Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   ----------->GT1                                                                ------->MYC2                                                                ------->MYC3                                                                <-------MYC4                                       >>>>>>>>>RAP2.2          <-------MYC3                              <---------WOX13(1)         <---------At4g35610                         <---------ANAC55(2)             --------->ZAT2 <---------TOE2(3)           -                <---------AtLEC2       --------->TOE2(3) <---------ZAT2<-----------GT1              <        --------->DAG2   --------->ANAC55(2)   --------->DAG2   <-------MYC2                       --       ---------->DOF2  <-------TEIL--------->WOX13(1)   --------->At4g35610                      ---  ----------->GT1      --------->CCA1(2)      ---------->DOF2<---------ALFIN1    <---------YAB1   <--   aagacggagaaaagttgtgcatgagatacatgactgatcaatctaaaaaaaagtttcttagctgcacatgtaataacgttgttatgttacacaagtacaa  15786800      <---------ANAC58      <---------ANAC58                            --------->ZAT6      <---------ANAC46                        --------->At5g28300--------->ARR11(3) --------->ATHB12                            ----------->GT1     <---------ARR11(3) <---------ICU4                            --------->At4g35610  <---------CCA1(2) --------->ATHB51                     --------->ANAC58         <---------AHL20(1) -------->ICU4                        --------->ANAC46         --------->AHL20(1) ---------YAB1         --------->ZAT14--------->ANAC58     --------->YAB1           XXXXXXXXXXXXXXXXX ------->TOE2(3)     --------------->AtSPL8<---------At4g35610 <---------ARR11(3)  --------->YAB1 ------>YAB1      <---------YAB1    --------->MYB52(1)     <---------ICU4     --------->AHL20(2) -------ICU4  --------->WOX13(1)  <---------MYB52(2)    --------->YAB1<----------DOF2   acattattgcgaatgtcaatctcattgtactccaaaacaaacgtaagctgtaactctataatcaatatatctctttacaactaaataagaattgttgata  15786900                                           <---------WOX13(1)               --------->ANAC58          --------->ATHB12                        <---------ICU4               --------->ANAC46         --------->ICU4                           --------->ATHB12               --------->ANAC58         <---------YAB1                          <---------YAB1       <---------ZAT6                 --------->At4g35610                  ------>ZmHOX2a(2)  ----------------------->TaNAC69(2)  <---------At4g35610                --------->ARR11(3) XXX>MIR2937 <-----------GT1    <-----------RAV1(1)   ------->TEIL       <---------ARR11(3)   -------   gagtttgtagtgttttcacgactcaaaaatacaaatgttgtgctgattgaagtatgaatttttggttcaagtcttgatcttgatcattgaaaaaaatcgt  15787000                                                                                                    <                                   <---------ANAC58                                                --                                   <---------ANAC46                                                <-                           --------->ANAC58                                                     -----                           --------->ANAC55(1)                                                <------MYB46(1)                           <---------ANAC55(2)                                                <------MYB83                           --------->ANAC55(2)                                                <------                           --------->ANAC58                                                   <------                           --------->ANAC46      <---------REM1(1)                           -------- --------->ARR11(3)       <-----------------------TaNAC69(2)                            <---------ZAT14 --------->AHL20(1)   ---------->DOF2            <---------ZAT6                         --------->ZAT14 <---------AHL20(1) ------->GAMYB  <---------ANAC58             ----------->GT1    ---------->DOF2<-- ---->GT1        --------->MYB52(1)----------->GT1    <------ZmHOX2a(1)    <-----------GT1   <-------   gaaaatattgatcaattgccaacgaaaagacgtaatggggtgaatcagatagtgtaggattatttggggtaattttgttacattctaaagtatagtgggt  15787100                                                                                        --------->YAB1                                                  <---------AHL20(2)                <---------AHL20(2) -------GAMYB                        --------->ANAC55(2)                           --------->AHL20(2) --------->GT1           <<<<<<<<<WRKY18         --------->AHL20(2)                <---------AHL20(2) --------ANAC46          <---------WRKY12        <---------AHL20(1)             --------->AHL20(2) ---->ALFIN1            --------->WRKY18(1)      --------->AHL20(1)            --------->AHL20(2) ---ANAC58           --------->DAG2  --------->ANAC46                          <---------AHL20(2) ---ANAC58          ---------->DOF2  --------->ANAC58       ----------->GT1 --------->AHL20(2) ->MYB55(2)      --------->AHL20(2)  --------->ANAC58------------>CBF      --------->AHL20(2) ----NtERF2      <---------AHL20(2)  <---------ANAC55(2)    <----------ID1 <---------AHL20(2) --MYB46(3)  <---------ZAT6  ----------->GT1    --------->YAB1         --------->AHL20(2)------------   ggggttaaattgatagtattaaaaaagtcaagggttaatacgaaatacaaatataatcaatagcgaaaaaccaaaaaataaataaataaatgacaatttg  15787200                                                   <---------DAG2                     <---------CCA1(2)                                                   <----------DOF2                  ------>ZmHOX2a(1)                                               <---------ZAT18                   ------>ZmHOX2a(1)                                         --------->TOE2(3)                      <---------ALFIN1              *TSS                    <-----------GT1                 <---------CCA1(2)   <----------DOF2 >CBF  <----------DOF2              <---------ATHB12            <---------YAB1------>ZmHOX2a(1)   actcgaaaactttaagagaaaatggaaactgtgtctcaataaaccctagtaccctttttctctcttattcttctatcttcctcctcctctatctttcgct  15787300                        <---------ANAC58                                                          ---                        <---------ANAC58                                                      <------             <---------ICU4                                                                   <------             --------->YAB1                                                             <<<<<<<<<TBF1            <---------ATHB12                                       <-------TEIL      <<<<<<<<<TBF1<--            <---------ATHB51      ------->GAMYB               <-----------RAV1(2) <<<<<<<<<TBF1 <----            --------->ICU4     --------->MYB52(1)          --------->ANAC46 ---------->ID1 <---------At4g35610   cgagccattgagcaattatgtcgattccttgtctaaccgaagagacagccaaaactgttcttcgccaggtacaaacttgtcttcttcttcttcttctgcg  15787400  ------>ZmHOX2a(1) ------>ARR14(2) ---At4g35610                                                                                    ---- ---LBD16  --------->At4g35610<----------DOF2                        --------->ALFIN1    --------->YAB1 -------ARR14(2)           <-----------GT1                    <---------AHL20(2)      --------->YAB1 -----MYB46(3) --------->REM1(1)            <---------YAB1   --------->AHL20(2)      <---------ZAT6   gttcctctctagtagcttcaccagttttttttctttcgattatgttctgatatttgatatcgattttataggtggagttctatttcagtgatagtaatct  15787500              ------>ZmHOX2a(1)             --------->TOE2(3)         --------->GLK1(1)         <---------GLK1(1)       --------->ATHB12      <---------YAB1     <---------TOE2(3)    --------->YAB1       <-------GAMYB                   <-----------GT1 ---->P<---------ICU4------------>MYB.PH3(1)     ---------->DOF2                                <----   acccattgatgatttcctcaagaagactgttacagagagcgaagatggctgtaaagttttaaacttttaaacaaattcagtcgctatcgctgtgtatttt  15787600                                                                                          <---------RVE1(1)                                                                                          <---------CCA1(1)                                                                                          <---------GLK1(1)                                                                                         --------->ARR11(3)                                                                                         --------->ARR14(2)                                                              --------->ATHB12           <---------ARR11(3)                                                             ----------->ARR10           <---------ARR14(2)                                                           <-------GAMYB <---------MYB52(1)                                                          <---------ANAC46              <------ZmHOX2a(1)                       <---------YAB1                     <---------ANAC58      <---------At4g35610 <---------AHL20(2)   <---------TOE2(3)                   <---------ANAC58      --------->At4g35610 -----YAB1         <---------WOX13(1)          <---------MYB46(3)       <----------DOF2----------->GT1   gatttttttttgttatggctaattgatgattttttggtttgtcaaatagtggtgagtttggcgttgatttgctcctttagtaagatgagaggatatttga  15787700  Previous    Next  AGI:  At4g32717.1    Description:  SCRL24 (SCR-Like 24). Identical to Uncharacterized protein SCRL24 precursor (SCRL24) [Arabidopsis Thaliana] (GB:P82643); similar to SCRL25 (SCR-Like 25) [Arabidopsis thaliana] (TAIR:AT4G32714.1); contains InterPro domain Plant self-incompatibility response; (InterPro:IPR010682) Range:  from: 15786342    to: 15786846    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g32720.1    Description:  ATLA1 (ARABIDOPSIS THALIANA LA PROTEIN 1); RNA binding. similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G79880.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66913.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA binding motif (InterPro:IPR014886); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding protein Lupus La (InterPro:IPR0066 Range:  from: 15787214    to: 15789906    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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