Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           <---------DAG2                                                                                     --------->ARR11(3)                                                           --------->YAB1            <---------ARR11(3) <-----------GT1                                           --------->TOE2(3)       <---------YAB1 ----------HVH21                                           --------->TOE1(3) --------->AHL20(2) -----ANAC58                                             <-----------ARR10   <---------AHL20(2)<----- -----ANAC58           <---------ATHB12                 <---------CCA1(2)   --------->AHL20(2) <----- -----ANAC46<---------HSFB2a(2)                --------->YAB1         <---------MYB46(3) <----------DOF2 ---DOF2    --------->HSFB2a(2)               <---------YAB1     --------->ARR11(3)<---------TOE2(3)   gtgtcacaattctactggaaggccaatcgtgtattaagttgaattgttttgataagtcaaatcttaacatattggttatttaattaagatactttttgca  16336000                         <---------AHL20(2)                         --------->AHL20(2)                       --------->AHL20(2)                       <---------YAB1                                           <---------KAN4(1)                      --------->TOE2(3)                                        <---------ARR14(2)                    --------->ICU4                                   <------ZmHOX2a(2)                --------->At5g28300                                  --------->CCA1(2)               ----------->GT1       <----------DOF2                <---------ARR11(3)          <---------ANAC58<---------TOE2(3)                         --------->ARR14(2)          <---------ANAC58<---------YAB1                            --------->ARR11(3)      <---------AHL20(2) --------->YAB1               --------->YAB1--------->AGP1           <-------     --------->AHL20(2)<---------AHL20(2)       ============================HOX2a_HOX2a   --------->YAB1 ----ANAC58    <---------ANAC46<-----------GT1  <------ZmHOX2a(1)   <---------ARR14(2)<-------------- ----ANAC58  --------->SPL7 --------->YAB1 <----------DOF2  <-------TEIL       --------->GLK1(2)  <--   taccatataaaatcgtgcggtaaatattaatattaacaacttttactttaggaaaatcaaaattcatcaagatccagtgagaatattgctaatcagagtt  16336100                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                   --------->ZAT14                                           <-------                                   <---------ZAT14                                           <-------                              <---------YAB1                                              --------->LBD16                            --------->YAB1                                              ------->MYC2                           <---------YAB1                                               ------->MYC3                          --------->ARR11(3)                          --------->ARR14(1)<-------MYC3        <---------TOE2(3) <---------ARR11(3)                         <---------GLK1(2)  <-------MYC2   ----------->GT1   --------->AHL20(2)                              --------->ARR11(1)--------->ANAC58 --ZAT6 <---------TOE1(3)--------->RVE1(1)     <-----------GT1     ----------->ARR10   --------->ANAC46 -AGL15 <---------YAB1   --------->CCA1(1)   <---------AHL20(2)<---------ICU4  <-----------HVH21 -------TOE2(3)  ---------->DOF2 --------------->AtSPL8 ----------->GT1<-------TEIL    --------->ANAC58   aagaaatgttaagataaatcaaagaaaatatcatcactgtacaaaattttaacaaacttggttactaattagattcgaaagtgtcaaacacgcgcgtatc  16336200     <----------DOF2     <---------DAG2  <-----------GT1                                                           <-----------GT1 ---ARR14(2)       <---------ANAC46                                   <---------TOE1(2)          ---- >TEIL    <---------HSFB2a(2)                                        ============================HOX2a_HOX2a ---ARR11(1)    ----------->TGA1                                     ------>ZmHOX2a(1)       -------- -->GLK1(2)     ----------->HVH21                --------->ANAC58   --------->TOE2(2)      --------->MYB46(3) -->ARR14(2)---------->DOF2                      --------->ANAC58   --------->TOE1(2)     <------ZmHOX2a(2) --CCA1(2)--------->HSFB2a(2)                <-----------GT1    --------->WOX13(1)        =========== --ARR14(1)--------->LBD16         <---------DAG2--------->ANAC46 XXXXXXXXXXXXXXXXXXXXX>MIR856 ------   tgtttgacttttccgaaagtgacgagaaggaagacgaccttatcaattcaccagcaactctaaaatcaatcctacgatttacttcagactcgatccaacg  16336300                   --------->STY1(1)      --------->WOX13(1)                                                ----------->TBP    ======================HOX2a_HOX2a                               <---------AHL20(2)    <------ZmHOX2a(2)                                               --------->YAB1     <----------ID1    ------------>CBF<---------TOE1(2)     <---------TOE2(3)  <---------ANAC46       ---------->DOF2   --------->ARR11(3)                     <---------TOE1(3)  ----------->GT1   ---------->DOF2      - ----->At4g35610   ------>ZmHOX2a(1)    ---------->DOF2      <------MYB46(1)--------->ANAC58   ------ ->MYB52(1)  --------->ZAT6   <---------HSFB2a(2)       <-----------RAV1(1) --------->ANAC58<-------- =========================HOX2a_HOX2a  <---------AHL20(2)    <------MYB83 ---------->DOF2   *TSS <--- --->MYB46(3)<---------ALFIN1 --------->HSFB2a(2)<----------DOF2    --------->AHL20(2) ----------->GT1   gctgagatcaatctcacactcctagggttcttctaggggaattaaaggtttcttttttttgttgggttaataatataaaagcaaagaaaaggagaaaccg  16336400                                                                                           --------->ANAC58                                                                                           ------>NtERF2                                                                                           --------->LBD16                                                                                           --------->ANAC58                                                                                          --------->RAP2.3(3)                                                                                          --------->RRTF1(2)                                                                                          --------->DREB2C(2)                                                                                          --------->RAP2.3(2)                                                                                          --------->RAP2.6(2)                                                                                         --------->ATERF1(1)                                                                                         <------NtERF2                                                                                         --------->RRTF1(1)                                                                                         --------->RAP2.3(1)                                                                                         <---------LBD16                                                                                         --------->ORA47(2)                                                                                         --------->ERF1                                                                                        ------>NtERF2                                                                                        --------->ABI4(1)                                                                                        <---------ATERF1(1)                                                                                        <---------RAP2.3(1)                                                                                       <---------ATERF1(2)                                                                                       --------->RAP2.3(2)                                                                                       --------->DEAR3(1)                                                                                       <---------DEAR3(1)                                                                                       --------->RAP2.3(3)                                                                                      --------->DEAR4(2)                                                                                      --------->ERF1                                                                                      --------->ORA47(2)                                                                                      --------->RAP2.3(1)                                                                                     <---------RAP2.3(1)                                                                              <---------TOE1(2)                                                                              <---------TOE2(2)    <-                                                             <---------ARR11(3)    --------->ATERF1(1)                                                       <------NtERF2      --------->ATERF1(1)      <-                                                      --------->ANAC58    <------NtERF2--------->ATERF1(2)                                                      --------->ANAC58   <---------ATERF1(1)<------NtERF2                                                      <------NtERF2      <-----------HVH21<---------ATERF1(2)                                                     ------>NtERF2       ------>NtERF2--------->ATERF1(1)                                                    --------->DEAR3(1)  --------->DEAR3(1)--------->DEAR3(1)      <----------DOF2       <---------ANAC58       ------>NtERF2     --------->ANAC46<---------ATERF1(1) -------->ICU4              <---------ANAC58       <---------ATERF1(1)  <---------DEAR3(1)--------->ATERF1(2) --->TOE2(3)              <---------YAB1   --------->GLK1(2) --------->ARR11(3)   <---------ATERF1(1) -ARR14(2)          <---------YAB1        <---------GLK1(2) --------->RVE1(1)--------->ATERF1(1)  --- ------MYB52(1)   --------->YAB1       --------->HSFB2a(2)  --------->CCA1(1)<-----------RAV1(2) <---   taatgcttctttttcatctatcgtaattgtgcttgtttcgcctagaatctctcggcccccaaatatctcactcgccgtcgcaggcttcgccgccggcaat  16336500             <---------At4g35610 <-----------GT1                                             ----------->GT1 --------ANAC58                                             ----------->GT1 <----------DOF2 --------ANAC58               <----------TaMYB80          ---------->DOF2  <---------ANAC58 ------------>AtSPL8     ------>ZmHOX2a(1)             <----------ID1      <---------ANAC58 ------ARR11(3)          <---------At4g35610         --------->MYB52(1)   <------------------------ANAC81   ttcttaccctatttcatcttccctctcctctgatatacccataaaaacacaaaaaaaacgaaaagataaaaactttggctttagttttgttgattttgtc  16336600                                                                                                   --                     <----------DOF2          <------MYB46(1)                                     ---            <----------DOF2 --------->GLK1(2) <------MYB83                    ----------->GT1    ----   attcgattcgatttctttttcttctttcaaattctagggttttcgatttggtttcagtctaataacgagaggggagggaagagtaactaaaaccccaaaa  16336700                                                                                    --------->At5g28300                                                                                    <-----------HVH21                                                                                   <---------DEAR3(2)                                                                                   <---------MYB46(3)                                                                                  <---------DEAR3(1)                                                                                  <---------ANAC46                                        <---------TOE1(2)                        ------>NtERF2      -                                        <---------TOE2(2)                        <------NtERF2      <                                       <------NtERF2                            <---------ATERF1(1) -                                <---------ICU4                                  ------>NtERF2      --                              --------->ARR11(3)                               <---------DEAR3(1) ---                              <---------ARR11(3)                              <---------LBD16     <--       --------->DAG2     ---------->DOF2                                     <---------At4g35610 ---      ---------->DOF2<---------------AGL15                                    --------->At4g35610<--- --------->GT1      ----------------->AGL3  <-------TEIL                     <---------ATERF1(1)<---- ------>DAG2      --------->GLK1(2)    <-----------RAV1(2)           <---------MYB46(3)      <------- ------>DOF2     --------->GLK1(1)   <---------ANAC46  <-----------HVH21 ----------->HVH21   --------   aaagtcaaaaaagtttcgaaaatccaaaaaaagataatggcgcaggttcaacttcagggtcagactccgaatggttcgaccgcggcggtcacttctgctc  16336800          --------->ALFIN1        <---------ANAC46        <---------O2        <---------At4g35610        --------->At4g35610        <---------ZAT2       --------->MYB55(2)      <-----------RAV1(2)     --------->TGA2(2)     <---------MYB52(1)    <-----------TGA1    <-----------HVH21   <---------TGA2(1)   --------->bZIP60(1)   --------->bZIP60(2)   --------->ANAC58   --------->ANAC58   --------->TGA2(1)                   --------->O2   <---------bZIP60(1)                 =================bZIP_DOF   ========================MYC_MYB     --------->ANAC58   --------->O2                        <---------TGA1a   <---------TGA1a                     --------->bZIP60(2)   <---------O2                        <---------O2   --------->TGA1a              ----------->GT1  <------NtERF2                 <------MYB83 <---------DAG2 ------>NtERF2                 --------->MYB59 <---------ATERF1(1)           --------->MYB46(2)          ------>ZmHOX2a(2) ---------->HVH21            <---------MYB52(1)           --------->GLK1(1)            <----------DOF2 ---------DEAR3(1)       --------------->AGL15            <------ZmHOX2a(2)            <---------DAG2 -------->DEAR3(1)      ----------------->AGL1           <---------ARR14(2)          <---------At4g35610 ------->ATERF1(1)      <-----------------AGL1     --------->ALFIN1                  <---------ZAT2 --->NtERF2           ------>NtERF2    --------->ANAC58  --------->ARR14(2)         <---------TOE1(2) -------ATERF1(1)     <---------ATERF1(1)    <----------DOF2   >>>>>>>>>>GATA-1  --------->ANAC58 ------>LBD16        ----------->HVH21 --------->ANAC46  <---------ARR14(3)      --------->ANAC58 <-- ------DEAR3(1)      --------->DEAR3(1)--------->TGA1a   --------->ARR11(3)   <---------ARR14(2)<---- -----LBD16        ------->GAMYB<------MYB46(1)  <-----------RAV1(1)    ----------->HVH21       <---- --At4g35610       ==============================MYC_MYB <---------ARR11(3)   --------->ARR14(2)<---- ->At4g35610    --------->MYB52(1)   <---------ALFIN1    --------->ARR14(3)<---------ANAC46    <-----   cggcgacgtcaggtggagcaacggcgacccagtttggtaacacgtcgctttatgtgggggatctcgatttcaatgtgacggactcgcagcttttcgatgc  16336900  Previous    Next  AGI:  At4g34110.1    Description:  PAB2 (POLY(A) BINDING PROTEIN 2); RNA binding. Identical to Polyadenylate-binding protein 2 (PAB2) [Arabidopsis Thaliana] (GB:P42731); similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71896.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro: Range:  from: 16336392    to: 16340102    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version