Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                <---------AHL20(2)                <---------ANAC55(1)                  --------->AHL20(1)                <---------ANAC46                     <---------AHL20(1)                          <---    ----------->HVH21 <---------AtLEC2               --------->AHL20(2)                <---------CCA1(2) -------->ATHB1 <---------ANAC58               <---------At4g35610--------->MYB46(3)  ------->TEIL --------->ATHB51    <---------REM1(2)     --------->ANAC46 ------->TEIL          ------->TEIL  <---- --------->ATHB12  --------->REM1(2)   <-----------GT1     <---------CCA1(2)     --------->MYB52(1)<- ---------YAB1  <---------ANAC58<---------TOE2(3)    <---------AHL20(2)    ---------->DOF2-----------   gtattattgacaggtataccgtgtacatggaattaatgtttttactcgctgctaataaaatgtatcttaccaccaatttaagcgaacgtatatcgtatta  15827800                                                                                         --------->YAB1                                                                                         <---------ICU4                         --------->GLK1(1)                                              --------->ICU4                     <-----------RAV1(2)                                              --------->YAB1   --------->ZAT6--------->At4g35610                                                  <---------ICU4 <-----------GT1 <---------At4g35610                                                 --------->ICU4 ------YAB1      <---------ZAT2                                      --------->YAB1--------->YAB1   - -----AHL20(2)--------->At4g35610            <---------AHL20(2)     <-------TEIL--------->TOE1(3) --- --------AHL20(2)--------->ZAT2 --------->MYB46(3)             --------->YAB1   --------->TOE2(3) --- >GT1         <---------At4g35610           --------->AHL20(2)<------ZmHOX2a(2)----------->GT1-------   ttttaacaatagtttcagcagctgcaggtttccaacgactaatcttttaaattttggaatagcgatcatattcatcatatatcgttaataatcatgaacc  15827900        <------MYB46(1)          --------->TOE2(3)              --------->TOE2(3)        <------MYB83         --------->YAB1                    --------->YAB1       --------->MYB59      <---------YAB1                     <--------HAHB4   --------->ATHB12        <---------ARR11(3)                 <---------YAB1  <---------YAB1  --------->ARR11(3)                          <---------ATHB12     --------->ANAC58 -------->YAB1    <---------ARR11(3)                         ------>MYB46(1)       --------->ANAC58 --->MYB46(1)     --------->GLK1(2)         ---------->ID1   ------>MYB83  --------->TOE1(2) --->MYB83   <------NtERF2 --------->ARR11(3)          <-----------GT1     --------->TOE2(2) >TEIL <---------AtMYB61--------->YAB1--------->ARR11(3)<-----------GT1   --------->YAB1   aaatatgatttggtcgccaaaatctataatatcatcgttagaacttgtcgctatttttaaacctatcattaacttaacataagacaaacaagacttggtt  15828000                                            ---------->DOF2                                          <---------YAB1          <-----------GT1                                  --------->TOE1(3)            --------->AHL20(2)                                  --------->TOE2(3)     ------>ZmHOX2a(1)                   ----------->GT1--------->YAB1    --------->ARR14(2)                            ---                --------->ATHB12 <---------YAB1     <---------ARR14(2)               <-----------HVH21               <---------YAB1   --------->ARR11(3) <---------GLK1(1)              -------->P   <-----        --------->MYB46(3)      <---------ARR11(3) --------->GLK1(1)              <---------At5g28300   cttggttacaaccactagtgattgtaaaacgaattatcttaactatgaaagaggtatcctacaaattaaaaccgcatcaaaacttaccgtcaaacttctt  15828100         --------->YAB1      --------->YAB1                  <---------ARR11(3)      <---------ICU4                  <---------AHL20(1)      -------->HAHB4                  --------->ARR11(3)     <---------YAB1    --------->ARR14(2)                                       <---------ARR11(3)     --------->ICU4    <---------ARR14(2)                                       --------->ARR14(2)   <---------ICU4      ------->TEIL   <---------AHL20(2)                        <---------ARR14(2)   --------->YAB1      <---------ARR11(1)                          <--------HAHB4  --------->AHL20(2)  <---------CCA1(2)                            <---------ICU4<------ZmHOX2a(2)  --------->ICU4      <---------ARR14(1)                           --------->ATHB12   ---------->DOF2  <---------ATHB51  --------->ANAC46  --------->AHL20(2)          <---------ATHB12   <---------MYB52(1)  <---------AHL20(2)--------->ANAC55(2)    <---------AHL20(2)   --------->WOX13(1)------>ZmHOX2a(2) ------>AHL20(2)  <---------ANAC46    --------->AHL20(1)     --------->GLK1(2)  --------->ARR11(3)  - -----DOF2<-----------TGA1          ------->TEIL         --------->YAB1   <-----------GT1           -   ttaaataattatcgtcatttacgcgtatctaaaaaatgaatatattatatcaacttgaataagaatccatcatttgtaacaagatcccttaagcgagacc  15828200                       <---------MYB111(2)                       --------->AtMYB61                       <---------MYB46(2)                       <---------MYB111(1)               <---------ANAC58              <-------TEIL<---------ATHB12            ------->MYC3 ------>MYB46(1)                       <---------ANAC58            <-------MYC3 ------>MYB83               <---------ANAC58              --------->ZAT14      --------->ANAC46 --------->MYB46(3)           <---------ANAC58      <----------DOF2 <<<<<<<<<<GATA-1     <-------TEIL     --------->ANAC58           <----------DOF2    <---------ZAT18      <---------GLK1(1) ---------->TBP<---------ANAC58 *TSS          <-----------GT1  <---------ANAC58   <---------ZAT14 -------->AHL20(2)    --------->ANAC58        <---------AHL20(2)    --------->ZAT18      --------->GLK1(1)   ctataaatacatcacatgcgtagcaccaaacattcactaaaacttcatttactttcttgaacttgtcttgtgccctctttccaatacactgaaatccact  15828300                 ---------->DOF2                                               <---------YAB1               <---------AHL20(2)                                            <---------ICU4               --------->AHL20(2)                                            --------->YAB1               --------->YAB1                                               <---------ATHB12           --------->AHL20(2)                                          --------->ANAC58           <---------AHL20(2)                                      --------->MYB46(3)          --------->AHL20(2)                                  --------->YAB1--------->ICU4       <---------AHL20(2)                            <----------DOF2 ---------->DOF2      <---------ICU4       --------->AHL20(2)                           <---------ANAC58--------->AtMYB61  <---------ICU4   --------->AHL20(2)                               <---------ANAC58------->GAMYB     --------->ICU4  <---------ARR11(3)         ----------->GT1   <------ZmHOX2a(1)  --------->ANAC58    <---------YAB1  --------->AHL20(1)       ---------->DOF2  <-----------RAV1(2)   --------->ANAC58  --------->YAB1 --  <---------AHL20(1)  ---------->DOF2     ------>NtERF2 <----------DOF2--------->ANAC58--------->YAB1   tcaaaatatttatttaataaaaagaaaagaaaagaaaaaaactctgccaggatggcttctttgatcacaaccaaagcaatgatgagtcatcatcatgttt  15828400                                                                                                   <-                                                                                                   <-                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                                                                                           <---------LBD16                                                                                  <---------MYB52(1)-                                                                                 ----------->GT1  ---             <---------ICU4                           --------->AHL20(2)     <---------ALFIN1    <---   <---------WRKY12                               --------->MYB46(3)        ----------->HVH21  <-----  --------->DOF5.7(2)<----------DOF2    <---------DEAR3(1)        --------->TOE2(3)  --------->MYB52(2) -------->ID1<-----------GT1<---------ETT(1)  <------ZmHOX2a(2)   --------->TOE1(3)<---------MYB52(1)   tgtcgtcaactagaatcactactctttattccgacaattccatcggcgatcaacaaataaaaacaaaacctcaagtccctcaccggttatttgctcggag  15828500                                     <------NtERF2                                     --------->DEAR4(2)    <---------ANAC46                ------>NtERF2   <---------DEAR3(1)               <---------ATERF1(1)  <---------------------WRI1      --------->ATERF1(1) --------HSFB2a(1)                <------NtERF2 --------GLK1(1)                  <---------ABI4(2) -----ZmHOX2a(2)                 <---------ATERF1(1) ------>GLK1(2)                  <---------RAP2.3(1)                                           ------ ------>ARR11(3)                --------->ANAC46                                             -------- -------ARR14(3)               --------->At4g35610--------->ETT(1)                          <-------- -------ARR11(3)               <---------At4g35610<---------ANAC46                          <-------- ---------ARR10         <---------AHL20(2)       <---------LBD16                            <-------- ------>ARR14(3)        <---------AHL20(1)    <---------MYB52(1)                            <-------- -------ARR14(2)        --------->AHL20(2)   <-------GAMYB                ----------->ARR10 <-------- ----->ZmHOX2a(2)  --------->At5g28300--------->DEAR3(1)      --------->DAG2   <---------DEAR3(1) ------>ARR14(2)  ----------->GT1--------->RAP2.6(2)<------NtERF2--------->ALFIN1          <--------- ---ZmHOX2a(1)  --------->At4g35610--------->DEAR3(1)  ---------->DOF2<------MYB46(1)  <-----------RAV1(1) ----TOE1(2)    <---------At4g35610<---------ALFIN1--------->LBD16    <------MYB83 <-----------HVH21   gatcttcggtgtaaccagagctgtaattaattcagcggcaccgtctccgttgccggagaaagagaaggtggaaggtgagagacggtgtcatgttgcgtgg  15828600                                                              <------MYB83                                                       --------->TGA1a                                                       <---------O2                                                       <---------TGA1a                                                       --------->O2                                                       ==========================bZIP_DOF                                                      ------>MYB46(1)                                                      ------>MYB83   --------->ZAT18                                   <---------ALFIN1   <---------ZAT18                               --------->GLK1(1)   <---------ZAT14                               --------->CCA1(2)   --------->ZAT14                              <---------ARR11(3) --->ZAT18                                      --------->ARR14(2)         <-----------GT1 ->LBD16                                        --------->ARR11(3)    <----------DOF2 -AtLEC2                                    ---------->DOF2   <------MYB46(1) -ANAC58                                    =====================bZIP_DOF <-----------GT1 -ANAC55(1)                              --------->ANAC46   <---------ANAC46 -ANAC46                ----------->GT1  --------->ANAC58   <---------ANAC58 --------->YAB1         < -ANAC58               <---------MYB46(3)--------->ANAC58   <---------ANAC58<---------YAB1          - --------------TaNAC69(2)       <-----------GT1 <---------ARR14(2)  ---------->ID1<-----------GT1  --   acaagtgtacaacaagagaattgggagggtgaacttactgtccaaggaaagatacccacttggctggtttgtctttttatcatttttctatattgctcca  15828700  Previous    Next  AGI:  At4g32810.1    Description:  CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8). Identical to Carotenoid cleavage dioxygenase 8, chloroplast precursor (CCD8) [Arabidopsis Thaliana] (GB:Q8VY26;GB:Q9M079); similar to NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6) [Arabidopsis thaliana] (TAIR:AT3G24220.1); similar to Dad1/CCD8 [Petunia x hybrida] (GB:AAW33596.1); similar to dioxygenase RAMOSUS1 [Pisum sativum] (GB:AAS66906.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44021.1); contains InterPro domain Carotenoid oxygenase (InterPro:IPR004294) Range:  from: 15828232    to: 15831489    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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