Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->LBD16                                                                         <---------SPL7                                                          --------->AtMYB61                                                          <---------ALFIN1                                                       <-----------GT1  <---------ANAC58  <---------------AGL15                              --------->WRKY12   <---------ANAC58  <---------YAB1  --------------->AGL15                              --------->WRKY38(1)<---------ANAC55(2) ----------------->AGL3                           <---------ANAC58      --------->ANAC55(2) <-----------------AGL2                           <---------ANAC46     --------------->AtSPL3 <-----------------AGL3                           <---------ANAC58   ------------------>SPL14 -------WOX13(1)                           <---------TOE2(3)<---------ALFIN1       <-------GAMYB----- ------ANAC58             <---------ARR14(2)   <---------DEAR3(1)  --------->At4g35610 <---------YAB1 ------ANAC58             --------->ARR14(2) <------ZmHOX2a(1) --------->AtMYB61  ----------->GT1  <- ---->ATHB12       <----------DOF2       ---------->DOF2 --------->MYB46(3)--------->SPL7--------->TOE2(3) ----YAB1     --------->YAB1             --------->MYB52(1) --------->ANAC46  --------->ANAC46<------ >ICU4        <---------ICU4        ---------->DOF2<-------GAMYB   <---------At4g35610 <---------TOE2(3)   attgctaattttagaatcattctttgtggattttggacaaaagtaaaggatggcgttgaaccacacctctgcttccgtaccagacagttaacattataac  16433900                         <------ZmHOX2a(1)                      <------NtERF2        --------->ARR11(3)         <---------TOE2(3)        <---------ARR11(3)    --------->WOX13(1)  <---------WOX13(1)                  <---------CCA1(2)  ---------->DOF2     <-----------RAV1(2)       --------->ATHB12                  <---------ANAC46 ---->ZAT6          <---------ANAC46           <---------AHL20(2)              ----------->HVH21 ---------DOF2   =================RAV          --------->AHL20(2)            --------->ANAC55(2) -----GT1        <-----------RAV1(1)----------->GT1                  --------->AHL20(2)------->TEIL   actttaaagagatgtttctatggcgcaggaatcaattagggtaaaaagattaattgatttttgttgttagataaatttcatgtgacatgtatctatattt  16434000                                --------->YAB1                      <---------MYB59                      <------------MYB.PH3(2)                      <---------MYB52(2)                      <---------MYB46(2)                      <---------MYB111(2)                      <---------MYB111(1)                    <----------DOF2                   ------>ZmHOX2a(1)                  --------->ARR11(3)         <-------TEIL       =                  <---------MYB59                 <-----------GT1  <-----------RAV1(1)              <         ---------->DOF2--------->MYB52(1)<-----------GT1<----------DOF2  ----------->RAV1(1)       -   gaactgaaactgaaagtcatcctaactaacttattcatagtattttacatttttactatctttctttttttgttgccaacagattcaattttagtttgac  16434100                                                                                           ------->TEIL                                      <---------ATHB12                                  <---------ANAC46                             <---------ARR14(2)                                         <---------ANAC58                             ------->TEIL             <---------MYB46(3)                <---------ANAC55(1)                             --------->GLK1(2)        --------->ATHB12                  <---------ANAC58                             --------->ARR14(2)    ----------->GT1                      --------->ANAC55(2)                             <---------ARR11(1)  <---------WOX13(1)                     <---------ANAC55(2) ===========================================================MADS_MADS                  <---------TOE2(3) ---------------AGL15       <---------ARR14(1)<---------YAB1                <------ZmHOX2a(1)       - -------------->AGL15   --------->MYB52(1)  <---------------AGL15     ---------->DOF2 <-----------GT1   tactactactagtaatatccaaaaaaaaacgaatcttcaaatcaaactctaattggtgattagagtggaaagaaaagaggaattgaatttacgtatgtac  16434200                                                                                              -------                                                    --------->YAB1                            -------                                                   --------->ICU4                             -------                                                   <---------ATHB51                           <------                                                <---------------AGL15                         -------                                               <-----------------AGL1                         -------                   ---------->DOF2             ------------>CBF                               <------           --------->RVE1(1)      <---------AHL20(2)<---------ICU4                            -------           --------->CCA1(1)  <---------ZAT6   <-----------------AG                         ------>NtERF2     ----------->GT1  <---------ZAT18         --------->YAB1                       --------->AtMYB61- --------->DOF2--------->WOX13(1) --------->AHL20(2)--------->ATHB51 <----------DOF2       --------->DEAR3(1)   aaaaaagaagaaaatatccatcaatgcgcttagtattaaaaaaaactttcacaattatggcaaaaaaaacactttcacattcggaccaaaacgacgacgt  16434300        ------->TEIL -->ANAC46 -->bZIP60(1)                                                  --------------------->WRI1 -->ANAC58                     --------->DAG2                <---------HSFB2a(1) ---bZIP60(1)                 ---------->DOF2               --------->GLK1(2) -->ANAC55(2)              --------->At5g28300             <---------GLK1(2) ---->GT1                 ----------->GT1                 <------ZmHOX2a(1) ---ANAC55(2)          ------------------------>ANAC81 --------->CCA1(2) -->ANAC58           ---------->DOF2                  <---------ARR14(2)          ------>ZmHOX2a(1) -------->TOE2(3)<---------AtLEC2    *TSS             --------->ARR14(2) <-------TEIL------>ZmHOX2a(1)   aacataaatgtatcgttttgcataaaagcagtaaaagtgagagagagagagagacagataggaatctttgagcgattcgtcttcctcctctatcgccctc  16434400                              --------->ARR14(2)                              <---------ARR14(2)                              <---------ARR11(3)                              --------->ARR11(3)                              --------->KAN4(2)                              <-----------GT1                             <---------KAN4(1)                             --------->GLK1(1)                             <---------GLK1(1)                             --------->HSFB2a(1)                             <----------TaMYB80                             --------->KAN4(1)                             <---------HSFB2a(1)                    ----------->HVH21                   ------>ZmHOX2a(2)                  <---------At4g35610                  --------->At4g35610                  <---------bZIP60(1)                  --------->bZIP60(1)                 --------->ARR11(3)                 <---------ARR11(3)    <---------MYB52(1)                                 <----------DOF2          <---------ARR14(2)<---------KAN4(2)                                       ------>ZmHOX2a(2)          --------->ARR14(2)---------->TaMYB80                                    --------->ARR14(2)        --------->LBD16    <---------GLK1(2)     ------>ZmHOX2a(1)                <---------ARR14(2)       --------->ANAC46  --------->LBD16    <-----------GT1     <-----------GT1   <---------ARR11(3)      <---------LBD16  <---------LBD16<----------DOF2        <---------MYB52(1)   --------->ARR11(3)  <-----------HVH21=====================================HOX2a_HOX2a           --------->LBD16   tactcttcaccggaactgtgatctcaccggaatatccctcctttatttatcctctactcatccgttttactctctccctccgtcgatcttctctttctct  16434500                                                                              <---------ANAC58                                                                       <------ZmHOX2a(1)                                                                 <---------LBD16                           --------------->AGL15          <---------YAB1      <---------ANAC58      <                <----------DOF2                     <---------YAB1  <------NtERF2                 ---     ------>NtERF2   <---------ICU4          ------>ZmHOX2a(2)  <---------ANAC46                 <---     <---------ATERF1(1)   <---------------AGL15 <---------MYB46(3)--------->LBD16               <---    --------->DEAR3(1)    --------->TOE2(3)  =================================HOX2a_HOX2a   ------>ZmHOX2a(1) ------>ZmHOX2a(2)  <---------YAB1       <---------YAB1<---------YAB1  ==============================   tgatcgcctccgtccattctttatcatttcttaattcagaattgtgatcgatggatgattattttagcgcggaggaagaggcttgctattactcctccga  16434600          <---------AtLEC2   --------->GLK1(2)                                                     <---------GLK1(2)  <---------GLK1(2)                                                    <---------TOE2(2)  <---------ARR11(3)                                         <------ZmHOX2a(2) ---------YAB1                                              <---------ARR11(3) ------>YAB1                                                --------->ARR11(3) ---ZmHOX2a(2)                                      ================HOX2a_HOX2a     <-----------GT1 ------ATHB12         <---------ICU4                ------>ZmHOX2a(1) <-----------RAV1(2) ===HOX2a_HOX2a    --------->YAB1         ------>NtERF2 ---------->DOF2<---------TOE1(2)          ---   tcaagattctttggatggaattgataatgaagagtctgaattgcagcctctgtcctctaaaagatcaaacactcaggttctcttatatacactcttcttc  16434700                                                                                              <------                                                                                             <-------                                                         --------->ATHB12                    --------                                                       <-------GAMYB                         --------                                                      <---------MYB46(3)                    <--------P                                      <---------WOX13(1)<---------YAB1                     <-------GAMYB                                    --------->ATHB12<---------ANAC58                       <---------ANAC46                                  --------->LBD16   <-------GAMYB                          <---------ANAC58                              --------->ARR14(2)   <------MYB46(1)                         <---------ANAC58            <---------CCA1(2) <---------ARR14(2)   <------MYB83                       <-----------RAV1(1) --->ZmHOX2a(1)   <----------DOF2--------->ANAC55(2)<---------ANAC58              <---------DAG2   ctctcttcattcttctatctctttcttcttaatatccgtgattgtttcatatttggttgttattggtaattctcttccccctcaatttttgtgggttgtt  16434800  Previous    Next  AGI:  At4g34360.1    Description:  protease-related. similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G60910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47673.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) Range:  from: 16431945    to: 16433962    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g34370.1    Description:  IBR domain-containing protein. similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G27710.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G16090.1); similar to Putative RING zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19129.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47674.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61236.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 16434337    to: 16437313    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version