Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ALFIN1                                                       --------->LBD16                                                --------->ARR14(2)                <----------DOF2                       --------->ANAC58         --------->GLK1(1)        <---------ZAT2          <---------YAB1    <------ZmHOX2a(2)   <---------GLK1(1)        --------->At4g35610 -------->ANAC46       --------->ANAC46    --------->At4g35610           <---------At4g35610 ----ARR14(2)          --------->ANAC58    <---------At4g35610           --------->ZAT2 --->ARR14(2) --------->ALFIN1        <---------LBD16<---------LBD16  <------ZmHOX2a(1) ----------->GT1   acacgaagacttacgagtgctggacacgagatcgaacttctctggagcagaattctccggtggagaagaagaggaagctgaagactttgaaggtgaaatg  16116100                                              --------->ARR11(3)                                              --------->GLK1(2)                                              <---------ARR11(3)                                              <---------ARR14(2)                                              --------->ARR14(2)                                        --------->ANAC58                     <------ZmHOX2a(1)  --------->ANAC58             --------->ZAT2           --------->MYB52(1)       <---------GLK1(1)             <---------ZAT2    <---------GLK1(1)               --------->GLK1(1)    <----------ID1             <---------At4g35610     <------ZmHOX2a(1)     --------->LBD16   <---------------------WRI1             --------->At4g35610  <---------LBD16         <---------LBD16    --------->At5g28300        <------------AtMYB77   --------->GLK1(1)         <---------LBD16  ------->TEIL         <-----      --------->MYB52(1)   --------->YAB1  <---------GLK1(2)--------->LBD16 ----------->GT1    ------   gaattagccaactgtagctgagaggacaatcggaactcaggaacggaatatctgattccaccgggaaatctccatgaacggtgaagagaacaagggaaga  16116200         ==================================HOX2a_HOX2a         <------ZmHOX2a(1)       --------->ALFIN1  ---------->DOF2                --------->ATHB12                         <-----------HVH21 ----At4g35610                  <---------ATHB12                   ---------->DOF2 --->At4g35610       ---------->DOF2------>ZmHOX2a(2)        ----------->GT1   tgagaaaaggaggagcttgaagagaaagaatcaaatgatcggccataacttaaacattgaagtctgtaacaaagagtgtcacagaaatggtttagagtag  16116300                     ----------->GT1                     <---------bZIP60(1)                     <---------ANAC58                     --------->bZIP60(1)                     ===========================MYC_MYB                     <---------ANAC58                     --------->ANAC55(2)                     <---------ANAC55(2)                     <---------TGA1a                     <---------O2                     --------->O2                    ----------->STF1                  ----------->TGA1                  ----------->HVH21                <---------ANAC58                <---------ANAC58                                          <---------RVE1(1)           --------->ATHB12                                              <---------ARR11(3)           <---------ICU4                                                --------->ARR11(3)          <---------YAB1          <---------MYB46(3)              <----------DOF2          --------->ICU4        <---------MYB52(1)                <-----------HVH21       <---------MYB52(1)        --------->YAB1      --------->MYB52(1)     *TSS    --------->ALFIN1    <-----------RAV1(1)       <---------YAB1<---------bZIP60(2)------->GAMYB  --------->At4g35610<---------CCA1(1)        --   acgaagaagatgataattgggtgacgttacaaccggtggtaaccctctgtttctatcagatgtgttcgcttcacagatattttgtggctaccgttttttt  16116400              <---------AHL20(2)            ----------->TBP   <------------CBF      <----------DOF2  --------->ATHB51    <---------ARR11(3)                                                --------->ARR11(3)  <---------ICU4      --------->ARR11(3)                                            ---------->DOF2  --------->ATHB12    <---------ARR11(1)                                   --------->YAB1<------ZmHOX2a(2) <---------YAB1      <---------CCA1(2)                               <-----------HVH21  <---------ARR11(3) --------->ICU4    --------->YAB1                        --------->At4g35610  <---------GLK1(1)  <--- ------->YAB1--------->YAB1   <-----------GT1     *TSS   ------>NtERF2  --------->WOX13(1)      <----   ttcataattgggctataaaaatcatatctttttgactcttctcttctctatccattctctgccgaactagtcgtcaatcgaaatcccaaagatcagcgat  16116500                                                                 ------>NtERF2                                                                 --------->ORA47(1)                                                                 <---------SPL7                                                      --------->ANAC58                                                      --------->ANAC58                                                   <---------MYB52(1)                                                  <-----------HVH21                                                  <---------RAP2.6(3)                                                  <-----------TGA1                                               ------>MYB46(1)   <-----------HVH21                                               -------->P    --------->ANAC46      <---------REM1(2)   --------->ANAC58     ------>MYB83 ------>ZmHOX2a(1)                   <---- ------MYB46(3)           --------->ANAC58    <---------ALFIN1  --------->DEAR3(1)----------->RAV1(2) -----AtMYB61        ------>ZmHOX2a(1)   ------>ZmHOX2a(1) <---------ALFIN1<----------DOF2     <-----   ggtgactctaaacgcttcttctcctctcacgaccaagtcgttcctcccctaccgtcacgctcctcgccgtccaatctctttctcccctgtcttcgccgtt  16116600                            --------->YAB1                           <---------ATHB12                         --------->WOX13(1)                     -------->P                --------->GLK1(1)                  xxxxxxxxxxxxxxxxx>smallRNA(se3)             --------->ANAC46       --------->At4g35610                                       <------     ----------->HVH21 --------->MYB46(3) <-------GAMYB                                     ---------   ----------->RAV1(2)--------->ANAC46   ----------->GT1                                 --------->MYB52(1) ---TEIL     --------->ANAC58       <---------At4g35610                         <----------DOF2 ----MYB52(1)--------->ANAC58 --------->At4g35610  <---------ANAC46        ---------->DOF2<---------LBD16   cattcgactgaccccaagaaatctacccaatcagcctccgcttcggttaaatggagtctagagagttggaagtcgaagaaagctttgcaattgccggatt  16116700                                                                                                  ---                                                                                                 ----                        --------->ARR14(2)                                                      <----                <---------YAB1                                                                 <-----   xxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                    --------->ARR14(2) ------>ZmHOX2a(1)      <---------ARR14(2)       ------>ZmHOX2a(1)                     <---------ARR14(2) ---GLK1(2) --------->ARR11(3)             <----------DOF2                            <------ZmHOX2a(1) >LBD16    <------ZmHOX2a(1)        <----------DOF2 ------>ZmHOX2a(1)       <------ZmHOX2a(1)  <-----   atcctgatcagaaggatgttgattcggttctacagacgctttcttcttttcctcctatagttttcgctggtgaggctaggaaactagaggataagcttgg  16116800                                                                  --------->ZAT6     <---------ARR14(2)<---------YAB1                            <---------TOE2(3) ------->DOF2  --------->ANAC58            --------->At4g35610   <---------TOE1(3)          <-------- ----->WRKY18(1)   <----------DOF2         <---------At4g35610  <-----------GT1             <-------- -------HVH21  --------->ANAC58      <---------MYB46(3) --------->ANAC58                <----------DOF2 -MYB46(1)  --------->WRKY18(1)     <---------YAB1      --------->ANAC46            <---------ALFIN1 -MYB83    <-----------HVH21     --------->ALFIN1       --------->ANAC58    --------->TOE2(3)      <<   tcaagcggctatgggtcaagcctttatgcttcaaggtggtgattgtgctgagagtttcaaggaatttaacgctaataacattagagacacctttagggtt  16116900                               <------NtERF2                               ------------>AtMYB77                              ------>NtERF2                     <---------TOE1(2)-------->P           --------->ALFIN1<------MYB83         <---------ANAC58  <---------ANAC58     <---------At4g35610   <------MYB46(1)                            <---------ARR11(3)     --------->At4g35610   <---------ANAC58                           --------->ARR11(3)   <-----------RAV1(2)    <---------DEAR3(1)                    <---------LBD16 -TOE2(3)<---------ANAC46 --------->MYB55(2)               <----------DOF2             ------->TEIL -TOE1(3)<---------ANAC58 --------->MYB46(2)           <---------GLK1(2)  <-----------GT1 <<<<<<<TBF1<-------GAMYB <---------MYB46(3)  <---------YAB1   ----------->RAV1(2)  <---------YAB1<--   cttcttcagatgggtgttgttctcatgttcggtggccagttaccagttatcaaggtcgattctttacctggagatttttctgtgtgatgaatctctagtt  16117000  Previous    Next  AGI:  At4g33500.1    Description:  protein phosphatase 2C-related / PP2C-related. similar to catalytic [Arabidopsis thaliana] (TAIR:AT4G16580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16183.1); contains InterPro domain Protein phosphatase 2C-related; (InterPro:IPR001932); contains InterPro domain Protein phosphatase 2C, N-terminal (InterPro:IPR014045) Range:  from: 16112661    to: 16116351    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g33510.1    Description:  DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE); 3-deoxy-7-phosphoheptulonate synthase. Identical to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (DHS2) [Arabidopsis Thaliana] (GB:Q00218;GB:Q9SZC8); similar to DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G39980.1); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G22410.1); similar to unknown [Populus trichocarpa] (GB:ABK94974.1); s Range:  from: 16116450    to: 16118800    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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