Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             <---------AHL20(2)              --------->ANAC46   <----------DOF2        <---------AHL20(2)                                          <---------At4g35610 ------->GLK1(1)          --------->AHL20(2)                                          --------->At4g35610 --------GLK1(1)---------->DOF2                                                       --------->ZAT2 ---ZmHOX2a(1)--------->ANAC58                ------->GAMYB                           <---------ZAT2- -ARR11(3)    --------->ANAC58   <---------ANAC46      <-------TEIL              --------->AtMYB61  < >ARR11(3) ------>ZmHOX2a(1)     ----------->GT1     --------->TOE1(2)   --------->CCA1(2)         <-   gaactctttagtccttacgaaagttgaaataaatggagtaaacaacaacgaaaaacgtacaagtgatgcattgagaaatgagacctccagcttcagactt  16454200                                ----------->RAV1(1)                               --------->ANAC46                               --------->ANAC58                               --------->ANAC58                               <----------ID1                         --------->LBD16                        --------->LBD16   --------->ANAC58  --------->ZAT18   --------->ANAC58<---------GLK1(1) -------->WRKY18(1)--------->GLK1(1)                               --------->ARR11(3) ---------MYB52(1) --------->At4g35610          <---------ZAT6 <------ZmHOX2a(1) <----------DOF2    < ----------HVH21  <---------ARR11(3) ---------->DOF2    <-------TEIL ---------->DOF2     --------->AtLEC2   ccgtcaagcattgaattcaagagctccctgaatacgacataaaccccctaatgttagattcactaggaagataaagagagaggctttagctatgcagaga  16454300         --------->ARR14(2)                 --------->YAB1        <----------DOF2     --------->ANAC58         <---------ARR11(3)             --------->MYB46(3)     <-----------GT1        --------->ANAC58         --------->ARR11(3)           --------->MYB52(1)--------->ANAC46           <---------ATHB12         <---------ARR14(2)         <---------MYB52(2)  --------->ANAC58         ------>MYB46(1)         <---------GLK1(2)          <---------MYB46(2)---------->DOF2            ------>MYB83<------- ---------ANAC55(2)                 <---------MYB111(1) --------->ANAC58    <-----------GT1  <-------   ttaagtaaacagattttccctaaacccataagtctctaactaacaaacaaaatcgaaaacgcaattttctttctcatataaccaaatcacgaattgctta  16454400                                                     <------MYB46(1)                                                     <------MYB83                                                    <---------MYB46(3)                                                   <--------P        --------->DAG2                   <---------ZAT14       ---------->DOF2                   <---------ZAT18  --------->HSFB2a(2)                    --------->ZAT18                                           --  <---------HSFB2a(2)                   <---------ANAC58      --------->LBD16                      <- --ANAC58                               <---------ANAC58    <---------LBD16                     ----- --ANAC58           ----------->GT1  <------ZmHOX2a(1) ----------->HVH21                       <-----   agttatggaaaaagggagagaattgaaaaatcgagagaaggagcgtacttggagttggtgacaccggagaagagggaaacagagagagtgtttccacggt  16454500                                    --------->DAG2                              --------->RAP2.3(1)                              <------NtERF2                             <---------ERF1                             <---------ATERF1(1)                             <---------ORA47(2)                             <---------DEAR4(2)                             <---------RAP2.3(1)                             ------>NtERF2                            <---------RAP2.3(2)                            <---------RAP2.3(3)                            --------->ATERF1(2)                            <---------ATERF1(2)                            <---------DEAR3(1)                            --------->DEAR3(1)                           --------->ATERF1(1)                           --------->RAP2.3(1)                          <---------ATERF1(1)                          <---------ORA47(2)                          <---------RAP2.3(1)                          <---------DEAR4(2)                          --------->LBD16                          ------>NtERF2                                                    <---------ALFIN1                         --------->ATERF1(2)                                               --------->ANAC58                         --------->DEAR3(1)                  <-----------GT1         <------ZmHOX2a(2)                         <---------RAP2.3(3)           ----------->GT1              <---------ARR14(2)                         <---------RAP2.3(2)          <---------TOE2(3)             --------->ARR14(2)          --------->TOE2(3)<------NtERF2        <---------RVE1(1)                <------NtERF2   --------->AHL20(2)    <---------ATERF1(2)   <---------ARR11(3)               --------->LBD16 ------->ICU4            <---------DEAR3(1)    <---------GLK1(2)               --------->DEAR3(1) --------YAB1           <---------LBD16        --------->ARR11(3)             <---------LBD16 ---->WRKY18(1)    <----------DOF2 ---------->DOF2    <---------TOE1(3)<-----------GT1     --------->ANAC58 ---ZAP1  --------->TOE1(3)<---------ABI4(1) ----------->ARR10      <---------ICU4 --------->GLK1(1)   caagattaaaaaccttcatagctttagccggcggcgaaaaagagggcaagatttttagggttattacgacttattacttcgccggagatcgacacacatt  16454600                                                    <----------DOF2                                                ------>ZmHOX2a(2)                                               <------ZmHOX2a(2)                                              <---------ARR11(3)                                              --------->ARR14(2)                                              <---------ARR14(2)                                              --------->ARR11(3)                                              <---------ARR14(3)                                              <-----------ARR10                                        <---------HSFB2a(2)                     ---------->DOF2                         --------->YAB1 --------->HSFC1(1)           --------->AHL20(2)             -                      ---------->DOF2   --------->HSFB2a(2)         --------->AHL20(2)             --                     <---------WRKY45   <---------HSFC1(1)<----------DOF2 --------->AHL20(2)       --        --------->At4g35610          *TSS     --------->ARR14(3)--------->AHL20(2)                 --        <---------At4g35610  <-----------GT1----------->ARR10--------->YAB1    --------->AHL20(2)----   cggcgaagtcagaagaagactagtcaaagataaacccttcttctagaagatcttctttctctttcataaaataaaaaaaaataaaagactacattacata  16454700                                                                            --------->ANAC58                                                                            --------->ANAC46                                                                            --------->ZAT6                                                                            --------->ANAC58                                                                          <-----------GT1                                                                         *TSS                                                           <---------At4g35610                                                           --------->At4g35610                                                          <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                          <xxxxxxxxxxxxxxxsmallRNA(le3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                         <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                       <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->TOE1(2)                    <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <------ZmHOX2a(1)        <---------At4g35610      <xxxxxxxxxxxxxxxxxxsmallRNA(s2)  <-----------RAV1(2)    <----------DOF2              <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <------NtERF2    --------->TOE2(2)                 --------->MYB46(3)  <----------DOF2 ----->NtERF2    --------->HSFB2a(1)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ------->ANAC58  <---------HSFB2a(1)             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->ANAC58  <---------HSFC1(2)              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------->ANAC46  --------->HSFC1(2) <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <----- ----->ANAC46   ------->TEIL  <xxxxxxxxxxxxxxxxsmallRNA(si3)   <-----------RAV1(2)            -------   cgcgccaggaaggggtcgaaccttcgactttctgcttaggaaacagacgctctatccactgagctacaggcgctctttacgctaccaagtcgctaataac  16454800                                                                                                  <--                                                  --------->O2                                    ---                                             <-----------GT1                                      <--                                       <---------YAB1    --------->ZAT2                     --------- <---------ZAT6                      --------->YAB1<-----------HVH21                 <---------ANAC46 ----TOE2(3)                     <---------YAB1   <---------O2                 <---------YAB1<<<<<<<< -->MYB52(1)             <-----------GT1--------->YAB1   <---------ZAT2  <---------YAB1   ------->TEIL   gtagtattagacactaaacaagtctttttaccatttcgattatcatattacgacgtcgaagcagggtattagactatcagtgtgatagtgtgtatgttaa  16454900                                                                              <----------DOF2                                                        <---------AHL20(2) <---------ARR11(3) ---------ARR10                                      <---------AHL20(2)    --------->ARR11(3) ------>ARR11(3)              ------->TEIL           --------->AHL20(2)    --------->AHL20(1) -------ARR11(3)          --------->SPL7            <---------AHL20(2)     <---------AHL20(1)       < -->GT1                   <---------TOE1(2)         --------->AHL20(2)    --------->CCA1(1)         - <MYB98                   --------------->AtSPL3<---------YAB1            --------->RVE1(1)       <--   aatctcatcaaaacaaacatcgaaatcggacgtacttcaacattgaatttctgattaaattatcgatgtttgccaaatatcttttgaatagtagacactt  16455000                                                                                             <-------                                                                                 <---------ANAC46                                                                              <---------MYB52(1)                                                                             --------------->AGL15                                                                             <---------------AGL15             --------->LBD16                                                <-----------------AGL3            ----------->GT1                                                 ----------------->AGL2            --------->ANAC46                                                ----------------->AG-----           ===================================================================================MADS_MADS           ----------------->AGL3  --------->ANAC46                         ----------------->AGL1 ---------ARR11(3)            >>>>>>>>>MYB98                             --------->ARR14(2)  -------- -------->ARR11(3)        ----------->GT1           --------->AHL20(2)   <---------ARR14(2) --------- -------TOE2(3)      <------ZmHOX2a(1)              <---------AHL20(2)  <---------CCA1(2)   <--------   aagatttcaagtacccgtaaaaaggatggagtaacatactcaatagaaaactaattaatctattccatccagccatatcccttaagtggaatcaatgatc  16455100  Previous    Next  AGI:  At4g34412.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO47805.1); contains InterPro domain Kinase binding protein CGI-121 (InterPro:IPR013926) Range:  from: 16452964    to: 16454637    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g34415.1    Description:  pre-tRNA. tRNA-Arg (anticodon: CCT) Range:  from: 16454701    to: 16454773    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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