Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <----------DOF2                                                    <---------DAG2           --------->ZAT14                                              <---------ICU4                 --------->ZAT18                                          <-------TEIL             --------->SPL7                                          --------->ZAT18          <---------LBD16                                       <---------ANAC46           --------->MYB52(1)          -------                --------->ARR11(3)     <---------ANAC58          <---------SPL7  <---------LBD16       ----------->RAV1(1)             <---------ANAC58 <---------YAB1       <---------ZAT18  <------ >NtERF2    <------ZmHOX2a(1)    <------ZmHOX2a(1) --------->TOE2(3) --------->LBD16         <-------   cagacaaaacaacaggaagaccctgaacttggataggagtagggtgcattattcctttatccttgagcatacggagaagtggactcggaaatttcatatc  16071000                                       ----------->GT1                                    <---------DOF5.7(2)                        --------->ARR11(3)                                           --------->ARR11(3)                        <---------ARR11(3)                                           <---------ARR11(3)                        <---------ARR14(2)                                       ----------->HVH21                        --------->ARR14(2)                                      <---------WOX13(1)<--                        --------->ARR14(3)                                     <-------GAMYB      <--                        <---------ARR14(3)                                    <------MYB83     <-----         --------->ATHB12         <---------MYB52(1)                          <------MYB46(1)  <-----        <---------YAB1  <-----------ARR10                     <---------ATHB12<---------MYB46(3)  --- -->ARR14(2)        <------ZmHOX2a(1) --------->ZAT6       ------>ZmHOX2a(1) <---------AtMYB61 <----- ---ARR14(2)     <------ZmHOX2a(1)--------->DOF5.7(2) <---------ANAC58       --------->MYB59------>ZmHOX2a(1) --CCA1(2) <---------WOX13(1) <---------At5g28300     <---------ANAC58     <---------MYB52(1)--------   catgaagtttttgattggaggaggaatatcttcaccgttaactgtaatatgccattgcttcctaatcaaatccatctgtttggttgacatcttcctaacg  16071100                                                                 ------->GAMYB        --------->GLK1(1)                                       --------->MYB46(3)  --------->ALFIN1                                             ------>MYB83 -------ZAT14                                                  ------>MYB46(1) -----TEIL                                                    --------->MYB52(1) ----ANAC58                                                   ----------->RAV1(1) ----ANAC46                                                  --------->MYB46(3) ------>ZAT14                                                --------->AtMYB61         <---------At4g35610 ----ANAC58                                                 --------->MYB46(3)         --------->At4g35610 ->MYB52(1)                                               <-----------GT1          <-----------HVH21<   tgcagagggggtttccaccatgttgagagaggctctgtataagtgatacctctggctaattcaccaacagacataagcttcttcttgtcagataaatgct  16071200                                                                         --------------->AGL15                                                                         <---------------AGL15                                                                        <---------ANAC58                                                               --------->At4g35610             <-----                                                          <---------ANAC58                 <XXXXXXXXX                                                          <---------ANAC58           <---------ZAT2                      <---------ICU4                      <---------ANAC46          --------->ANAC58                      --------->MYB52(1)              <-----------HVH21 <---------ANAC46 <------MYB83                     <---------ATHB51                <-----------RAV1(1)<---------ANAC58 <------MYB46(1)              ----------->GT1<------NtERF2        <-------TEIL <---------ZAT2   --------->ANAC58 <---------ICU4      <---------AHL20(2)       <---------TOE2(3)<---------At4g35610  --------->ANAC58 ---------ATHB12   --------->YAB1             <---------TOE1(3)--------->ZAT2   --------->ANAC58   ccatcatccccttctcttgtaaaataatggcctcggtagcactgacttaaggtacatgtcgcttgagctgagttgcttgaacaagtaagctaggtttagc  16071300                                                                                   --------->bZIP60(2)                                                                                   --------->O2                                    <---------DAG2                                 <---------ANAC55(2)                        --------->ARR14(2)                                         --------->ANAC46                        <---------ARR11(3)     --------->At4g35610                 --------->ANAC55(1)               <---------ANAC58  --------->DEAR3(1)                                --------->ANAC55(2)            <-----------GT1      <---------ALFIN1                                  --------->ANAC58          <----------DOF2<-------TEIL<----------DOF2                               --------->ANAC58          <---------DAG2<---------ARR14(2)     <---------At4g35610            --------->ANAC46        --------->At4g35610      --------->AtMYB61              ------>ZmHOX2a(1)<---------ALFIN1      <---------ZAT18  <---------GLK1(2)       ----------->RAV1(2)   --------->HSFB2a(2) ------->GAMYB <---------ZAT14     <---------TOE1(2)       --------->REM1(1)<-----------------AGL1     --------->YAB1 ----At4g35610 <---------ANAC58 --------->MYB46(3)--------->ZAT18    <---------HSFB2a(2)--------->MYB46(3) XXXXXXXXXXXXMIR840 <-----------RAV1(2)    <----------DOF2--------->ANAC46 --------->KAN4(2)   ttcttcagtgagctttaccttgccaggttcttccaccacctttcgcttcatctgcgctagacgctcctctactggaacatactccacgtaaccatcatct  16071400                                                                ------>ZmHOX2a(2)                                                               <---------GLK1(1)                                                               <------ZmHOX2a(2)                                                               --------->GLK1(1)                                                              <-----------ARR10                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                              <---------ARR11(3)                                                              --------->ARR11(3)                                                              <---------ARR14(3)       --------->ANAC58                           <----------DOF2                <---------At4g35610          --------->ANAC46                           <---------DAG2         --------->TOE1(3)                 <------ZmHOX2a(2)                        ------>NtERF2     <---------ARR14(2)  <---------AGP1       <---------ARR11(3)                    --------->ANAC58      --------->ARR14(2) <---------CCA1(2)     --------->ARR11(3)             <---------ARR14(2)       <------ZmHOX2a(2)   --------->At4g35610--------->ANAC58      --             --------->ARR14(2)  ---------->DOF2  --------->TOE2(3)          --------->ANAC58    ----    <---------ATHB12--------->ANAC46 <---------ARR11(3) --------->YAB1       --------->ANAC46   -----    <---------YAB1  --------->ANAC58 --------->ARR11(3)<---------ATHB12 <----------DOF2--------->ANAC58   acttccatgattcaaaatccactcgccaactttttcaaagatcgaatccaaaccctaatcagcagatctctcgactttcaaggaagatcacgcagataga  16071500                                      --------->ICU4                                      <---------HSFB2a(1)        --------->ANAC46              --------->KAN4(1)        --------->ANAC58             <---------KAN4(2)        --------->ANAC58        <------MYB46(1)      <---------ANAC46       <---------LBD16         --------->ALFIN1    <---------ANAC46                --------->ANAC58     <---------REM1(2)        <--------P         <---------ZAT14       ---------->DOF2   ----------->HVH21          --------->ALFIN1   <-------GAMYB      --------->ANAC58   --------->At1g77200       <-------GAMYB      --------->ALFIN1    --------->ANAC46  --------->CCA1(2)   --------->DREB2C(2)    --------->LBD16     --------->ALFIN1      --------->ANAC58 <----------ID1 --------->HVH21         <---------LBD16  ------>ZmHOX2a(2)     --------->YAB1     --------->ANAC58 ----->CCA1(2)          <---------LBD16--------->ATHB12        <---------YAB1    ---------->DOF2 ---->ARR11(1)   ----------->GT1<------MYB83<---------ANAC46<---------YAB1  ---------->DOF2   tatgaccgacacggagttttggttaaaccggggttggggaatgatcgggtgtgttgtgttttctgattataagcaaagaaaagaaaagctacaagaagag  16071600                                                                     <---------AHL20(2)                                                              <-----------GT1                                       --------->DAG2     <---------AHL20(2)                                     ---------->DOF2      --------->AHL20(2)          ----------->GT1                <---------TOE1(2)<------MYB46(1)         --------->AHL20(2)          <---------WOX13(1)                <---------TOE2(2)<------MYB83            <---------AHL20(1)  <---------AHL20(1)      --------->YAB1            --------->MYB59          --------->AHL20(1)  --------->ARR11(3) ------------>CBF            --------->ZAT2              <---------AHL20(2) <---------CCA1(2)      --   agtctcaattagaattcgtatgttgacaaggagctaggtaaaaggtagtttttcaaaaatttaatttccatttttttcatatattggattgaaaaatggc  16071700              <------ZmHOX2a(1)             <---------AHL20(2)            <---------TOE1(2)     --------->ARR11(3)            <---------TOE2(2)  <---------TOE2(3)                                                -----          --------->TOE1(2)   ---------->DOF2 --------->ANAC55(2)    <----------ID1            ------         --------->YAB1      <---------AHL20(2)            --------->ANAC58               --------->ZAT14         --------->ATHB12    --------->AHL20(2)    <---------YAB1--------->YAB1     --------->STY1(2)       ------->TEIL    <---------ALFIN1     <-----------GT1--------->ANAC58       <---------CCA1(2) --------->HVH21    <-----------GT1<---------REM1(1)<---------ICU4 --------->ZAT6 ------>ZmHOX2a(1)--   aatgacatgaatcataggattatcaccacatttaaagatgtagtatttacataacaattgcaagaaataatactacaaaacttcctatctagtatagacg  16071800                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               <-----                                                                                               *TSS                                                                                               <-----                                               <------MYB83                                    ------                                               <------MYB46(1)                      <---------AHL20(2)                                             <---------WOX13(1)                     --------->AHL20(2)                                      --------->YAB1                               <---------AHL20(2)                                     --------->ICU4                             <---------AHL20(1)                                   <------------CBF                             --------->AHL20(2)                                --------->ANAC58                                <---------AHL20(2)                                --------->ANAC55(2)                             --------->AHL20(1)          <-------TEIL          --------->ANAC55(1)   <---------ARR11(3)       <---------AHL20(2)  <-  ---------->DOF2        <-----------GT1    <------------CBF          <---------ANAC46       -------- ---->At4g35610--------->ANAC46 --------->ANAC58      --------->ARR11(3)       --------->AHL20(2)  -- --->ANAC46 --------->TOE2(2)   --------->ANAC46     <---------CCA1(2)----------->GT1     ----------- ---->NtERF2--------->TOE1(2) <---------ALFIN1 ----------->GT1    <-----------HVH21--------->AHL20(2)   ctgccaaagaaatacatacgacgtttttatccacacgcattgatgagattggtatatatctctgtctctgtcgagtgaaaaataaattaatagagtaata  16071900  Previous    Next  AGI:  At4g33370.1    Description:  DEAD-box protein abstrakt, putative. Identical to Putative DEAD-box ATP-dependent RNA helicase 43 (RH43) [Arabidopsis Thaliana] (GB:Q9SZB4); similar to DEAD-box protein abstrakt, putative [Arabidopsis thaliana] (TAIR:AT5G51280.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78736.1); similar to putative DEAD-box protein abstrakt [Trifolium pratense] (GB:BAE71218.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66781.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfami Range:  from: 16069672    to: 16071408    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g33380.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04555.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61323.1) Range:  from: 16071895    to: 16074876    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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