Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------->bZIP60(1)                                                    ----------->RAV1(1)   ----------->RAV1(2)                                                        <----------ID1   <---------At4g35610                                    --------->AHL20(2)--------->ANAC58  --------->MYB52(1)                                --------->LBD16         --------->ANAC58 ------>ANAC58                                 ---------->CDC5              ------------------------>ANAC81 ------>ANAC58                                ------>ZmHOX2a(1)             --------->ANAC46 -----GT1                                    --------->TOE2(3)         ---------->DOF2   tagccaactgatgccattcggaagttttgatcaaactagactcaattcctcagcccgagataaattttgacaaaaaagaagcaacaaaactaagaacaaa  15880900                                                                                               ------                                                                                              -------                                                                                              <------                                                                                            ---------                                                                                 --------->CCA1(2)                                                                                 --------->ARR14(1)                                                                                --------->ARR11(1)              ----------->GT1                          ----------->ARR10    --------->O2  --------->LBD16             --------->ANAC58                       <---------ANAC46      ----------->RAV1(1) <------             --------->ANAC58             <---------ANAC58     --------->HSFB2a(2) --------->ANAC58           --------->MYB52(1)             <---------ANAC58     <---------HSFB2a(2) --------->ANAC58        ---------->DOF2        <---------ICU4      <------NtERF2       --------->ANAC58  --------->HSFB2a(2)     ------->GAMYB            <---------ATHB12   <---------DEAR3(1)    --------->ANAC58  <---------HSFB2a(2)   ttatcaacagaaaagacggaaaataagtcgaaatcaataccatagcttgaggctgcgaagagtttcgagacgaaggccacatgatacgcttctggagatt  15881000                                                                                              <------                                                                                              <------                                                                                           <---------DOF5.7(2)       <------NtERF2                                                                     --------->DOF5.7(2)      ------>NtERF2                                                                     --------->At5g28300      ----------->RAV1(1)                                                              --------->TOE2(3)     ----------->HVH21                                                                 --------->TOE1(3)     <----------ID1                                                                    ------->GAMYB --->GLK1(2)                                                                          <------------AtMYB77 -->ARR14(2)                                                                        <-----------GT1 ---GLK1(2)      ---------->DOF2                               ----------->GT1--------->TOE2(3) <---- -->ARR10    <------ZmHOX2a(1)                       --------->YAB1      --------->At4g35610 -------- ---ARR14(2) <----------ID1 <----------DOF2 *TSS    <---------YAB1  --------->CCA1(2)<---------At5g28300   ctccaaggcgacagaggaacaaagctaagcctttaaaatcgaatgcccatgagtatgatgaagaagggagataagagcagccttagtaaccgtaaacgtc  15881100        --------->ARR11(3)        <---------ARR11(3)                              --------->LBD16       <---------CCA1(2)                               <---------HSFC1(1) --------->ALFIN1                                      <---------HSFB2a(2) -----HVH21                                      <-------TEIL -----TGA1                        <---------ANAC46     --------->HSFB2a(2)      ---------->DOF2 -------RAV1(2)       --------->MYB52(1)         ------->TEIL          ------------>CBF <-----------GT1 ->ANAC46    <---------YAB1 ------>NtERF2 <----------DOF2       <-------TEIL--------->YAB1--------->ZAT6   agggtgttcatatctctgattacaaaacgacgcgttgtttggggcttaatgtacattctggaaaaatacatggtccaattagaaaagttttaacagtata  15881200                                                        <------NtERF2                                                      <---------O2                                                      --------->bZIP60(1)                                                    <-----------HVH21                                                   <-----------RAV1(1)                                              <----------DOF2                                           <---------ANAC46                                           <---------ANAC58                        --------->ARR11(3) <---------ANAC58        <-----------RAV1(1)                     <---------GLK1(2)--------->ANAC46<---------ANAC58 <------MYB46(1)               <---------YAB1       --------->MYB52(1)<---------ANAC58 <------MYB83             <-----------GT1 <---------HSFB2a(2) <---------At5g28300  <---------AtMYB61  --------->ARR14(2)            --------->ICU4   --------->HSFB2a(2)<-----------GT1<----------DOF2       <---------ZAT14       ----------->GT1  <---------ARR11(3)--------->ABI4(2)*TSS<---------DAG2        --------->ZAT14      <---------TOE2(3)--------->RVE1(1)  <-------TEIL<---------bZIP60(1)          --------->ANAC46 <   tagctactaatgtaattactatagaatatctctcgaacacacggtgcgttttactgtcgtcgctcctttttgttggtctgtttccacttcagttcttctc  15881300                                                                                            ---------                                                                                           --------->ATERF1(1)                                                                                           <------NtERF2                ------->GAMYB                                                              <-------GAMYB            --------->MYB46(3)                                     <---------ANAC46       <---------MYB46(3)            --------->REM1(1)                                     <---------LBD16        <---------ANAC46       --------->ANAC58            ------->GAMYB              ---------->DOF2            <---------DREB2C(2)       --------->ANAC58           --------->MYB46(3)  --------->GLK1(1)                  <---------DEAR3(1)      --------->DAG2            --------->MYB52(1)    <---------At4g35610             <-----------RAV1(1)     ---------->DOF2         --------->TOE1(3)        --------->ZAT2------>NtERF2  <---------ARR14(2)  --------->LBD16            --------->TOE2(3)        <---------GLK1(1)<--------P  --------->ARR14(2) <---------HSFB2a(2)  --------->TOE2(3)               --------->At4g35610         <---------GLK1(2) --------->HSFB2a(2)  >>>>>>>>>RAP2.2       <-----------GT1--------->LBD16    <---------LBD16 ---------LBD16 --------->TOE2(3)--------->RAP2.6(3)  <---------ZAT2--------->LBD16--------->GLK1(2)   cctccggaaaagctacaaccccaatctaaaaccctaacggccatttctaccatcggagctccgaaaatgccgggtatgtcttcggaatctggcggtggag  15881400                                                                                                    <                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                                 <---                                           ------>ZmHOX2a(1)                                    <----                                 --------->ALFIN1                                             <------                                <---------MYB52(1)                    <-------TEIL            -------                               --------->LBD16                        --------->ZAT14        <-------GAMYB                             <---------LBD16                         <-----------HVH21   ------>ZmHOX2a(1)                   ----------->GT1     <---------ARR14(2)          --------->LBD16       --------->LBD16                  --------->ANAC58     --------->ARR14(2)        <---------LBD16        <---------LBD16 >ALFIN1          --------->ANAC58    <---------CCA1(2)  <------NtERF2<---------ZAT14  ----------->RAV1(2)   aattggttctgttttcgaccaaggaaaaaactccggtgttgtatcctctaagctatggcctcaagtctccggttcacaggctctccatctcctggggttg  15881500         -------->P         ------>MYB83         ------>MYB46(1)                                               <---------AtMYB61       --------->TOE2(2)                                               --------->DAG2           -----       --------->AtMYB61                --------->ANAC55(2)            --------->MYB59         <----- ---------ARR14(2)                      <---------ANAC55(2)          <--------P               <------ ------>LBD16              <------ZmHOX2a(1)  <---------ICU4     <---------ANAC46            <------- ------ANAC46 ----------->HVH21         --------->ANAC58        <------MYB83 --------->DOF5.7(2)<---- ------HSFB2a(2)         <---------TOE2(3)    --------->YAB1   --------->ALFIN1             <-------- ------ANAC55(2)     <----------DOF2    <---------ANAC46       --------->MYB111(1)          --------- ------ANAC58<-----------HVH21          --------->ANAC58       <---------AtMYB61<---------TOE2(3) ------ANAC58<-----------TGA1         --------->CCA1(2)        --------->MYB111(2) <---------MYB52(1) -----LBD16 --------->bZIP60(2)    <---------ZAT6  --------->ETT(2)<---------MYB46(3)     ---------->CDC5 --P   --------->TOE1(2) <---------TOE1(3)   --------->ICU4    <---------MYB46(3) --------->TOE2(3) -->ALFIN1  --------->ANAC46     --------->LBD16----------->TGA1<------MYB46(1)<---------DOF5.7(2)  <   cggaaacaacctacgcgtcacggttttaaggaatccagagttacgcgatgatgacgacggagaagttggtggtaaggtcgtaaacgttaggcttagcggc  15881600                                =====================HOX2a_HOX2a   ----------->GT1              <------ZmHOX2a(1)  <---------DEAR3(1)           <---------HSFB2a(1) ---->DEAR3(1)                 --------->HSFB2a(1)        --------->SPL7 -NtERF2                   <---------ANAC46              <---------MYB52(1) --------->At4g35610 ---RAP2.3(1)           --------->ALFIN1      ------>ZmHOX2a(2)          --------->ZAT14 --DEAR3(1)        <---------ALFIN1------>ZmHOX2a(2)    <---------SPL7   <---------ZAT14 -----ANAC46       ----------->RAV1(1)      <---------ARR14(2)  <---------DAG2 -At4g35610     --------->PCF2 <---------HSFC1(2) <---------ARR14(2)     --------->At4g35610 >At4g35610   ----------->HVH21--------->HSFC1(2) --------->ARR14(2)   <XXXXXXXXXXXXXXXXXXXXMIR413 ------ZmHOX2a(1) --------->MYB46(3)        --------->ARR14(2)  <----------DOF2   gaggatggcgaaatcagtgacccacagtggcgaaggatcgcttatggatcggtatctccgttcgcgcttttgcagagcagaagaaactcaatttccagtt  15881700                                              --------->GLK1(2)                                              <---------ARR11(3)                                              --------->ARR11(3)                                              --------->ARR14(2)                                              <---------ARR14(2)   <---------ARR11(3)                                              <-----------ARR10    --------->ARR14(2)                    ------>ZmHOX2a(1)    <---------ANAC46          --------->ARR11(3)          <---------GLK1(1)           --------->ALFIN1             <---------ARR14(2)          --------->CCA1(2)         <---------ANAC46             <---------TOE1(2)         --------->ARR14(2)         <---------ANAC58           <---------LBD16<---------ATHB12         <---------ARR14(2)         <---------ANAC58<----------DOF2<---------GLK1(2)   tgtctaagatggatatgagttcctctctgtatcagactgcgtggtgagtatcttctttgtaaattcccagattttgcccattcaatactgaaatactgtt  15881800  Previous    Next  AGI:  At4g32900.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03010.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03010.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO44014.1); contains InterPro domain Peptidyl-tRNA hydrolase, PTH2 (InterPro:IPR002833) Range:  from: 15878737    to: 15881044    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g32910.1    Description:  similar to nucleoporin [Lotus japonicus] (GB:BAF45348.1); similar to putative nucleoporin Nup75 [Oryza sativa (japonica cultivar-group)] (GB:BAD87530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44018.1); contains InterPro domain Nucleoporin, Nup85-like (InterPro:IPR011502) Range:  from: 15881259    to: 15885419    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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