Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <----------ID1      --------->ANAC46   --------->MYB52(1)                                  ----------->ARR10      --------->ANAC58   ---------->DOF2                              ----------->RAV1(2)      --------->ANAC58  --------->AtMYB61                            ------->TEIL    ---------->DOF2     ------->GAMYB                              ------->GAMYB--------->GLK1(2)  ------>ZmHOX2a(1)    --------->MYB46(3)                         --------->MYB46(3)               <- --------->TOE1(3)    -------->P                                  <---------MYB52(2)           <----- --------->TOE2(3)   --------->WOX13(1)         ---------->DOF2  <---------TOE2(3)             <----- -REM1(2)      <---------WOX13(1)           --------->AHL20(2)  <-----------GT1<---------GLK1(2)   ==   gttccttaaagccactaattgatcaaccaaaggaacaaaactagaattaaaaaagcttgaaacttttaacgaacctgatgagattcttcgaagtaatacg  15694700                 --------->DEAR3(1)              <---------ALFIN1             <---------SPL7             <---------ABI4(2)     <---------MYB52(1)            --------->RAP2.6(2)  --------->ANAC55(2) <---------HSFB2a(1)             --------->LBD16----------->RAV1(2)                    <---------WRKY12 --------->HSFC1(2)              --------->ANAC46 --------->LBD16                      <---------WRKY38(1) --------->HSFB2a(1)             <---------ANAC55(2)                               --------->DAG2 <---------HSFC1(2) <------ZmHOX2a(2)           <---------LBD16                   --------->DAG2 -----ZmHOX2a(1)--------->DEAR3(2)--------->LBD16--------->LBD16                 ---------->DOF2 ----TOE2(1)--------->DEAR3(1)  <---------HSFB2a(2)                  ---------->DOF2  --------->WRKY18(1) ----TOE1(1)--------->ANAC46    --------->HSFB2a(2)            ----------------->AGL3<-----------HVH21 ==========================HOX2a_HOX2a----------->GT1   <----------ID1       <---------YAB1  <-------   aggagcttctatagccgcaccgatcaaactacttcccgtaatgtaaattcccctgaataagacaaaccaaaaaaagatgatgaaaaaggtcaatgcttta  15694800                                               <------ZmHOX2a(1)                                       <------NtERF2                                       <---------ABI4(2)                                      <---------ORA47(2)                                      <---------ATERF1(1)                                      ------>NtERF2                                      --------->RAP2.6(2)                                      <---------DEAR4(2)                                      <---------RAP2.3(1)                                     --------->ATERF1(2)                                     <---------DEAR3(1)                                     <---------RAP2.3(2)                                     <---------ATERF1(2)                        <-------TEIL--------->RAP2.6(3)                            --------->LBD16                       --------->ARR14(1)  --------->DEAR3(1)                     <---------ANAC46                       --------->CCA1(2)  <------NtERF2                           <---------ANAC58                      <---------GLK1(2)--------->ATERF1(1)                  <---------YAB1      ------>NtERF2   --------->ARR14(2) ------>NtERF2                     ----------------->AGL1     ----------->HVH21--------->ARR11(1)<---------ALFIN1                 --------->ARR14(2)    ------   --------->LBD16    <---------ARR14(2)--------->DEAR3(1)               <---------ARR14(2) ---------  <---------ANAC46  ----------->ARR10<---------RAP2.3(3)                 --------->GLK1(2)  <-------- <---------LBD16--------->YAB1   <-----------RAV1(2)         <------ZmHOX2a(2)    <---------ANAC58 ---DOF2     >>>>>>>>>TBF1    <-----------GT1  =====================HOX2a_HOX2a  <---------LBD16    -   atctgcggggacgaagaagaataagattcgatttaccaggcggcaccgaggactgagacaccgatcgagatggcgattccgattgcggagaaagtatacg  15694900        -------->P      ------>ZmHOX2a(1)        --------->ANAC58    ------>ZmHOX2a(2)       <---------ZAT2   <------ZmHOX2a(2)        --------->ZAT2  <---------ARR14(2)      ------->PIF5  --------->AGP1          <-------PIF5             --------->ANAC58  --------->ARR14(2)   <---------ALFIN1            --------->ANAC46  <---------ARR11(3) --------->DEAR3(1)            --------->ANAC58  --------->ARR11(3)--------->PCF2               <---------ALFIN1 --------->GLK1(1)  --------->ANAC46             ------->GAMYB <---------GLK1(1) ------>NtERF2                --------->MYB46(3) --->ANAC46        <---------ZAT18  <---------WRKY18(1) >ARR14(2)      <---------ATERF1(1)----------->HVH21----------->RAV1(1) -ARR14(2)     <---------DEAR3(1)<---------AtLEC2--------->AtMYB61                                  < ---------->ARR10------>NtERF2 --------->ANAC58-------->P      ------>ZmHOX2a(1)               <-----   gcgagatccttaccagcgctgcgccccacgagctcgcatgaccaagagcaaccacaccagacatcctctctctctctctctctctctctctctctctctt  15695000                                             ------>ZmHOX2a(2)                                            <------ZmHOX2a(2)                                           <---------ARR11(3)                                    <---------YAB1                               --------->ANAC55(2)                               <---------ANAC55(2)                            --------->ICU4       --                               --------->O2--------->ARR14(2)            ----------->GT1       ------                               <---------ANAC46                    <------NtERF2              -------                       <---------MYB46(3)  <---------ARR14(2)    --------->ETT(1)             <------     <----------DOF2  <---------AtMYB61  ----------->ARR10       <---------ANAC46      <---------ANAC58 -----------GT1      <---------MYB52(1)--------->CCA1(2)       <-----------HVH21       <---------ANAC58 -----DOF2   <---------MYB52(1)<---------O2--------->ARR11(3) <-----------RAV1(1)<---------YAB1======   tttctctctttctctgttattccgatggtcgtctcgtgatgatacgatctgcttctctctctctctgtcggagaagagaaattatcagggcctgtgatct  15695100           <---------GLK1(1)           <------------CBF         <------ZmHOX2a(1)                                                                    -------      *TSS--------->ARR14(2)                                                                ---------      <---------LBD16                                                                       =========  <---------RVE1(1)         --------->At4g35610                                             <-------- <---------ARR14(2)         <---------At4g35610                                             ========= --------->ARR14(3)         --------->ZAT2                                       --------->MYB52(2) --------->ARR14(2)     --------->ANAC46                                <---------ARR14(2)  --------- <---------ARR14(3)   --------->ANAC58<---------ANAC58                  ------->TEIL  <---------AtMYB61 --------->ARR11(3)   --------->ANAC55(2)                               --------->ARR14(2)  <-------- <---------ARR11(3)   <---------ANAC55(2)                               <---------ARR11(1)  --------- --------->ARR10      --------->ANAC58<---------ANAC58                  <-----------ARR10   <-------- >ZmHOX2a(2)       <---------ATHB12 <---------ANAC46                   <---------CCA1(2)    <-------- -->At4g35610    --------->WOX13(1) <---------ANAC58                   <---------ARR14(1)   <-------- ---At4g35610  ------------>CBF     <---------ANAC58      --------->AtMYB61    <---------MYB52(1) ===============HOX2a_HOX2a <---------ZAT2     <----------DOF2 <----------ID1 --------->TOE2(3)     -   gaagatattcaggaattgccaatcacgcgctgctgaatgcgcgtgagtactttgtggaaaccaaaacgacaacgtatcttcgttagttttggtctcgtga  15695200  --------->SPL7  <---------TOE1(2) ---->HVH21           <-------TEIL >ANAC55(2)      <---------ALFIN1 =======================MYC_MYB -ANAC58        --------->MYB46(3) ========================MYC_MYB                                   --------->TOE2(3) >TGA1a        ------>MYB46(1)                                     --------------->AGL15 -TGA1a        ------>MYB83                                        <----------DOF2 >O2           -------->P                              <------MYB46(1)       <---------TOE2(3)     <- -ANAC55(2)  --------->AtMYB61                         ----------->GT1       <---------TOE1(3)    <-- -ANAC58    --------->MYB46(3)                         <------MYB83<---------------AGL15          <-- -O2  <------ZmHOX2a(2)                             <---------ANAC58 <---------AHL20(2)           --- -------->TOE1(2)------->GAMYB                      <---------ANAC58 --------->AHL20(2)------->TEIL--   ctcgtgcgatctaaaccaaccacattcgtcaaaaaaaaaaactgaaattttagggcttggtgaatttttctttaatttgaaggtttacgaacgtatgcta  15695300                                                                ----------->RAV1(1)                                                                <---------RAP2.6(3)                                                      <----------DOF2    <---------YAB1                                                    <---------At4g35610----------->GT1                                                    --------->LBD16 <---------At4g35610                                               --------->KAN4(2)------>NtERF2 --------->YAB1        ----------->GT1                       <---------KAN4(1)--------->ETT(2) --------ICU4                                 <---------ICU4   <---------ETT(1)               ------- -------ATHB12                               <---------YAB1    --------->ATERF1(2)        xxxxxxxxxxx -------YAB1      <---------ARR11(3)    <----------DOF2        ----------->HVH21 <---------ICU4 ------>ICU4  ---------->DOF2           --------------------->WRI1  --------->At4g35610---------->DOF2 ------->ATHB12   --------->ARR11(3) <---------ARR11(3)        <---------ATERF1(2)  --------->YAB1   atgatttgatcagtgaaaaagatttatcgtctaattctagctctttgattattccgcttattttgccgacagatgataaataacaattacaaaggccaaa  15695400                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                                                                     <---------AHL20(2)                                                                     --------->AHL20(2)                                                                     --------->AHL20(1)               <---------WOX13(1)                                    <---------AHL20(1)             <---------WRKY18(1)                                 <---------YAB1            ----------->HVH21                                   <---------AHL20(1)          <---------AtLEC2                                      <---------AHL20(2)          <---------ANAC58                    ----------->GT1   --------->AHL20(2)    <---------AHL20(2)             <---------AHL20(2)       <--------HAHB4   <---------AHL20(1) <---------ANAC58       --------->ANAC58  --------->YAB1   --------->AHL20(1) <---------ANAC58 --------->AHL20(2)   --------->YAB1                          < --->DOF2 <---------ANAC58        --------->AHL20(2)       <---------YAB1 <---------AHL20(2)  ------- xxxxxxxxxxxx>smallRNA(i2)     --------->YAB1--------->ANAC58 <---------YAB1        --------->MYB59 <   gcatatatatttgcatgactgatttcgtttcatttataaaatttaagacggaaattagcctattattataatttattttttgaattttggtccataaata  15695500                                                                               --------->AHL20(2)                                                                         ----------->HVH21                                                                        ------->MYC3                                                                        ------->MYC2                                                                        <-------MYC2                                                                        <-------MYC3                                                                       --------->O2                                                                       <---------ANAC55(2)                                                                       --------->ANAC55(2)                                                                       --------->ANAC55(1)                                                                       --------->ANAC46                                                     --------->TOE2(3) --------->ANAC58                                                     --------->TOE1(3) <---------O2<-----------GT1                                                   <---------ARR11(3)  --------->TGA1a              <           --------->TOE2(3)                       --------->ARR11(3)  <---------TGA1a             --    <---------YAB1                  --------->AHL20(2)  <---------AHL20(2)  <---------ANAC46       <- ---------YAB1           <-----------GT1      ----------->GT1          --------->bZIP60(2)      ----- -->ICU4   --------->TOE1(3)     --------->YAB1   <---------CCA1(2)    ============================== ---------TOE2(3)     <-----------GT1        <---------TOE2(3)         --------->ANAC58         <----   ttaagtttgattaccttcaaaaattttctactctataatcaaatactaatgtaaatcttaaattttgaaaaacacgtgacttaaattacacaatatttcg  15695600  Previous    Next  AGI:  At4g32530.1    Description:  vacuolar ATP synthase, putative / V-ATPase, putative. similar to H+-transporting two-sector ATPase, C subunit family protein [Arabidopsis thaliana] (TAIR:AT2G25610.1); similar to vacuolar membrane ATPase subunit c'' [Citrus limon] (GB:AAO73433.1); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379) Range:  from: 15693120    to: 15695106    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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