Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ------>MYB46(1)      -------->P      ------>MYB83           <---------ZAT14    ------->GAMYB            --------->ZAT14            <---------ALFIN1    --------->AtMYB61        <---------ZAT18         --------->AtMYB61   --------->bZIP60(2)   <---------MYB55(2)      --------->At5g28300    <---------ALFIN1     <---------ALFIN1   <---------MYB52(2)   --------->SPL7          ------>ZmHOX2a(2)    ------>MYB83   --------->MYB46(3)  <---------STY1(1)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  --------->ANAC58     --------->STY1(1)  <---------At4g35610        ------>MYB46(1)<<<<<<<GRF7  --------->ANAC58 --------->ZAT18        ----------->RAV1(2)        -------->P   ----------->HVH21   aggcaaccaactccaactatgtcccctacggtgaacttgctcacatctgatcccacctccactacttcccctaccacttcatgcctgacaacatatcact  16388300                                                                               <------ZmHOX2a(1)                                                                               ======================                                                                             --------->LBD16            --------------->AtSPL8                                   <---------YAB1       --------->GLK1(2)                                          <---------YAB1      --------->ARR14(2)                                          --------->ICU4                    -      <---------ARR14(2)            --------->YAB1      ---------->DOF2     <---------LBD16         -      <---------GLK1(2)            --------->At4g35610--------->ANAC58     --------->TOE1(2)        - ------>ZmHOX2a(2)                 <---------At4g35610--------->ANAC58--------->YAB1    ----------->GT1   cgatctcagattctattgtactctatatgtcattttcatcagaattgatcaagaacaagaaagaagagattattatacccaggaaccatggggtaattag  16388400                                         --------->ARR14(2)                                         <---------GLK1(2)                                         <---------ARR14(2)                                        <---------At4g35610                                        <---------HSFB2a(1)                                        --------->At4g35610                                        --------->HSFB2a(1)           <---------YAB1          --------->ALFIN1           --------->ICU4        --------->ALFIN1        <------ZmHOX2a(2)        <-----------RAV1(1)       <---------ARR11(3)     ------>ZmHOX2a(2)               <---------TOE1(2)       --------->ARR11(3)    <------ZmHOX2a(2)           <---------YAB1 ==============HOX2a_HOX2a  <---------ARR14(2)          <---------GLK1(2) -------->ANAC58            <---------ARR11(3)         -------->HAHB4 -------->ANAC58            --------->ARR14(2)        <---------ATHB12    ----------->RAV1(2) -------->AtLEC2            --------->ARR11(3) --------->ANAC46           ------>ZmHOX2a(1)     -----   acatgccaagatcatttttagtttgatgaagatcggtgtggcagattccacagcaaatgattcttatgttcacatcctctggtccagtctctctgtaatc  16388500                  ------->TEIL       ---------->DOF2                                                        --------->TOE1(2)     --------->ANAC46       --------->WOX13(1)                                --------->TOE2(2)   --------->ANAC46        <---------AHL20(2)                 <------ZmHOX2a(1)      <---------ZAT6   --------->ANAC58        --------->AHL20(2)        ---------->DOF2   <---------AHL20(2)        ====   --------->ANAC58       --------->AHL20(2)---------->DOF2  ----------->GT1  --------->TOE2(3)  ==== ---->YAB1     <---------YAB1  --------->YAB1    ----------->GT1       --------->AHL20(2)        <---   aaaacacacaaaagatgatgaaactgaaataaatcaaaacaaaacacaaagatgtaaaagaagaggaaactaattaaaaacctaagagtgtaagtgtaag  16388600           <---------ZAT2           --------->ZAT2         <-----------RAV1(2)       ------>ZmHOX2a(2)      <------ZmHOX2a(2)     --------->ARR11(3)                                      <-----------GT1     <---------ARR14(2)                                    --------->KAN4(2)     --------->ARR14(2)                                   <---------ICU4     <---------ARR11(3)                                   --------->ATHB51                          <    <------ZmHOX2a(1)     --------->At4g35610            <---------MYB52(1)                        <- =============HOX2a_HOX2a <---------At4g35610        ------>NtERF2                             ------ ============HOX2a_HOX2a  <------NtERF2      ------>ZmHOX2a(1)                         <----------DOF2 ---ZmHOX2a(1)   <---------GLK1(1) <-------GAMYB  ------>NtERF2           <---------YAB1    <--------   gagagaggatcccagatgggtctctggcagcccagcctgttgttttcctctctgcctccattattcccattttttgatgattctttcttctttcttatct  16388700                                                                                 <---------ANAC58                                                                                 <---------ANAC46                                                                                 <---------ANAC58                                                                           <---------ANAC58                                                  <---------AHL20(2)       <---------ANAC46                <----------DOF2                   --------->AHL20(2)       <---------ANAC55(2)             --------->ANAC58                     <-----------TBP          <---------ANAC55(1)     <-        <----------DOF2                         --------->AHL20(2)         <---------ANAC58       <--   <---------At4g35610                          <---------AHL20(2)       --------->MYB52(1)       ---   --------->At4g35610                          <-----------TBP       --------->ANAC58            ---  <-----------RAV1(1)                         <---------AHL20(2)      --------->ANAC58            <-- ------>ZmHOX2a(2)                            --------->AHL20(2)      --------->ANAC55(2)         --- ---------At4g35610                           <-----------TBP         <---------ANAC55(2)        <--- --------ARR11(3)         *TSS              <-----------TBP           --------->ANAC55(1)        ---- --->YAB1    --------->ANAC58             --------------->AGL15       --------->ANAC46           ---- -CCA1(2)    --------->ANAC46          <-----------GT1     ---------->DOF2 --------->ANAC55(2)   <---   tgatctgctgctttcacgcttttgctgtttatgtgtgtgtattactatatatatatatagagaaagttggaaacgtaacgtatgcgtatgtgtgatgaaa  16388800       --------->ARR14(2)       <---------ARR14(2)      ----------------------->TaNAC69(2) -----------CBF -------ICU4 ----->HAHB4                              ----------->GT1 ------>ATHB12                            <---------ZAT6 ------ATHB1                            <---------ANAC46                                  <----------DOF2 ------>ATHB51                          <---------ANAC58                               <---------ARR11(3) ------ATHB51                           <---------ANAC58   --------->ATHB12            --------->ARR11(3) ----->ICU4 <---------AtLEC2       --------->ATHB51       <---------AHL20(2)     --------->TOE1(3) ----->AHL20(2)                   <---------YAB1          <---------YAB1        ----------->GT1 ------AHL20(2)   <---------ZAT18 --------->ICU4    <---------ANAC46         ---------->DOF2       <-   taattggtgtttctgcatagcacacatttgatggctataattgagtgtaaatttgtgtatattattgacaaaattagtcaaaagcttaaaatctttttta  16388900                        <---------ARR11(3)                        --------->ARR11(3)               <---------HSFB2a(2)               <---------HSFC1(1)               --------->HSFC1(1)               --------->HSFB2a(2)            ------>ZmHOX2a(1)          ------>ZmHOX2a(2)          <---------HSFC1(2)          --------->HSFC1(2)         <------ZmHOX2a(2)        <---------GLK1(2)        --------->ARR14(2)                                                  --------->YAB1      -----        --------->ARR11(3)                <----------DOF2               <---------AHL20(2)      <----        <---------ARR14(2)       <-----------GT1                     ----------->GT1         --------        <---------ARR11(3)   <---------AHL20(2)--------->TOE1(2)   <---------ZAT14    ----------->GT1 --------MYB46(3)   ---------->DOF2  <<<<<<<<<TBF1                 --------->ZAT14   <---------TOE2(3)   gtcgttgaaagatccttctagaaaaagacattttttttcttcttcttttcatacgatggctcatggctgtgtagtttattagaattttaggtgaaaaaaa  16389000                                            <---------AHL20(2)                                         <---------ICU4                                         XXXXXXXXXXXXXXXXXXXX>MIR844*                                        <---------YAB1                                        --------->ICU4                                      --------->YAB1                            --------->AHL20(2)        ----------->RAV1(1) <---------AHL20(2)    --------->ANAC58       --------->AHL20(1)    --------->ANAC58       <---------AHL20(1)                                               --------- ---->AHL20(1)             --------->AHL20(2)                                    ----------->GT1 -----AHL20(1)             <---------AHL20(2)                --------->YAB1     --------->DAG2 ->AHL20(2)    --------->TOE2(3)     <-------TEIL <-----------GT1              ---------->DOF2   tattagaagccaacaaaacttaaatgaaatttatttgcattcataattcattttaccagtttataacaacaacgtaatccaaaaagtaaaatgagaaaga  16389100                                                                            <---------MYB46(3)                                                    <------NtERF2           <------MYB46(1)                                                    --------->At4g35610     <------MYB83                                                    <---------At4g35610    --------->ALFIN1                                                  <---------DEAR3(1)       --------->MYB55(2)                                                 --------->RAP2.6(3)       <---------MYB46(3)                                                <-----------HVH21          --------->MYB46(2)                                               --------->ANAC46            --------->MYB111(2)                                               --------->ANAC58            <---------DEAR3(1)                                               ====================================MYC_MYB                                               ===================bZIP_DOF <---------AtMYB61                                               --------->TGA1a             --------->MYB111(1)                                               <---------TGA1a            <---------MYB55(1)                                               --------->bZIP60(2)      <---------MYB46(3)                                               --------->ANAC58      <-------PIF5                                               --------->O2         --------->ANAC46                                               ==================================MYC_MYB                                         --------->ALFIN1           <---------O2                                       ===========================bZIP_DOF<--------P                                       ============================================MYC_MYB                =========================================bZIP_DOF   --------->O2                =================================bZIP_DOF          <---------LBD16                ---------->DOF2        <---------O2------>NtERF2  <---------ALFIN1            --------------->AGL15      --------->O2<---------DEAR3(2)------->PIF5            <----------DOF2            <---------bZIP60(2)       <---------WRKY12            =============================================bZIP_DOF<---------WRKY38(1)            =====================================bZIP_DOF      <---------PCF5          ------->TEIL----------->GT1  <---------TGA1a         <---------TCP16(1)        --------->ZAT14                <---------ANAC46        <---------PCF2                 <------        --------->ZAT18                <---------ANAC58        <---------ARR14(2)             <------        <---------ZAT18                <---------ANAC58---------->DOF2  --------->MYB55(2) --------->ALFIN1      <---------------AtSPL8        ----------->HVH21  --------->MYB52(1)<-------GAMYB   <-----------RAV1(1) ->DOF2 <---------ZAT14         <---------YAB1 <---------O2    --------->ARR14(2) --------->MYB46(3)   atggaatttgtgtactttgaaaggaagaaaaaccactattgacgtggacacgtcggctaaaggagggtccacgggggttggtgaacaaacaatgtggggt  16389200  Previous    Next  AGI:  At4g34230.1    Description:  CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase. Identical to Probable cinnamyl-alcohol dehydrogenase [Arabidopsis Thaliana] (GB:O49482); similar to CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G19450.1); similar to Cinnamyl alcohol dehydrogenase (CAD) (GB:P30359); contains InterPro domain Alcohol dehydrogenase GroES-like (InterPro:IPR013154); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase, zinc-containing, conserved site; (InterPro:IPR00232 Range:  from: 16386731    to: 16388726    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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