Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->ANAC58                            <---------HSFB2a(2)                        ------>ZmHOX2a(1)                       <---------REM1(1)                --------->YAB1                              <-----------RAV1(2)                     - ----->TEIL    <---------ATHB12                       ------>ZmHOX2a(1) --------->HSFB2a(2)         - -----ATHB12 --------->WOX13(1)<----------DOF2  --------->DAG2  --------->ALFIN1                    < -ATHB12   <---------ATHB12 --------->ANAC58   ---------->DOF2--------->At4g35610    ---------->DOF2-   gaatcttattcccatcaatcacagtcctacaagctttcaaaaccgaaggaaaagtcctgtaatcaggtgtaagtccagaactcaacataaagagactaaa  16292200                               ----------------->AGL2                                       ---------      <---------ICU4           ----------------->AGL1                                      <-------MYC3     <---------ATHB12       --------->ANAC58                                   <---------ARR14(2)   ------>MYB83             --------->ANAC58                                   --------->ARR14(2)   ------>MYB46(1)         --------->SPL7                                   <---------HSFB2a(2) <---------MYB59          <---------ALFIN1                                  --------->HSFB2a(2) <---------MYB111(1)     --------->LBD16                                   <---------LBD16 ------->MYC3 -------->ANAC46         <---------SPL7      --------->YAB1             <---------ZAT14   --------->TGA1a -------->ANAC55(2)     --------->ANAC46    --------->ICU4              --------->ZAT14   <---------TGA1a ---------ANAC55(2)    <---------LBD16      <---------ATHB12  <---------ARR14(2)  <---------YAB1 -------->ANAC55(1)  <-----------GT1      --------->GLK1(1)   --------->ARR14(2)--------->CCA1(2)   acacctaatcacttctgaagaatttcccgcacggccataaccagaaatcatcaaattccaagcgtatacatctctgttctggatatgatcaaacgtgtgc  16292300                                                                                              -------                                                                                             --------                                                                                           <---------ANAC46                                                                                           <---------ANAC58                                                                                           <---------ANAC58                                                                                          <-------TEIL                                                                                         --------->ALFIN1                                                                                       --------->O2                                                                                       --------->TGA1a                                                                                       <---------TGA1a                                                     <-------TEIL                      <---------ANAC58                                             --------->At4g35610                       <---------ANAC46                   ----------->GT1           <---------At4g35610                       <---------O2 >ALFIN1----------->RAV1(1)        <-----------GT1  --------->CCA1(2)                  <---------ANAC58   ctagccaatgcgacattgccaaggtaacaatagagattaacaagtttagcagagatacaaacattttggatttgtttggagacaacgagacgtgcgtgga  16292400                                  --------->DAG2                           --------->ARR11(3)                           --------->ARR14(2)                      <---------ZAT14                      <---------ZAT18                      --------->ZAT14                          <----------DOF2        --------->ATHB12   <---------ARR11(3)       --------->WOX13(1)                      ---------     <---------At4g35610   <---------ARR14(2)     <---------YAB1                         --------->AtLEC2 -->REM1(2)           --------->ZAT18--------->ALFIN1     <----------DOF2           ------->GAMYB ->ALFIN1 <---------WOX13(1)     ---------->DOF2 --------->TOE2(3)               ----------->RAV1(1)   gacatttggctgattgcaaattagtgcaatatctgaaaagtgtgtgaacatcatcaatctctttactttcattcccatttttccaacagtcttgcaaagc  16292500                                                                  <----------DOF2                                                                 <---------DAG2                                                              <---------ALFIN1                     --------->YAB1                          --------->MYB46(3)              --------->KAN4(2)                              --------->DEAR3(1)         ----------->GT1          <---------MYB52(1)         --------->RAP2.3(3)     <---------GLK1(2)         ------>ZmHOX2a(2)           --------->ZAT18     <---------ARR14(2)      <---------ARR14(2)            <---------ZAT18                         --    <---------At4g35610 <-----------GT1                    --------->PCF2   <------MYB83           <-    --------->At4g35610 --------->MYB52(1)             --------->DAG2       <------MYB46(1)       --- ->DOF2--------->At4g35610   --------->ARR14(2)       ---------->DOF2     <--------P       ----------   atttgcagatgctgaaaattctctaataactgatccgatagattgcaaaactcgtgtaaagcgcccacctttgcaggttggaatttgtctgggaagtgaa  16292600                                                                                                  <--                                                                                                  <--                                                                  <-----------TBP                 <--                                                                  <---------AHL20(2)--------->AtLEC2                                                                  --------->AHL20(2)--------->ANAC46                                                                <-----------TBP     --------->ANAC58       <<<<<<<<<SARD1                                         --------->AHL20(2)    --------->ANAC58 ------->HSFB2a(1)                                            <---------AHL20(2) <-------TEIL-------- --------HSFB2a(1)                                 --------->GLK1(2)     --------->TOE1(3)   <------- ------>DAG2                                       --------->ARR11(3)    --------->TOE2(3) <--------- ->GT1 <<<<<<<<<CBP60g <---------LBD16             <---------ARR11(3) <-----------GT1------------>CBF   aaggttccaaatttcatcaaattttcgagggaagaagagaaatactcagagaaaatctatacatttatatatatacctcaacatacatgcaattcaggtg  16292700                                                                                        <------MYB83                                                                                        ----------->GT1                                                                                       <---------AtMYB61                                                                                       --------->MYB46(2)                                                                                       --------->MYB111(2)                                                                                       <---------MYB46(3)                                                                                       <---------DEAR3(1)                                       <---------At4g35610                             --------->MYB55(2)                           --------->DAG2                                              --------->ALFIN1 -------ANAC58           ---------->DOF2    --------->HSFB2a(2)                        --------->MYB111(1) -------ANAC46         --------->AtMYB61    <---------HSFB2a(2)                       <---------MYB55(1) -------ANAC58      --------->ANAC46   --------->At4g35610                            <--------P ->At4g35610   <---------ARR14(2)   <---------MYB52(1)                    ----------->GT1           < --At4g35610   --------->ARR14(2)  <-------GAMYB                  ---------->DOF2    <---------MYB52(1) --RAV1(2)    --------->HSFB2a(1)<---------ANAC46     --------->CCA1(2)--------->CCA1(2)<------MYB46(1)   tcttgaaaactttcgacgattcccaccaaaaggtttcggttagcttagagaagtagagatgagagactaaaagagatggtataatcgggttggtgatttt  16292800                                              <----------DOF2                                              <---------DAG2                                            <---------At4g35610    ----------->GT1        <------MYB83                                            --------->At4g35610  <---------ANAC46         <------MYB46(1)                                         <------NtERF2        <---------RAP2.6(2)        --------->MYB59                                         <---------MYB52(1)   <---------ANAC46           <---------AtMYB61                                        <---------SPL7        <---------ANAC58         <---------MYB52(1)                     --------->LBD16    <---------RAP2.6(3)   <---------ANAC58     <---------LBD16                    --------->DEAR3(1)  <-----------HVH21    <---------LBD16     ------->TEIL                   <---------LBD16     --------->ATERF1(2) <---------WOX13(1)<---------WOX13(1)                  <------NtERF2        <---------ATERF1(2)<------------CBF  <------------CBF                --------->SPL7      ------>NtERF2         <---------ANAC58--------->AHL20(2)      <------------CBF<------NtERF2--------->DEAR3(1)     <---------ANAC58<---------AHL20(2)  --------->At5g28300<---------SPL7<---------DEAR3(1)    --------->ATHB12<---------AHL20(2) ----------->GT1--------->ZAT18    --------->MYB46(3)   <---------YAB1   --------->AHL20(2) ---------DEAR3(1)------>NtERF2   --------->ATERF1(1) <----------DOF2    <---------AHL20(1)   cgacggtgaattgaagagtccgccggagggtttagcgacggccgtcagcttttcttctttgattgcggtttgtaatttaattgaacccggtttggttttg  16292900                                                                            <------MYB46(1)                                                                            <------MYB83                                                                         <---------ANAC46                                                                         <---------ANAC58            ---------->DOF2                                              <---------ANAC58       <---------ANAC46                                                 <---------ZAT2     <---------ZAT18                                                  <--------P                    -     --------->SPL7                                                 <------MYB46(1)                <-     --------->ZAT14                                               --------->MYB59               <---    --------->ALFIN1                                               --------->MYB111(1)    --------->ARR11(3)   <---------SPL7                                   ---------->DOF2--------->MYB46(2)     <---------AHL20(1)  <---------ANAC58      <----------DOF2       <-----------------AGL1<------MYB83          --------->AHL20(1)  <---------ANAC58  --------->ZAT14  <---------YAB1<---------ATHB12--------->MYB111(2)   --------->AHL20(2)   taaaccgtgcggtctaaagcactaaactttaagacgagtaagattagagcccaataaggcccaaatagtttggtagcttggttaagcccaaatatatagc  16293000             <---------REM1(2)         ------>NtERF2                                                 ------>ZmHOX2a(2)        <----        --------->ANAC46                                  ----------->GT1      ---------->DOF2  ----- <---------MYB46(3)                             <---------ANAC46      --------->At4g35610       <---- -------->WRKY38(1)                             <---------ANAC58     --------->ARR11(3)         ----- --------MYB52(1)                               <---------ANAC58     <---------ARR11(3)     --------- ------MYB46(3)          <---------------AtSPL8<-----------------------TaNAC69(2)    <---------YAB1   cgttggctagacgcctagacggagttttttgtactgaccaatagagaatggcttgcaagagggaaacacatgatctgaaccaaaagtatgtttgtttgta  16293100  Previous    Next  AGI:  At4g33990.1    Description:  EMB2758 (EMBRYO DEFECTIVE 2758). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G11290.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49809.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABN08546.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64990.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 16290146    to: 16292617    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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