Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                               <---------AHL20(2)                                                                             --------->AHL20(2)                                                                        <---------AHL20(2)                                                                        --------->AHL20(2)       ---------->DOF2                                              --------->ATHB51 --------->DOF2                                                     --------->AHL20(2) ---->ZAT2                                                         <---------YAB1 -----ZAT2                 ---------->DOF2  --------->ARR14(2)     --------->ICU4 ---->At4g35610        --------->TOE2(3)    <---------ARR14(2)   <---------ICU4        ----------->GT1 -----At4g35610 <---------TOE2(3)           --------->GLK1(2) --------->bZIP60(2)     ------->TEIL --At4g35610   ---------->DOF2             <---------GLK1(2)  --------->ANAC46     <---------YAB1   ctgaaagaaaaaagcattaaagaaacattaaaagttttttttcaagaatctgtttccagtttccacatcattatttaaattaaacatgaatgtgaaatat  15625200                                                  <---------YAB1          <---------YAB1                                                 --------->AHL20(1)      --------->AHL20(1)                                               <---------YAB1          <---------YAB1                                              --------->AHL20(2)      --------->AHL20(2)                                              --------->AHL20(1)      --------->AHL20(1)                                             <---------ICU4 <---------ARR11(3)                                    --------->GLK1(2)       --------->GLK1(2)                                    --------->ARR11(3)      --------->ARR11(3)                                    <---------ARR11(3)     --------->CCA1(1)  --------->AHL20(2)                                   --------->RVE1(1)  <---------AHL20(2) <---------AHL20(1)                                   --------->CCA1(1)  --------->AHL20(2) <---------AHL20(2)           --------->HSFB2a(2)--------->AHL20(2) <---------AHL20(2)  <---------ICU4           <---------HSFB2a(2)<---------AHL20(2) <---------AHL20(1) --------->ICU4          ---------  --------->WOX13(1)     <-------TEIL       --------->ICU4 --------->RVE1(1)  <---------AHL20(2)   aggtcaattagttctgaaacaaatagattcatttaaaaaatctctaaatattatatttaaaaaatctctaaatattatatttaaaaaataaaactaaagc  15625300                  <---------AHL20(2)           <---------AHL20(2)                    --------->YAB1             --------->At4g35610           --------->AHL20(2)                <---------AHL20(2)             <---------At4g35610      <-----------GT1                   --------->REM1(2)            <---------YAB1    <-----------GT1                   --------->LBD16             <---------AHL20(2) <---------ICU4  --------->AHL20(2)  <---------ANAC46             <---------YAB1 <---------AHL20(1)                  <---------ANAC58            <---------AHL20(1)           <------ --------->ARR11(3)                  <---------ANAC58        <---------AHL20(2)           <---------YAB1 <---------ARR11(3)            <---------ANAC55(2)          --------->AHL20(2)      --------->ARR11(3) --------->AHL20(1)            --------->ANAC55(2)          <---------AHL20(2)      <---------ARR11(3) ->DOF2  <----------DOF2 ------------>CBF<---------CCA1(2)  --------->AHL20(1)     --------->YAB1   <   taatattttcactttaattttaaatttctcaatacttatccgtgtatattatcaagatgaaatttaatattattagtcatctaaatgatattatcaaagg  15625400                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                           <------------CBF                      ----                                                      ---------->DOF2                            <---                                              --------->ANAC55(2)                         -----------                                              --------->ANAC55(1)                         --------->AHL20(2)                                              --------->ANAC58                      ------------>CBF- ------->TEIL               <---------ICU4    --------->ANAC58               <---------ALFIN1    <--- ---TOE2(3)                 --------->ATHB51  <---------ANAC55(2)         ------->GAMYB   <---------AHL20(2) ---------CCA1(2)       <-------TEIL<------------CBF--------->YAB1       --------->MYB46(3)    ------   ttgtatctcttagaactaaaactaagttcataatttcgaattgttgacaagtaatcaaaagtattgtatgactcaacctccaactcaacaatataaatag  15625500         <---------YAB1         --------->ICU4 ------>ZmHOX2a(1) ---->ZmHOX2a(2) ----ZmHOX2a(2) ------ARR14(2)                            <------------CBF ----->AGP1                            <---------HSFB2a(2) ----->ARR14(2)                        --------->HSFB2a(2)                           <---------TOE2(3) ----->ARR11(3)                       <---------LBD16                <---------AHL20(2) ------ARR11(3)<---------YAB1        ------>ZmHOX2a(1)     <---------AtLEC2  <-----------GT1 >TBP <---------ATHB12       <-----------GT1    <---------GLK1(1)    --------->AHL20(2) -------->TOE2(3)<------------CBF ------>MYB83--------->ATHB12  ------------>CBF  <---------YAB1 ------GLK1(2)--------->AHL20(2)  ------>MYB46(1)    ------>ZmHOX2a(1)<---------AHL20(2) ----->ARR10  <---------AHL20(2)<---------MYB59 --------->GLK1(1)    <---------AHL20(1)<------ZmHOX2a(1)   atcctcaaatcaagattaaaattgtgagacattaccttcctctggaattgatttcctctgtgcatgttcaattttttttttactatgaaggattttaaaa  15625600                                                                                                    -                                                                                                    <                                                                                                    -                ----------->GT1                                                            <---------ATHB12               <---------YAB1                                                  --------->ATHB12    --             --------->YAB1                                                    --------->ATHB51    <-            <---------YAB1                                                    <---------YAB1  -------          --------->YAB1             --------->ARR14(2)                    --------->AHL20(2) -------        <---------WOX13(1)           <---------ARR14(2) --------->GLK1(1)  <---------AHL20(2) -------     <---------YAB1     --------->YAB1         <----------ID1        <---------TOE2(3)   <---------ICU4   cattgttctcattgattatagttatatcatactatttcgaatatggagaaggccaaagaattctaagcatcaaggattttattattgatactaatcacac  15625700        --------->KAN4(2)       <---------KAN4(1)                                             <---------AHL20(2)      <---------YAB1       --------->TOE2(3)                         --------->ATHB51    --------->YAB1   <--------HAHB4                                  --------->AHL20(2) ------->ATHB1       --------->YAB1                                  <---------ICU4 ---------ICU4       <---------ICU4                   --------->YAB1 <--------ATHB1 -------->ATHB12    --------->ICU4                   <---------YAB1 --------->ICU4 ------->ICU4       <---------ATHB12             <---------GLK1(2)  <---------ATHB51 --------YAB1       <---------YAB1           <<<<<<<<<MYB2        --------->YAB1 -->ANAC58     --------->ANAC58              <<<<<<<<<MYB1    <---------HSFB2a(2)              <<<<<< -->ANAC46     --------->ANAC58              <---------MYB52(1)----------->GT1 --------->AHL20(2) -->ANAC58     --------->ANAC55(2)    --------->GLK1(1)    --------->GLK1(2)  <---------ATHB12 <-----   catcattgattattctcaagtaatcattttcttaaaactgatatgcagttagattatcaaaattctagtaataatttccaatgaaatataaaaactatat  15625800                                                                 <----------DOF2                                                               <---------At4g35610                                                               --------->At4g35610                                                        --------->MYB46(3)                                                      ------>MYB46(1)              --------->ANAC58                                                      --------->MYB52(1)           --------->ANAC58                                                      ------>MYB83               --------->MYB52(1)                                                     --------->MYB55(1)      ---------->DOF2                                                    --------->MYB46(3)     --------->ANAC58                                                    <---------MYB55(2)     --------->ANAC58     ---------->DOF2                               --------->ANAC58        --------->ANAC46 <<<<GT-1                      <------ZmHOX2a(1)   --------->ANAC46      --------->CCA1(2) ----ARR11(3)                 --------->ICU4       --------->ANAC58   <---------ZAT6           <-----   cattttttaaaggcatttcaagaagcatggaaaggattatgcgaagatgaaacacccaacggctcagctttagtgatacgaaagaacgaaacatatactt  15625900                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                            <-----------ARR10                                       --------->AGP1                            --------->ARR14(2)                                      <---------ARR11(3)                            ------->TEIL                                            <---------ARR14(2)                            <---------ARR14(2)                                      --------->ARR14(2)                            --------->ARR11(3)                                      --------->ARR14(3)                            <---------ARR11(1)                                      <---------AGP1                            <---------ARR11(3)                                      --------->ARR11(3)                           <---------CCA1(2)                                        <---------ARR14(3)                           <---------ARR14(1)                                  <---------AHL20(2)----                         --------->ANAC55(2)                                ------->TEIL        -----            ----------------------->TaNAC69(2)                           <---------ANAC46       -----          <---------DAG2 <---------ANAC58                     --------->ARR11(3)   --------->RVE1(1)   --------->YAB1        <---------ANAC55(2)          <----------DOF2    ----------->GT1        <----   ------->GAMYB       --------->AtLEC2           <---------MYB52(1)<---------ANAC55(2)        ------  --------->MYB46(3)<-------TEIL        <-------TEIL<-------TEIL    --------->ANAC55(2) --------->AtLEC2 -----DOF2<----------DOF2<---------ANAC58--------->YAB1       <---------ARR11(3)---------->DOF2------   tacaaccatcaacttttcgaggtccatgcgtatcttctaacattcatattcaggtacttttgaagatgttaagtgatgtatataaagatcttgcaaaaaa  15626000                                                       --------->AHL20(2) <----------DOF2                                   <---------AHL20(2)           --------->AHL20(2) ----->RVE1(1)                                     --------->AHL20(1)           <---------AHL20(2) ---->GLK1(2)                                      <---------AHL20(1)      <---------AHL20(1) ---->ARR11(3)                   ----------->GT1   --------->AHL20(2)      --------->AHL20(2) -----ARR11(3)              ---------->DOF2   <---------AHL20(2)           <---------AHL20(2) --->RVE1(1)         <---------YAB1           <---------AHL20(1)    --------->DAG2 --->CCA1(1)        <---------TOE2(3)         --------->AHL20(2)   ---------->DOF2 <---------TOE2(3)   tctctttgcttcaaaacatgtttatgttaacaaagttgtaagaagtattttattttattaaacaaaaaaaaaagtattttattttaatgaatagatagat  15626100  Previous    Next  AGI:  At4g32370.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G32375.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABO81149.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 15625564    to: 15627523    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version