Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   <------ZmHOX2a(1)                <---------YAB1      --------->ANAC46             --------->TOE1(2)      --------->ANAC58      <---------ANAC58              --------->ANAC58      <---------ANAC46             --------->ZAT18      <---------ANAC58         <-----------GT1                                                   <---    <---------YAB1            ---------->DOF2                   <---------ANAC46   <---------At4g35610   aaactgatgcttgaaactaggattggaacctattaagcacacaatgtacaattgcaagaagaagtagtgtgtttttagagcctacagatgtcaaaatcag  15469500                                                                         --------->ANAC58                                                                         --------->ANAC46                                                                     ------>ZmHOX2a(1)                                                                    <---------SPL7                                                                    --------->TOE1(2)                                                                <---------ANAC55(2)                                          --------->DAG2        --------->ANAC55(2)                                         ---------->DOF2   --------->WOX13(1)                               <---------TGA1a           ===================HOX2a_HOX2a                               --------->O2  <---------ANAC58   --------->ANAC58                               <---------O2  <---------ANAC58   --------->ANAC58    =====================================bZIP_DOF        <------ZmHOX2a(2)  <---------------AtSPL8  -    ---------->DOF2            --------->TGA1a         <------ZmHOX2a(1) --------->ANAC58      <----- ------ZAT6                    =====================bZIP_DOF <---------ATHB12                --------   tgatagaaaagaacagctatttgtttcacagacatgtgagacataaagcttgctctaggatcaatcacgtcctacgagcaagtacaaacatttgtaaatc  15469600                                                                    <---------HSFC1(2)                                                                    <---------HSFB2a(1)                                                     --------->ARR11(3)                                    --------->MYB46(3)              --------->HSFB2a(1)             <         ---------->DOF2     <---------ANAC58        --------->GLK1(2)                           <--- -------->YAB1               <---------ANAC58        <---------ARR11(3)  <-------GAMYB           <--- ----ATHB12 ----------->GT1  <---------ANAC46   --------->LBD16     --------->HSFC1(2)           <--- ->WOX13(1)--------->DAG2 <----------DOF2  --------->ARR14(2)    <------ZmHOX2a(1)  --------->ICU4  -   aataagagtacaaaaggttatatcagagctttcgtagaacagccatttcccccaaaatcttacaacaggaaatttcgttgtaagaaatgttgacttcttg  15469700                                   <---------AHL20(2)                                   --------->AHL20(2)                                --------->AHL20(2)                               <---------ATHB12         ----------------------->TaNAC69(2) ---------ZAT14         ----------->HVH21 <---------ANAC58       <---------ICU4 ------ANAC58         <---------ANAC55(2) <---------ANAC58       --------->YAB1 <------NtERF2   ----- ------ANAC46         --------->TGA1a   <-----------GT1          --------->ATHB12           --------- ------ANAC58         --------->ANAC55(2)<---------TOE2(3)     --------->ARR11(3)           --------- -------->ZAT14--------->TOE1(2)--------->YAB1      --------->REM1(1)          --------->RAP2.6(2) --   agtgtagaagtgtcaaacttgggaacgtgaccaataaaaaattgacgtttcgctacaagactaaaaatcatgggccttgggccgaaacatgaaacctaaa  15469800                                                                              <------NtERF2                         ---------->DOF2                            <---------TOE2(3)                    ------------>CBF                                --------->DAG2                    --------------->AGL15                     <---------------AGL15   <-------GAMYB    ==========================================================MADS_MADS ----->DOF2         <---------------AGL15                     --------------->AGL15 >TOE1(3)      ---------->DOF2     <---------ZAT14      <-----------GT1  --------->MYB52(2) >TOE2(3) <---------ANAC55(2)     <----------DOF2      <-----------GT1 <--------P ---------->MYB.PH3(1)  <---------ATHB12 <---------TOE2(3)   <-----------------AGL3             <----   aagactgttatcacataaaaagcccaataaagaagactttactagggtttcatcgttttaacttcttaaaaaggttagtcgcctcttcttcgtatttttt  15469900                       --------->ANAC58                 --------->GLK1(2)                 <---------ARR14(2)                 <---------ARR11(1)                 <-----------ARR10                 ------->TEIL                 --------->ARR14(2)                <---------CCA1(2)          <---------At4g35610          <---------ZAT2                                                              --------->MYB52(2)          --------->ZAT2                                                            <---------MYB52(1)          --------->At4g35610        <--------P                                   --------->MYB52(2)       --------->At4g35610          <-------GAMYB   --------->ANAC58              <---------MYB46(3)   <----------CDC5     --------->ANAC58--------->MYB52(2)         <---------ICU4<---------MYB52(1) *TSS  <---------At4g35610         ----------->GT1  --------->ANAC58    <-----------GT1 -------GT1     <---------ARR14(1) <---------MYB46(3)         <---------AHL20(2)---------------------   gcctcgctgagcagctgcgaatctcacgacttcaagatggttagtctcgctctctcgcaaatttttaatctttgttacaatcgtttgttagtttcgcctg  15470000                                            --------->ANAC58                                 <------NtERF2                                            --------->ANAC58                                 --------                                   <---------ARR11(3)                                       <--------                                 --------->MYB59                                            <--------                             --------->MYB52(2)                                            --------->DEAR3(1)     --------->ATHB12        --------->MYB46(2)                      ----------->GT1     --------->At4g35610    --------->ICU4--------->ATHB12 --------->ARR11(3)             <-----------RAV1(1)   ------->GAMYB   <---------WOX13(1)        --------->MYB111(1)            --------->ATHB12           --------->MYB46(3) >WRI1   ---------->DOF2   <---------MYB52(1)              <---------YAB1             XXXXXXXXXXXXXXX   tttggattgattaaagagtttgatttgttgttagttagatatcgaaacgaaattagtgattttgatttgtgttggaaaaatgaaatgtaacagccgtcgc  15470100                                                                               --------->At1g77200                                                                              --------->DEAR3(2)                                                                             --------->SPL7                                                                         <---------------AtSPL3          --------->ATHB12                                         <-------TEIL<---------ETT(1) ->ATERF1(1)                                                     <---------GLK1(2) ---HVH21<---------YAB1                                          --------->ARR14(2)             <---- -ATERF1(1)                                                      <---------ARR14(2)     --------->AtMYB61 XXXXX>MIR780.1             ---------->DOF2               ------>ZmHOX2a(1)<---------SPL7  <---------   acaagtcgtttatgattaagaagaagttgggaaagaagatgagacagaacaggcctattcctcactggattcgtcttcgtaccgacaacaccatcaggtt  15470200                                                                      --------->MYB52(2)                                                                      <---------MYB46(3)                                                                    <---------MYB52(1)                                                       <---------ARR11(3)                                                       <---------AHL20(1)                                                       --------->AHL20(1)                                           --------->YAB1         <---------ZAT6                                        --------->WOX13(1)  <---------AHL20(2)                                       ------>ZmHOX2a(2)<---------AHL20(2)                                     --------->AGP1   --------->CCA1(2)   <---------YAB1                    <---------ARR11(3)--------->ARR11(3)               --------->HSFB2a(2) ---TEIL                         <---------LBD16     --------->ARR11(3)      ------>ZmHOX2a(2) --RAV1(2)                   --------->KAN4(2)       <---------ARR11(3)<-------GAMYB    <---------HSFB2a(2)   cgactattcttgtttttttttgtctattgtttattccctgatctatcaaattgaagatatatttagttgtgttagttgatcgatttagttctaaaactga  15470300                                                        --------->ZAT2                  <---------------AtSPL8                <---------ZAT2         <-------GAMYB                         <------NtERF2        ----------->GT1                      <---------ANAC58 <---------ARR14(2)    ---------->DOF2        <---------MYB46(3)                   <---------ANAC58 --------->ARR14(2)  --------->HSFB2a(2)     <---------ANAC58                        <---------ANAC46 <---------GLK1(2)   <---------HSFB2a(2)     <---------ANAC58                --------->ANAC58  ------>MYB83        --------->ANAC58     <---------ANAC46 <-------TEIL   --------->ANAC58  ------>MYB46(1)     --------->ANAC58    <-----   tttcattgtgtggttaatttcaggtacaatgccaagcgcaggcactggcgtagaaccaagctcggattctaagtgataagccttctaaaagagtcttctt  15470400  Previous    Next  AGI:  At4g31985.1    Description:  60S ribosomal protein L39 (RPL39C). Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39B) [Arabidopsis thaliana] (TAIR:AT3G02190.1); similar to unknown [Populus trichocarpa] (GB:ABK93945.1); contains InterPro domain Ribosomal protein L39e; (InterPro:IPR000077) Range:  from: 15469901    to: 15470565    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version