Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             ----------                                                                                          <----------                                                                                       ----------->RAV1(2)                                                                                       <---------At4g35610                                                                                       --------->At4g35610                                                   <---------MYB52(1) --------->YAB1   <---------ZAT2                  <---------YAB1               <----------DOF2       ---------->DOF2   --------->ZAT2               <---------MYB52(1)              --------------------->WRI1   <---------MYB52(1) -->AtMYB61--------------------->WRI1     <---------At4g35610--------->ANAC46   <---------GLK1(2)   tcgttttccacatctccgttctcatcgtcgtcttcatcatcttcatctcctttgttagtcttgacgaaacaataagcagtcagtttctcagctgtgaccc  16080100                                         <---------At4g35610                                         --------->ZAT2                                  --------->DAG2                         <---------WRKY12                                 ---------->DOF2                       <-----------HVH21                             <---------ANAC46                         <---------ANAC46          <----    <----------DOF2         <---------At4g35610                       <---------ANAC58          <----    --------------------->WRI1--------->LBD16                         <---------ANAC58   <----------DOF2   <---------ANAC58     <---------REM1(1)<---------ZAT2            <---------WOX13(1)    <-----------HVH21   <---------ANAC58    <---------TOE2(3) --------->At4g35610     --------->ATHB12      --------->At4g35610 ->HVH21    --------->ALFIN1--------->At4g35610               <---------At4g35610      <---------At4g35610 -HVH21     <---------ZAT6  <---------LBD16          --------->REM1(2)----------------->AGL1    <----   atttggctttgggagtgttgccattgatgtagcggaaaagccgagctgagttctgagtagacggggctgattgcgtcaatgggtatttcagcttcagggc  16080200                                                                                    <-----------ARR10                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC55(2)                                                                               ------>MYB46(1)                                                                               ------>MYB83                                                                             <---------MYB59                                                                             <---------MYB111(1)                                                                        --------->CCA1(2)                                                           --------->AtMYB61 <---------MYB52(2)                                                           <---------ALFIN1  <---------MYB46(2)                                                   --------->ATERF1(1) <---------ARR14(2)                                                  <---------ATERF1(1)  --------->ARR14(2)                                                <------NtERF2          <---------ARR11(3)                                       --------->CCA1(2)  --------->MYB46(3)--------->ANAC46---------                              <---------REM1(1)<---------ATERF1(1) <------ZmHOX2a(1)------->TEIL                              <---------YAB1   --------->LBD16 --------->LBD16 --------->MYB52(1)         --------->TOE2(3) --------->ICU4      <------NtERF2 <---------LBD16--------->ANAC55(2)     - -----ANAC46               <---------YAB1    <---------LBD16--------->MYB52(1)--------->MYB55(1)<---- -----ANAC58       <------NtERF2      --------->ARR11(3)------>NtERF2  --------->ARR11(3)  --------->ANAC46 -----ANAC58     <---------DEAR3(1)<------ZmHOX2a(1)   --------->DEAR3(1) <-----------GT1 <---------LBD16   ttggagttttgcctcaacgtcgtcgagtgatgatgaaggagatttaggccggagacgacgaccaccggaggaagatatacctaacgtatcatcccgcgag  16080300                                                                                     ------>ZmHOX2a(2)                                                                                   <---------AGP1                                                                                   --------->ARR14(3)                                                                                   <---------ARR14(2)                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                                                                                   <---------ARR14(3)                                                                                   --------->ARR14(2)                                                                                   --------->AGP1                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                            --------->GLK1(1)                                                                           <---------AGP1 <---------YAB1                                                                           --------->ARR11(3)                                                                           <---------ARR11(3)                                                                           <---------ARR14(2)                                                                           --------->ARR14(2)                                                                     ==============HOX2a_HOX2a     --                                                                     <------ZmHOX2a(1)  <---------ICU4                                                                     =======================HOX2a_HOX2a                                                                     ======================HOX2a_HOX2a >LBD16                                                              ===============HOX2a_HOX2a<----- ----->ZmHOX2a(1)    ------>ZmHOX2a(1)                <-------TEIL <---------TOE1(2)<------ZmHOX2a(2) -----ARR14(2) ------>ZmHOX2a(1)           <---------GLK1(2)   <---------At4g35610<---------CCA1(2)<-   tcctgaaacgtctcttcctcttcctctccctctcttccttcttcatattcttcatattcatcttcatcggaggaacagatctctagatcttcatgactgt  16080400                      --------->LBD16                      <---------HSFB2a(2)                      ------>ZmHOX2a(1)                      --------->HSFB2a(2)                     <-----------------AGL2                     <---------LBD16                  --------->ARR14(2)                          --------->KAN4(1)                --------->HSFC1(2)                           <---------KAN4(2)         <---------CCA1(2)                         ------->GAMYB ------->At4g35610--------->GLK1(2)              --------->RAP2.6(3)        --------->ALFIN1 ------HVH21    --------->HSFB2a(1)--------->ARR11(3)    --------->YAB1   --------->ZAT2 --------At4g35610<---------ARR14(2)            --------->MYB52(1)        <---------ZAT2 >>>>>>>>>TBF1   gagatgctcccatatcgaagaatcctggaaatgggaagagctagagagaataacggcaatgagattattcaaacgaaggtgggaagttgaagaagaagag  16080500                                                                                  ------->GAMYB     <                                                     ------>ZmHOX2a(1)           <---------LBD16-----                                              ------->MYC3                     --------->MYB52(1)----                                              <-------MYC2                <---------TOE2(3)  --------        --------->DAG2                 ---------->DOF2                <------------CBF       <-------       ---------->DOF2       <---------TOE2(3)<-------MYC3   --------------------->WRI1      --------    ----------->GT1     *TSS <---------TOE1(3)------->MYC2   <----------DOF2   <-----------GT1-------   agaagagcgtaaagttcgaattttgaaaattagggtttttcaaaagcatgtgttcctgttcccctttggacagattgaagttaaccggctatagcccgta  16080600      ------>ZmHOX2a(2)     <------ZmHOX2a(2)    <---------AGP1    <---------ARR11(3)    --------->GLK1(2)    --------->ARR14(2)                            ------>ZmHOX2a(2)    <---------ARR14(2)                           <------ZmHOX2a(2)   <---------ARR14(1)                  <---------MYB52(1)   <---------CCA1(2)                  --------->LBD16  --------->LBD16                    --------->ANAC58 ---------LBD16                      ----------->GT1 ---->ARR14(2)             --------->LBD16      --------->ARR14(2)     --------->ANAC46         ----- ------>DOF2             --------->RAP2.6(3)    <---------AGP1       --------->DEAR3(2)    <---------AHL20(2) ->ANAC58                <---------LBD16        <---------ARR14(2)  --------->MYB52(1)   --------->ICU4 --ANAC55(2)            --------->MYB52(1)     <---------CCA1(2)    ------->TEIL  <-------GAMYB<----- ->ANAC58       <----------DOF2      --------->ANAC58 --------------->AtSPL8      --------->At4g35610 -->LBD16 --------------->AtSPL8     <---------ANAC55(2)    <----------DOF2       <---------At4g35610   aatgcggatctgtaagtactttcatataccggctatagcccgtaaattcggatctgtaagtactttcatgtaccggctacagccagttgaaatttttatg  16080700                                                       <-----------RAV1(1)                                                    <---------MYB52(1)      <-------TEIL                                 <-------GAMYB           --------->At5g28300   <---------MYB46(3)                       <---------------AtSPL3<------MYB46(1)                 --- ---->ATHB12                   --------->PCF5 <---------SPL7<---------YAB1----------->GT1    <------- ----YAB1--------->AtLEC2   --------->ALFIN1<---------------AtSPL8<------MYB83              ---------   atttgtggttcattcaaattcaaattagaagtggtccgatttttaagaagtacggttatgttgtgatttggtgatgctgtaacttcgtcttaaatatgtt  16080800                                                                                          <---------MYB52(1)                                                                                         ============                                               --------->At5g28300   --------->AHL20(2)  ------>ZmHOX2a(1)                                              ----------->GT1   ------------>CBF         <----------DOF2                                      <---------YAB1--------->AHL20(1)              <------MYB46(1)         --------->ANAC58            <---------TOE2(3)  --------->AHL20(2)         <---------AtMYB61         --------->ANAC58           <-----------GT1 <---------AHL20(1)             --------->MYB59 ------->ID1                   <---------AHL20(2)   --------->AHL20(2)           <---------MYB52(1) ----RAV1(1)        <---------ARR11(3)--------->ANAC46  <---------AHL20(2)     *TSS<---------MYB46(3) >ARR11(3)     ------------>CBF--------->AHL20(2)   <---------AHL20(2)<---------YAB1<------MYB83 <---   gtcgttttgactcgcattacaatatgttatcgtttaatttacgatacactgtaattaattaatagtttcaatattatagaaacgtttggtcctttagtcg  16080900                                                                                                    -                          --------->TGA1a                                                         ---                          --------->ANAC46                                                        <--                      --------->MYB46(3)                                                          ---                      ------>ZmHOX2a(2)                                                           <--                     <------ZmHOX2a(2)                                                            <--                    <---------ARR14(2)                                                            ---                    --------->ARR14(2)                      --------->ARR14(2)                    <--                   <------ZmHOX2a(1)                        <---------ARR14(2)                    ===                   ==================================HOX2a_HOX2a                                  ---                   ===================================HOX2a_HOX2a                                 ===            ----------->RAV1(1)                            <---------MYB52(1)              <---------GLK1(1)           --------->ANAC46<-----------HVH21          <-----------GT1                   <---------TOE2(3)       --------->GLK1(1)  <---------O2         ------>ZmHOX2a(2)              ------>ZmHOX2a(1)   ---       <---------GLK1(1)  --------->O2        <------ZmHOX2a(2)   --------->AtMYB61     <---------TOE1(3)       --------->CCA1(2)  <---------TGA1a    <---------ARR11(3)   <---------ALFIN1   <---------MYB52(1) ===================================bZIP_DOF <---------ARR14(2)  --------->MYB46(3)<---------MYB46(3) ---NtERF2 ----------->HVH21                 --------->ARR14(2)--------->ANAC46  --------->LBD16<----   gagagactgatatgcgacagaggatccaacgtcgcgactgaaacctagatcccaattctccgtttccaccactgtctctcctccgtcgttagggtttctc  16081000  Previous    Next  AGI:  At4g33400.1    Description:  dem protein-related / defective embryo and meristems protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19240.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82150.1); similar to dem [Solanum lycopersicum] (GB:CAA73973.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61339.1); contains InterPro domain Vacuolar import and degradation, Vid27-related (InterPro:IPR013863); contains InterPro domain WD40 repeat-like (InterPro:IPR011046) Range:  from: 16077920    to: 16080524    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g33410.1    Description:  signal peptide peptidase family protein. similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43070.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83442.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, signal peptide peptidase; (InterPro:IPR007369) Range:  from: 16080879    to: 16083240    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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