Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ----------->GT1                   --------->At4g35610     <---------TOE2(3)                  <---------At4g35610    ---------->DOF2                   <---------WRKY38(1) ----->TOE1(3)                        <---------WRKY12 ----->TOE2(3)                     --------->ANAC58                                         <-------- ----TOE2(3)                       --------->ANAC58                   <-----------GT1       <-------- ----TOE1(3)              --------->GLK1(1)              <------ZmHOX2a(1)                  <--------   gtaaactaaagtaaaaaatggaatgaagaaatctaacaagtcaactcaaacagagcggaggaacatatcaattttctatcccatggaaactattaagatt  16233800                  --------->DAG2       ------>ZmHOX2a(2)     --------->ARR11(3)                               <-----------GT1     --------->AGP1   <---------ZAT14              --------->ANAC55(1)     <---------ARR11(3)                          <---------ALFIN1     --------->ARR14(2)                         --------->ZAT14     <---------ARR14(2)                        --------->AtMYB61     --------->ARR14(3)                        <---------ALFIN1     <---------ARR14(3)                       --------->ANAC46     <-----------ARR10--------->ZAT14      --------->MYB46(3) -TOE1(3)        ---------->DOF2      --------->AtMYB61          --------->ANAC58 -YAB1<------ZmHOX2a(2)            --------->ANAC46--------->ANAC46                        --------->ANAC46 -TOE2(3) <---------AtLEC2   <----------DOF2--------->AtMYB61    --------->ANAC58          --------->ANAC55(2)   aatacaagatcttcatggataaagtgttctgctttacacacctaaaccaccacacttaactatccctaagcaaaatttcacatcaaaagtttcacataat  16233900                               <---------TOE1(2)                       <-----------ARR10                       <---------ARR11(3)            <-------TEIL       <---------TOE2(2)                    --------->ARR11(3)       <-----------RAV1(2)    ------>ZmHOX2a(1)                 ---------->DOF2      <------ZmHOX2a(2)--------->ARR11(3)                <---------ICU4      ===============================HOX2a_HOX2a   --------->YAB1   <---------ARR11(3)    <------ZmHOX2a(1)  --------->GLK1(2)--------->ARR11(3)    <---------YAB1  <---------TOE2(3)   --------->RVE1(1) <---------ARR11(3) <---------YAB1 --------->YAB1       --------->CCA1(1) --------->GLK1(2)--------->YAB1      <---------GLK1(1)      -   caataaggatcaggttcagataaaaaatcttcctatgttgaaaatctttcgaatgataaacatgataaaagttcttaggcaatcccaatttctctaaact  16234000                                                                                                <----             <---------AHL20(2)                                                             ---------           <---------------AGL15                                                     <------ZmHOX2a(1)         <---------AHL20(2)                     <---------------AtSPL8             <---------TOE1(2)<        <---------YAB1   ---------->DOF2       <---------ARR11(3)                  <---------TOE2(3)<   <---------GLK1(2) ---------->DOF2       ---------->DOF2            <------ZmHOX2a(1)     <-------- -------->YAB1  ---------->DOF2    --------->CCA1(2) ----------------->AGL1  <---------CCA1(2)  -----   aaacagaatttttattttaaaagaaaagaaagccgagagatgagaaaaagatagtaccataagcgagaaccaggaccgtatttcttaggatgagaattcc  16234100                           <---------ZAT14                           --------->ZAT14                           --------->At4g35610                           <---------At4g35610                  <---------WOX13(1)        ----------->HVH21xxxxxxxxxxxxxxxx>smallRNA(i)      <---------ANAC58--------->ETT(2)                                        <---------RAP2.3(1)      <---------ANAC58<---------ETT(2)       ---------->DOF2                 <---------RAP2.3(2) -----HSFB2a(2) --------->ATHB12         <---------At4g35610                 <---------DEAR3(1) >GLK1(1)       <---------ICU4           --------->At4g35610      --------->ANAC58 ---------TGA1a<---------ATHB12        --------->MYB46(3)         --------->ANAC58 ---------O2   --------->ICU4        --------->MYB52(1)        <----------ID1<---------RAP2.6(2) -GLK1(1)   ------------>ATHB5    --------->At4g35610    <------ZmHOX2a(2)  <---------LBD16 ---->HSFB2a(2)<---------YAB1     <---------At4g35610   --------->ARR11(3) --------->ALFIN1         <   agacgttggagtgacccatgattgtcgactgctctctgctaacagctcaaagcgattagatcaagaagacgaaatatgtgcggctcgagagagagagcta  16234200     ------>MYB83                                       <---------AHL20(2)   --------------->AGL15                              <-----------TBP   <---------MYB59                                  <-----------TBP  ----------------->AGL1                 ----------->TBP----------->TBP  ----------------->AG                  --------->AHL20(1) *TSS------>MYB46(1)  <---------AHL20(2)<---------AHL20(1)                   --------->ZAT18 -----------GT1 --------->TOE2(3)      --------->AHL20(2)             --------->ANAC46         ------   tataaccaaatttgtaaaccctagttatttgtggtcttcaaatatatatgggccttatatatatgggcctaaacacaagtagactagcccattctcaaca  16234300                                                                   <-----------GT1                                                                 <---------AHL20(2)                      <---------AHL20(2)    <---------ANAC58     --------->AHL20(2)                 ------>ZmHOX2a(1)          <---------ANAC58  ------>MYB83          <---------ARR11(3)   --------->TOE2(3)            <---------MYB46(2)       <---------ALFIN1--------->ATHB12    <---------ZAT2   --------->TOE2(3)                   -----       ----------->RAV1(1)   ------->TEIL ------>MYB46(1)   <---------MYB59                     -----     ------>NtERF2    <---------YAB1      ------>MYB83      <---------MYB111(1) <---------TOE1(2) --------->ZAT6 --------->TOE2(3)    <-----------GT1  <-----------GT1--------->ZAT6             ----- --->ZAT6<---------ALFIN1    <---------TOE1(3)  ---------->ID1------>MYB46(1)   <---------TOE2(2)   ctaactctgccacatcttccttatattattgaacgttatataccaagcttgtcatttttctacctaatttaacactaactcatacgtttaagcatgccta  16234400                    --------->MYB52(1)               --------->AHL20(2)               --------->YAB1     <---------DAG2          <------NtERF2           <----------DOF2 ---------->DOF2         <---------RAP2.6(3)     --------------->AGL15         ------>NtERF2           <---------------AGL15        <---------ANAC46        <-----------------AGL3        <---------ATERF1(2)     <-----------------AGL2 ->MYB83--------->RAP2.6(2)     ----------------->AGL1              --------->YAB1    <-----------HVH21 --->P  --------->ATERF1(2)     <-----------------AGL1           ------>ZmHOX2a(1)   <---------bZIP60(1) ->MYB46(1)   <---------ATHB12  <-----------------AG  ----------->HVH21              --------->bZIP60(1)   ccattttctgccgtcaataatataacagagcctgcccttttttggcacaaaccaaagtgacattttcctatcaaaatttgataaatgaggtcagagccaa  16234500                                --------->ANAC46                            --------->YAB1                                               <---------ARR11(3)                       <-------GAMYB                                        --------->GLK1(1)------>ZmHOX2a(1)                      <---------MYB46(3)                                 --------->HSFB2a(2)---------            --------->DAG2 <---------YAB1                      <-----------GT1           <---------ARR14(2)    ----------->GT1  <---------YAB1                           <-----------GT1            --------->ARR14(2)   aaaatgtagtagaaaaattggtgatggttatcatacacaatgagggattgaactctcaacttatttatcagccttctgaaatcaaactcaaaatcctcaa  16234600                                                                                    --------->ALFIN1                                                                                <---------LBD16                                                          ----------->GT1      --------->LBD16                                                      --------->DAG2           ------>ZmHOX2a(1)                                                     ---------->DOF2          <---------LBD16                                                  --------->At4g35610         <---------ANAC46                                                  <---------At4g35610      --------->ARR14(2)                                                  <------NtERF2            <---------ARR14(2)                                                --------->ZAT18        ===============HOX2a_HOX2a <--                                            ==================================HOX2a_HOX2a      <-----                                            <------ZmHOX2a(1) ---------->DOF2----------->RAV1(2)  ---                               <-----------ARR10<---------ZAT18        <------ZmHOX2a(2)  =========== >TOE2(3)                     <---------CCA1(2)--------->ATERF1(1)   <---------GLK1(1)    <----------DOF2   ttcagttactacatatattcgaaaacaaaatcaaatcttatcaacaggagtccgctaaagtggtaaaagagagatcagttcctggggagggcctttgagc  16234700  Previous    Next  AGI:  At4g33865.1    Description:  40S ribosomal protein S29 (RPS29C). Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29 (RPS29A) [Arabidopsis thaliana] (TAIR:AT3G43980.1); similar to Os11g0634500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068325.1); similar to unknown [Populus trichocarpa] (GB:ABK93131.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) Range:  from: 16233214    to: 16234201    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g33870.1    Description:  peroxidase, putative. similar to peroxidase [Arabidopsis thaliana] (TAIR:AT2G41480.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45900.1); contains InterPro domain Plant peroxidase; (InterPro:IPR000823); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) Range:  from: 16234675    to: 16236497    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version