Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------YAB1                                                    --------->ZAT6                       --------->AHL20(2)        ----------->GT1                       <---------bZIP60(1)                       --------->YAB1            ------>ZmHOX2a(1)                     --------->bZIP60(1)           <----------ID1    <-----------GT1--------->KAN4(2)                        --------->YAB1         ---------->DOF2<---------TOE2(3)  <----------TaMYB80                        <---------ICU4       <---------HSFB2a(2)--------->YAB1   --------->KAN4(1)                        --------->ICU4  < ----ZmHOX2a(1)        <---------AHL20(2)  <---------KAN4(1)                        <---------YAB1  < -----TOE2(3)        <---------YAB1  ---------->DOF2        --------->REM1(1)     --------->YAB1  <--   ggaagcattctaaaagacaaactattaatattaactgctaaaagtatattcctgtaaattctacaactgtatcaattgactcactgatgatgacactatt  15790000                  <---------AHL20(2)                 --------->AHL20(2)                 --------->AHL20(1)                 <---------AHL20(2)                                                     <------MYB46(1)        ----------->GT1                                                                 <------MYB83 --------------->AGL15                                                                 --------->MYB59 <---------------AGL15                                                            <---------YAB1 ---------ANAC58 <---------AHL20(1)                                             ----------->GT1    <- ---------ANAC58--------->AHL20(2)                                        --------->ETT(2)       <--- ---------GT1<---------YAB1   --------->AHL20(2)<---------YAB1       <----------DOF2   <---------TOE2(3)   ttacttgaagtagttaaaattaattttgaaaatcaaatagttttggtattcttcttggtcttctcgtttgactttgtctacattgttattaggtttttat  15790100                 <---------MYB52(1)               <---------------AGL15              ----------->GT1             --------->At4g35610                 --------->YAB1                          <---------MYB52(1) --------YAB1<---------At4g35610             <---------AHL20(2)       --------->AtLEC2  <-------GAMYB ------At4g35610<-----------HVH21        <----------DOF2         <----------DOF2  <----------DOF2   >   gctgattttagaattagctgttactggcaatttcatcttcttcctttttaatgagaaaaaaactcttctttcatacaaagaatgctttgccgttgtttag  15790200                                                                   --------->YAB1                  <---------HSFB2a(2)                  --------->AHL20(2)               --------->GLK1(2)                       --------->AHL20(1)               --------->ARR14(2)                      <---------AHL20(2)               <---------ARR14(2)                      <---------AHL20(1)          ------->GAMYB                               --------->AHL20(2)       --------->MYB52(1)                             <---------AHL20(2)       ----------->RAV1(1)                         --------->AHL20(2)   --------->CCA1(2)    --------->ANAC58                              <---------AHL20(2)  --------->YAB1           <-----    --------->ANAC46                              --------->AHL20(2) <---------YAB1   --------->DAG2    --------->ANAC58 ---------->DOF2          --------->AHL20(2)<----------DOF2      ---------->DOF2 >>>>>>>>TBF1 <---------GLK1(2)           ----------->GT1<------------CBF <---------YAB1      -------   aagaagaagcaacagagaatctcgaaagaaaaatgaatgaagaaacgtataaataaataaattgaacttttatgatatgagagactaaaaagcgagattc  15790300                                                                                    <---------ALFIN1                         <----------DOF2                                          <------NtERF2                     <------ZmHOX2a(2)                                            ------>NtERF2                    <---------ARR11(3)                                          --------->SPL7              --------->At4g35610          ------>ZmHOX2a(2)                  <---------SPL7 <------------CBF   --------->ARR11(3)   --------->ARR11(3)                  <---------ANAC58 --TEIL   --------->MYB52(1)  <----------DOF2                                <---------ANAC58 -->GLK1(2) --------->MYB46(3)<---------DAG2      *TSS                   <---------GLK1(1)   agagattgaaatcaacggctgagatcactttcctttttgttttgatctctctctctctctctctctctcacttcgaattccgtccgcctctccatgtttg  15790400      xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                            <   agttttgaatacctctctctctctctctcattctctctctctctctctctctctctctctctctctctctctctctctcgacttcgatttcgatttgtgt  15790500                                                                               <----------DOF2                              --------->ICU4                                 --------->At4g35610                 <---------ARR14(2)                                <---------AtLEC2            <---------At4g35610                                 ------>ZmHOX2a(2)            --------->At4g35610   <-----------GT1              <---------At4g35610            ----------->RAV1(2)<---------ICU4<---------AHL20(2)--------->At4g35610      <<<<<<<<<TBF1     <---------At4g35610 <---------AHL20(2)<---------ARR14(2)         ----------->HVH21   <<<<<<<<<TBF1 --------->ARR14(2)         --------->AHL20(2)--------->ARR14(2)        --------->SPL7 <<<<<<<<TBF1    <---------GLK1(2)<---------AHL20(2)  <---------GLK1(1) --------->ALFIN1<---------TOE1(2)   tcttcttcttcttcatctggattctcagcgtcttaattacttcagattaattttggaattcgttgatctgcaaggtgtgagctttactcgtatgacctcg  15790600             <---------YAB1                                                                    <-----           --------->YAB1                                                                      <-----          <---------YAB1             --------->ANAC46           <-----------ARR10              <-----       --------------->AGL15        <---------LBD16             --------->GLK1(2)             -------       <---------------AGL15      <---------REM1(2)             --------->ARR11(3)      -------------      <-----------------AGL3 --------->MYB52(2)                 <---------ARR11(3)      <---------DAG2      ===============================================================================================  ------>ZmHOX2a(1)        <---------MYB52(1)      ------>ZmHOX2a(1)                    <----------DOF2   tctccttctcttattatggtcacatttttgttagttttcacggagacttcttcctgatttttcaaaaatctactctttgaacttctcttactttttttcg  15790700 ----ANAC46                       <----------DOF2 ----ANAC58                     <---------HSFC1(2)                                       <---------TOE2(2) ----ANAC58                     --------->HSFC1(2)                                       <---------TOE2(3) --->ID1           --------->At4g35610                                    <---------LBD16<---------TOE1(2) -->AGL15          <---------At4g35610   <---------HSFB2a(2)   --------->HSFB2a(2)   <---------YAB1 ===MADS_MADS    <-----------RAV1(2)     --------->HSFB2a(2)   <---------HSFB2a(2) <---------CCA1(2)   tataaagtttcgattttcttcagatgatgttcgaagcttttttctcgaggtttttgttttgggttctgaaactaattcgggcttcttatcttaggttttt  15790800                  ---------->DOF2                >>>>>>>>>RAP2.2              --------->ARR11(3)              <---------ARR11(3)                  <---------ANAC58        --------->YAB1                            <---------ANAC46        --------->TOE2(3)                         <---------ANAC58   ------>ZmHOX2a(2)                    --------->ZAT14  <------ZmHOX2a(2)                     <---------ZAT14                                        <----- --------->ARR14(2)                     <---------ZAT18                  <----------DOF2     <------- <---------ARR14(2)     -------->P   <---------ANAC46        <----------DOF2         <---------At4g35610   ttggatccaatctcaatatctaaagctaccttcttcattctgtgaacttcttccttgttttgactttagtttgctcttttgctgtgaagctaatgctgat  15790900  Previous    Next  AGI:  At4g32720.1    Description:  ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1); RNA binding. similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G79880.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66913.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA binding motif (InterPro:IPR014886); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR0066 Range:  from: 15787214    to: 15789906    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g32730.1    Description:  PC-MYB1 (myb domain protein 3R1); DNA binding / transcription coactivator/ transcription factor. Identical to Myb-related protein 3R-1 (MYB3R-1) [Arabidopsis Thaliana] (GB:Q9S7G7;GB:O65528;GB:Q9LDX5); similar to MYB3R-4 (C-MYB-LIKE TRANSCRIPTION FACTOR 3R-4, myb domain protein 3R-4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G11510.2); similar to MYB3R-4 (C-MYB-LIKE TRANSCRIPTION FACTOR 3R-4, myb domain protein 3R-4), DNA binding / transcription coactivator/ transcription factor [Arabidopsis thaliana] (TAIR:AT5G11510.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44062.1); contains InterPro domain Myb Range:  from: 15790350    to: 15794257    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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