Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    --------->ALFIN1                                               <---------AtMYB61                                         <---------ANAC46                                 <---------MYB52(1)  --------->ARR14(2)                                <----------DOF2--------->DAG2                                       - -----------------AGL1          <-------GAMYB---------->DOF2              --------->ANAC46          - ---AHL20(2)        --------->ANAC58  --------->ALFIN1<------ZmHOX2a(2)   --------->ANAC58          - ->AHL20(2)         --------->ANAC58<---------ANAC46 <---------ARR14(2)   --------->ANAC58         --   ttttcgaaataggcatttcaaaacgcatggagagcgttatgtggagggaaaggtggatcagcctcgtttgtaatacaagcccatgaaacatataccatac  15633200                                                                                           <---------ANAC46                      <---------ANAC58                                               <---------AHL20(2)                      <---------AtLEC2                                               --------->AHL20(2)                      <---------ANAC58                                    <---------ARR14(2)                   ------>ZmHOX2a(1)                                      --------->ARR14(2)         <----------DOF2                                                  <---------AGP1   <---------AtLEC2        <---------ANAC58                                                  ------->TEIL     <---------ANAC58        <---------ANAC46                                                  <---------ARR11(3)       --        <---------ANAC58     ----------->GT1                        <---------MYB52(1)     <---------ANAC58 -------->TOE2(3) <---------ANAC58           <---------TOE2(3)  ===================HOX2a_HOX2a     -- -------->YAB1 <---------ARR11(3)     --------->YAB1        ---------->DOF2 ------>ZmHOX2a(2)      <- ------>GAMYB  --------->ARR11(3)    <-------TEIL        --------->AtLEC2 --------->ARR11(3)    <---- ------->MYB46(3) <---------ANAC58--------->ICU4  <---------YAB1<------ZmHOX2a(1)   --------->AHL20(2)   aaccacaattgcttgaaggtccttgcatgcctcgtaatattcatattcaggtataattcatacaaaggacgttatggatcttgtcatttatttgcatgta  15633300                                                                       ----------->GT1                                                                   --------->ATHB12                                                                  <---------YAB1                                                                ------>MYB83                                                         <---------MYB111(1)                                                         --------->MYB46(3)                                                         --------->AtMYB61                                                         <---------MYB46(2)                                                        --------->ANAC58                                                        --------->ANAC58                                                   --------->bZIP60(1) <------MYB83              ----          <----------DOF2                          --------->TGA2(1)  --------------->AtSPL8     <---     -------->P                                    <---------TGA2(1) <---------WOX13(1)         <----    <-----------GT1                                --------->ANAC46-------->HAHB4               <----  <---------MYB52(2)                               <---------bZIP60(1)<---------------AtSPL8    <---- ------>MYB83                                   ----------->TGA1------>MYB46(1)    <---------ARR11(3) ------>MYB46(1)                                ----------->HVH21 --------->ICU4--------->AHL20(2) ------->TOE1(2)                         <---------AHL20(2)------>MYB46(1)      <---------AHL20(2) ------->TOE2(2)                        --------->AHL20(2) ------>MYB83<------MYB46(1)          <---- --------MYB59<---------ANAC58      <---------YAB1----------->STF1<---------ATHB12 --------->ARR11(3) -------GT1   <---------ANAC58      ------>ZmHOX2a(1)  ------>NtERF2<------------CBF --------->TOE2(3)   acctactaacctctttgcttaattttgtgttcacattcctgattaaatcgatgacgacaccaaaccaaatgattggtacaaataaaatcttattagtttc  15633400                                <---------AHL20(2)                                       ----------->GT1                                --------->AHL20(2)                                       <------MYB46(1)                             <--------HAHB4                                            <---------WOX13(1)           --------->YAB1    <---------ICU4                                  ----------->RAV1(2)           --------->AHL20(2)--------->ATHB51                            --------->ARR11(3)      ------------>CBF      --------->ICU4                               <---------ARR11(3) ------------>CBF           <---------YAB1                               <---------ARR14(2) ----------->AtSPL8       <---------ICU4                                 --------->ARR14(2) ------------AtSPL8       --------->YAB1                                 <-----------ARR10      <---- -----ANAC58             <---------ATHB12                     --------->ANAC58        <------------CBF -----ANAC46             --------->ICU4        ------->TEIL ---------->DOF2  --------->At4g35610<---- -----ANAC55(1)          <---------YAB1     <---------MYB52(2)--------->ANAC58       --------->ATHB12 -----ANAC58        --------->YAB1---------->DOF2      <-------TEIL     <---------CCA1(2)<------MYB83   gtgtacaatacaataaaactaagcgtaatcataattaaaagtcaaaacgaaccaaaattcatcaaagcaaaatcaaatcttctgactcgattggtaaact  15633500                      <---------AHL20(2)                      <---------AHL20(1)                      --------->AHL20(2)                      --------->AHL20(1)                   <---------AHL20(2)                  --------->AHL20(2)                  <---------AHL20(2)                          <---------GLK1(1)                 <---------WOX13(1)                           --------->GLK1(1)               --------->ATHB12                 --------->At4g35610               --------->YAB1                   <---------At4g35610   <---------ICU4               ----------->GT1          --------->ICU4     --------->ANAC58        <---------LBD16<---------AHL20(2)<---------ICU4    --------->ANAC58 ------DOF2   --------->ICU4         <---------YAB1        --------->ANAC46 -----DAG2    <---------YAB1       ----------->GT1---------->DOF2    <---------YAB1                 <   tttttggtactggggaatgattaatttattagttagaatgtgattatgtcagcaaagtttcaagaaatctcatcattttgcaaacctctcatataccttg  15633600                                                                                 <-------GAMYB                                                                                <------MYB46(1)                                                                                <------MYB83                                  <---------At4g35610                       <---------MYB46(3)                 <---------WOX13(1)                              <---------KAN4(2)   <---------YAB1      <---------ANAC58            <---------ZAT2              ----------->GT1   <---------MYB46(3)      <---------ANAC58      <------------CBF                 --------->ANAC58 <---------MYB52(1)      <---------ANAC46   ------------>CBF        --------->MYB52(1)         <-----------RAV1(1)   ---   <-----------GT1 --------->ATHB12    --------->LBD16       --------->ANAC58<-------GAMYB     ------ ---------YAB1  <------------CBF  --------->At4g35610   <---------LBD16  <---------WRKY18(1) --------   ttatttttccttggacaagattgatggaacaattgaagctccgaagatggcaaacgactggggaaggaataaacttgactgttggttatgttttgaaaag  15633700                               ------>ZmHOX2a(1)                           <---------ZAT18                         <---------MYB52(1)                        --------->LBD16                      ------>ZmHOX2a(2)                                                             <                      ================HOX2a_HOX2a                                                ----       <------NtERF2  <---------LBD16                                                            <---   --------->ANAC58  =================HOX2a_HOX2a     <---------AtMYB61                       -------   --------->ANAC58  --------->ARR14(1)            --------->ALFIN1                      <-------TEIL -------->HVH21      <------ZmHOX2a(2)           <---------At4g35610                     --------->SPL7 --->DAG2           <---------ARR14(2)           <---------ZAT2<-------GAMYB           <---------SPL7 -->DOF2            --------->ARR14(2)        ---------->DOF2 <-----------RAV1(1)    --------->ALFIN1   gtgacaggcctcgttctcactggatccggtgtcctcaatacccatggagaaagctggtggtcttctgttgctctccaatctcgaccagtggtacgttgaa  15633800                                                                                           --------->AHL20(2)                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(2)                                                                                       <---------AHL20(2)                                                                                       --------->AHL20(2)                                                                                     --------->AHL20(2)                                                                                     <---------AHL20(2)                                                                                   --------->AHL20(2)                                                                                   <---------AHL20(2)                                                                                 <---------AHL20(2)<-                                                                                 --------->AHL20(2)--                                                                               <---------AHL20(2)----                                                                               --------->AHL20(2)<---                                  --------->YAB1                             --------->AHL20(2)<----- -------TEIL           <---------TOE2(3)                     <----------DOF2 <---------AHL20(2)------ ----->At4g35610      ---------->DOF2                     <------ZmHOX2a(1)--------->AHL20(2)<------- ------At4g35610 <---------ARR11(3)          <---------AHL20(2)            <---------AHL20(2)-------- --->DOF2        --------->ARR11(3)          --------->AHL20(2)          --------->AHL20(2)<---------AHL20(2)   gctgcatattcaacatgtagattttaaagtatgcattaatagaacatttattttctgtgaggactttaagaacatatatatatatatatatatatatata  15633900        ------->TEIL     --------->ANAC58     --------->ANAC46     --------->ANAC58  --------->ARR14(2)                                                  <---------RVE1(1)  <---------ARR14(2)                                       --------->ATERF1(2) --------AHL20(2)                                          <---------ATERF1(2) ------->AHL20(2)                                        <---------ZAT18 ----->AHL20(2)                                     <---------ANAC58  <---------CCA1(1) ------AHL20(2)       <---------ZAT6       <---------AHL20(2)        <---------ARR11(3) ----AHL20(2)     <---------ANAC58        --------->AHL20(2)       ----------->ARR10 --->AHL20(2)     <---------ANAC58    <---------YAB1<---------ANAC58 --------->ARR11(3) --AHL20(2) --------->ARR11(3)       <---------TOE2(3)   --------->ZAT14                        <---- ->AHL20(2) --------->AHL20(1)      <-----------GT1 <---------ANAC46 <---------GLK1(2)     <---------AHL20(2)   tatatatacgcacatatattgctagtattatctacaatttacgatttattttttgcttgtgcaggcagtaagattttttggatgccaaaacattttatat  15634000                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                                                                      <---------ARR11(3)                                                                     <---------CCA1(2)                        --------->ANAC58                      <---------DAG2                        --------->ANAC58                      <----------DOF2             <------ZmHOX2a(2)      <-----------------AG ------->GAMYB--------->ARR11(3)            --------->AGP1         --------->MYB52(1)   --------->ANAC58                ------->PIF5           --------->At4g35610  --------->ANAC55(2)     --------->ANAC58                <-------PIF5           <---------At4g35610  <---------ANAC55(2)     --------->ANAC46          <---------WOX13(1) -----AHL20(2)          --------->ANAC46             --------->MYB46(3)      <---------At4g35610   aatggattaactcagatcaatagtccaaggaatcacataacgattttggatagcaacaacgcaactttatcaaatcttcatctaattgcccctgcaagta  15634100  Previous    Next  AGI:  At4g32378.1    Description:  unknown protein Range:  from: 15633118    to: 15633228    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g32380.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G32375.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62750.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 15633647    to: 15635473    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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