAC46              <---------LBD16                           <---------ATERF1(1)   <---------ANAC58       <----------DOF2                           ------>NtERF2--------->ARR11(3)          <---------ANAC58 --------->ANAC55(2)                           <---------RAP2.3(1)   --------->TGA1a<---------ANAC58 --------->LBD16                          --------->ANAC46       <---------ANAC55(2)<---------ANAC58<-------TEIL  <---------ANAC46    ----------->RAV1(2)      <---------ANAC46 <---------ANAC58--------->ANAC46<----   tcttgggggttctaatttcttctcttctgcgccgtcgaagaggatgttgacgcgtgagaaggcgatgcttgcttctttttctccggtacataatgggcct  16461300                                                <-------GAMYB                                               ----------->GT1                                           <---------ARR14(2)                                          <-------GAMYB                                          <------NtERF2                                         <---------SPL7                                         <---------MYB46(3)                                        <---------ANAC46                                       <---------LBD16                                       --------->ATERF1(1)                                       <---------At4g35610                                       <------NtERF2                                      <---------RRTF1(1)                                      <---------DEAR4(2)                                      <---------RAP2.3(1)                               <------------                                      <---------ORA47(2)                          <---------ANAC46                                      <---------ERF1                             <---------At4g35610                    ------>NtERF2     <---------RAP2.6(1)                        <---------LBD16                   <---------ANAC46   ------>NtERF2                             --------->ALFIN1                   --------->DEAR3(1) <---------ATERF1(1)                      <---------PCF2                  <------NtERF2      --------->DEAR3(1)                        <---------RAP2.3(3)                  --------->ATERF1(1)<---------RRTF1(3)                       <---------DEAR3(2)                 ------>NtERF2       <---------RRTF1(2)                       <------MYB83                 <---------RAP2.3(1) <---------RAP2.3(2)                      <---------ANAC58                 <---------DEAR4(2)  <---------RAP2.3(3)                      <------MYB46(1)                 <---------ATERF1(1) <---------RAP2.6(2)                     <---------MYB46(3)                --------->DEAR3(1)   --------->ATERF1(2)                     --------->MYB111(2)                <---------DEAR3(1)   <---------ATERF1(2)                     <---------DEAR3(1)               --------->ATERF1(1)   <---------DEAR3(1)                      --------->MYB111(1)               --------->RAP2.3(1)  --------->ATERF1(1)                      --------->MYB55(2)              --------->At4g35610   <---------ABI4(1)                       <---------MYB55(1)              <---------At4g35610   <------NtERF2               <---------YAB1<---------ANAC58              <---------ATERF1(1)  <---------ATERF1(1)    <---------TOE1(2) --------->ALFIN1          <-----------HVH21       <---------DEAR3(1)      <---------TOE2(2) <---------ANAC46 ------DOF2 <-----------RAV1(2)   ---------->CDC5        <------NtERF2    <---------MYB46(3)   ttaactagagctcgtcaggcgccgagtattatgccctcggcggcggatggggttaagtcggaggttttgaatgtagcggtgggtgcggatggagagaagc  16461400  Previous    Next  AGI:  At4g34420.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47777.1); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) Range:  from: 16456601    to: 16460656    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g34430.1    Description:  CHB3 (Arabidopsis thaliana switch 3D); DNA binding / transcription factor. Identical to Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member (SWI3C) [Arabidopsis Thaliana] (GB:Q8VY05;GB:O65671;GB:Q8GZ04;GB:Q9SZ08); similar to ATSWI3C (Arabidopsis thaliana switching protein 3C), DNA binding [Arabidopsis thaliana] (TAIR:AT1G21700.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61314.1); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); co Range:  from: 16460924    to: 16465327    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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