Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------ANAC58  <---------ANAC58  <---------ANAC46 <------NtERF2 ---------RAP2.3(1) ------->ETT(1) --------RAP2.3(3) --------DEAR3(1) --------DREB2C(2) --------DEAR4(1) --------At1g77200   <-------TEIL                                                             <------ZmHOX2a(2) -------------------WRI1                <---------AHL20(2)                                   ------->TEIL -------ORA47(1)    --------->ARR14(1)  --------->AHL20(1)                                   <------- -----MYB46(3)     <---------GLK1(2)    --------->AHL20(2)                                   -------- ---ANAC58         --------->ARR14(2)   <---------AHL20(1)                              <---------AtLEC2 ---ANAC58         <---------ARR14(2)  --------->AHL20(2)                          <----------DOF2 -GAMYB <---------AtLEC2    --------->AHL20(2)                                  <-----------GT1------ >MYB55(2)         --------->ARR11(1)  <---------ATHB12                         <---------AHL20(2) -MYB46(3)--------->AtLEC2  <---------AHL20(2)      <---------AHL20(2)       ----------------------->TaNAC69(2)   gtcggcgtgttcatggaaaaagattcgtttttaaatgcccaataaatttgagaaaaaattgccaacttgtttatgagcttattttctttttcatggatcc  15493700                                                              <---------LBD16                                                            <---------ARR14(2)                                                            --------->ARR11(3)                                                            <---------ARR11(3)                                                            --------->ARR14(2)        <---------ANAC46                               --------->AHL20(2)      <---------ANAC46                            <----------ID1   <----------DOF2                                ----------->GT1            --------->ARR11(3) --ARR14(2)              --------->AHL20(2)     ---------->DOF2              <---------ARR11(3) ----- ->ARR14(2)<---------ZAT14                --------->AtLEC2 --------->CCA1(1)--------->CCA1(1)  ------ >ZmHOX2a(2)       --------->AHL20(2)     ----------->GT1  --------->RVE1(1)--------->RVE1(1)  ------   caagtcttttgtgtatagagattaaaaaaaaatgacattccttcatgtaaaaaagaaaaaaatatctgggttttaaaaatatctacaatgagtttaatgg  15493800             --------->ATHB51             <---------ICU4           ----------->GT1                        <---------ICU4            --------->ICU4       ---------->DOF2       <<<<<<<ZML2           --------->ATHB12            <---------YAB1     <---------MYB59      <---------HSFB2a(2)      -------->ATHB1 ---->At5g28300              --------->ARR11(3)     --------->HSFB2a(2)     <---------ATHB12 ----->GT1--------->YAB1     <---------ARR11(3)  --------->ANAC46     --------->ANAC58       -------- --->YAB1<---------YAB1  ---------->DOF2     <-----------GT1          --------->ANAC58--------->ANAC46   taaatatacttatcataatttggagaataaagacctaaagaagaaaattacactctagaacagaagttttgtaagcaaatcattgctcacaaaacttgtg  15493900                      <------MYB46(1)                      <------MYB83   <---------YAB1                     <---------TOE1(2)          <---------MYB46(3)                 <------------CBF                    <--------P    <---------AHL20(2)      <----------DOF2    ---------->DOF2 --->GT1<-----------GT1    ----------->GT1     <---------TOE2(3)        --------->AHL20(2)   aattacagaattacaggctcttgtaggttgagttattttatgcttcattttggttacaggctttatgttgacattaaaacaaagagattgaagtagagtc  15494000                         --------->AHL20(2)                  <---------AHL20(2)                  --------->AHL20(2)                  ----------->TBP                ----------->TBP                  <------------CBF              --------->AHL20(2)               --------->ARR11(3)              ----------->TBP                  --------->AHL20(1)             --------->AHL20(1)          <---------AHL20(2)             <---------AHL20(1)          --------->AHL20(2)            --------->AHL20(2)       --------->AHL20(2)         ----------->GT1          --------->AHL20(2)         <---------AHL20(2)        ----------->GT1    ----------->GT1        --------->AHL20(2)<---------AHL20(2)   <---------AHL20(1)      *TSS     ---------->DOF2   caaaaaaaaaaaaaatatatataaatataaaattcaagattaattaaaaaatattggtcttcagagagataaataactaggggaaagagaaaacagtctt  15494100                                                                                      <-----------HVH21                                                                                     --------->bZIP60(2)                                                                                   <---------ALFIN1                                                                                 ------>NtERF2                      <------ZmHOX2a(1)                                         --------->ANAC46                     --------->ANAC58                                           <---------ETT(1)                     --------->ANAC58                                           ----------->HVH21  --                    <---------TOE2(2)             <---------ALFIN1          ------>ZmHOX2a(1)     <--                  --------->TOE1(2)            <---------ALFIN1          ------>MYB46(1)        -----               ---------->DOF2              --------->PCF2           --------->ARR14(3)       <------ZmHOX2a(2)             ---------->DOF2              --------->ZAT2  ------>ZmHOX2a(1) =========================HOX2a_HOX2a        <------ZmHOX2a(2)                 <---------At4g35610        <---------ARR14(3)       <------        =====================HOX2a_HOX2a  --------->At4g35610        --------->ARR11(3)--------->ZAT14       <---------ARR14(2)             <-----------GT1 ------>ZmHOX2a(1)  ------>MYB83--------->ANAC46       --------->ARR14(2)        <---------ANAC46<---------ZAT2      <---------ARR11(3)<---------ZAT14   ctcttctccgatcccaaaaacgcaggaaaacaatgtcgtttaacagctcccacctccttcctccacaagaagaccttcctctccgacacttcaccgatca  15494200                    <-----------TGA1                    <-----------HVH21                   --------->bZIP60(2)                  <------NtERF2                  --------->At4g35610               <---------At4g35610               --------->LBD16               --------->ABI4(1)               --------->At4g35610                                           ------>MYB46(1)               ------>NtERF2                                               <---------ALFIN1               <------NtERF2                                               --------->AtMYB61              --------->DEAR3(1)                                          <---------MYB55(2)             --------->RRTF1(1)                                           --------->MYB46(3)            <---------ATERF1(1)                                          -------->P            --------->At4g35610                                          ------>MYB46(1)            --------->LBD16                                              ------>MYB83               -            ------>NtERF2                                          --------->AtMYB61                =           --------->DEAR3(1)                       ------>NtERF2 --------->MYB46(3)               <-           --------->ANAC46                        --------->ANAC46------->GAMYB                   ==        ------->GAMYB                              --------->DREB2C(2)   --------->SPL7           <--        --------->AtMYB61 --------->ZAT14         --------->MYB46(3)   <---------MYB111(1)  ---------       --------->MYB46(3) <---------ZAT14        <---------At5g28300 ------>MYB83           <--------      -------->P<------NtERF2                 <-----------HVH21 <---------ALFIN1          --------->LBD16 ------->YAB1--------->RAP2.3(1)           <---------ANAC58   ------>ZmHOX2a(1)         <---------LBD16 -------ATHB12--------->RRTF1(2)           <---------ANAC58  --------->TOE2(3)    -------->P<-------- ---->WOX13(1)--------->RAP2.3(2)     --------->AtMYB61   --------->ARR14(2) ------>MYB83<---------ANAC46 ---ATHB12 <---------ALFIN1        <---------ALFIN1--------->DEAR3(1)------>MYB46(1)--------->ZAT6---   atcacagcaacctccgccgcagcgtcacttctctgaaacaccttcgcttgtcaccgccagtttcctcaacctccctaccacccttaccactgcggattcc  15494300               --------->ANAC58               --------->ANAC58               --------->DEAR3(1)               --------->ANAC46              --------->ANAC58              --------->ANAC58             --------->SPL7            --------->ANAC46            <---------ALFIN1        ------>ZmHOX2a(1)       <---------ALFIN1 ----->ZmHOX2a(2) ==============HOX2a_HOX2a -----ZmHOX2a(2)                                   --------->ANAC46 ==============HOX2a_HOX2a           <---------ANAC46 -------ARR14(2)     ------->GAMYB<---------MYB52(1)           <----------DOF2             <--------- >ARR14(2) --------->LBD16       <-------GAMYB     --------->ANAC58          <-------TEIL  ---------- -ARR14(2)--------->ANAC46      <---------ANAC58   --------->ANAC58         --------->AtLEC2 -GLK1(2)<---------LBD16        <---------ANAC58 <---------ALFIN1         --------->At4g35610  <----- ------>ARR14(2)  --------->MYB52(1)<---------At4g35610------>NtERF2      --------->GLK1(1)<---------   gatctcgctcctccgcaccgcaacggagacaattccgttgctgatacaaacccacgctggctctcctttcattcggagatgcaaaatactggagaagtac  15494400                                                                                         <------NtERF2                                                                                         --------->ATERF1(1)                                                                                        <---------ATERF1(1)                                                                                        ------>NtERF2                                                                      <------NtERF2     <---------ORA47(2)                                                               <---------ARR14(2)       <---------RAP2.3(1)                         --------->DEAR3(1)                    --------->ARR14(2)       <---------ERF1                       ------->GAMYB                          --------->ATHB12          <---------DEAR4(2)                      --------->DEAR3(1)                --------->At4g35610            <---------RAP2.3(3)                      --------->ANAC46                <------ZmHOX2a(1)                <---------RAP2.3(2)                    <---------DOF5.7(2)          <---------REM1(1)  <---------ANAC46   <---------DEAR3(1)            <---------LBD16                    <-------GAMYB ----------->ARR10      --------->DAG2 ------AtSPL3      <---------WRKY12           <---------DEAR3(1)   <---------LBD16 ---------->DOF2 ----->AtSPL3      <---------WRKY45        <---------DEAR3(1)<---------YAB1     <----------DOF2 --TEIL   --------->ETT(2)   ----------->GT1 <------NtERF2   --------->ICU4   <---------STY1(2) ------AtSPL8      <---------WRKY38(1)--------->ARR14(2)----------->GT1  <---------ZAT6<---------RAP2.6(2)   gttctgaagttatcgacggagtcaacgccgatggtgaaacgatactcggcgttgtaggaggtgaagattggcggagtgctagctataaggcggcgatttt  15494500                                  <-------MYC3                                  ------->MYC3                                  ------->MYC2                                  <-------PIF5                                  ------->PIF5                                  <-------MYC2                                 <---------O2                                 --------->O2                                 --------->TGA1a                                 --------->ANAC55(2)                                 <---------ANAC58                                 <---------TGA1a                                 <---------ANAC55(2)                                 =====================bZIP_DOF                                 <---------ANAC58                                 ========================MYC_MYB                                 ========================MYC_MYB                                 <---------bZIP60(2)                                 ==========================MYC_MYB                            --------->At4g35610                               <------ZmHOX2a(1)                            <---------At4g35610                             <---------TOE1(2)                           <---------RAP2.3(1)                             --------->LBD16                          <---------RAP2.3(2)                              <---------LBD16                          <---------ANAC58                             --------->GLK1(2)           <-                          <---------RAP2.6(2)                         <---------ARR14(2)        <----                          <---------ANAC58                      <---------WRKY18(1)            <-----                          <---------RAP2.3(3)        <---------ANAC58 <---------GLK1(2)     ---------                   <---------GLK1(2)                 <---------ANAC58 --------->ARR14(2)  <---------At4g35610                  <---------At4g35610             <--------P   --------->WRKY38(1)        --------->At4g35610                  --------->At4g35610 <---------ANAC58         ----------->HVH21          --------->ZAT2                  --------->HSFC1(2)  <---------ANAC58         --------->WRKY12<---------ARR14(2)  --                  <---------HSFC1(2)  <---------ANAC46         --------->WRKY45--------->ARR14(2)  <-              --------->ANAC46----------->HVH21  <-------GAMYB<---------MYB52(1) ------>ZmHOX2a(2)---         <---------SPL7  <---------LBD16   <----------DOF2   <-------GAMYB<---------ANAC46<---------ZAT2   aagacatccgatgtacgagcagcttcttgcggctcacgtggcttgccttagggttgcgactcccgttgaccagattccgaggatcgatgctcagctcagt  15494600  Previous    Next  AGI:  At4g32040.1    Description:  KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription factor. Identical to Homeobox protein knotted-1-like 5 (KNAT5) [Arabidopsis Thaliana] (GB:P48002;GB:O49387;GB:Q548P2); similar to KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) [Arabidopsis thaliana] (TAIR:AT5G25220.2); similar to KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G25220.1); similar to class II KNOX homeobox transcription factor [Medicago truncatula] (GB:ABO33482.1); contains InterPro domain KNOX1; (InterPro:IPR005540); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); con Range:  from: 15494071    to: 15496362    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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