Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           <---------------AGL15                                    -------->HAHB4                                    <---------ICU4                                    <---------AHL20(2)                       <---------YAB1                                   <---------YAB1                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   --------->ICU4                          <---------ICU4     <---------DAG2         --------->AHL20(2)                             --------->YAB1     <----------DOF2        <---------AHL20(2)  ----------->GT1      <---------AHL20(2)  <-----------GT1       <---------AHL20(2)  --------->ARR11(3)  <---------AHL20(2) ----->AHL20(1)         --------->AHL20(2)  <---------ARR11(3)  --------->AHL20(2) ------AHL20(2)    <---------ARR11(3)    --------------->AGL15  <---------AHL20(1) ----->AHL20(2)    --------->ARR11(3)   <-----------------AGL3  --------->AHL20(1) >AHL20(1)        --------->YAB1<---------AHL20(2)             --------->AHL20(2)       <---------ANAC58 -AHL20(1)      <---------TOE2(3)  <---------ATHB51            <---------AHL20(2)     --------->ARR11(3) >AHL20(2)     --------->YAB1   --------->AHL20(2)       --------->YAB1   <---------ATHB12     xxxxxx -AHL20(2)   <---------AHL20(2)--------->AHL20(2)       <---------YAB1--------->AHL20(2)<---------ANAC58   aaaataactttttgttttaatgatatttaaatatttaattattcaatatatggttattttgataattttattttaaatcatcatcgaatttcttgttgaa  15431100                     --------->MYB52(1)                     <-----------GT1                  --------->YAB1                  --------->TOE2(3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            --------->ANAC55(2)            --------->ANAC58            --------->ANAC58      <-------TEIL           ------>NtERF2      <---------------AtSPL8           --------->LBD16    --------------->AtSPL8          <---------ANAC46    --------------->AtSPL3                                   --------->RAP2.6(2)         <---------LBD16      --------->MYB59                                          ----------->RAV1(1)        <---------At5g28300   <---------TOE2(3)                           <---------ICU4         <---    <---------ICU4--------->TOE1(3)                                   --------->HSFB2a(2)        ----   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                              <---------HSFB2a(2)      ------ xxxxxxxxxx>smallRNA(s)<------------MYB.PH3(1)              <------ZmHOX2a(1)       --------->ANAC46   atttcaaaattgccgcgtaatcttaacggttttaggtacaatttcattcacaaaaaccactaggactcacttctaaaaatttctcacagccacaactaca  15431200                                    <------------CBF                                             ----                               <----------DOF2                                               --------                      --------->AHL20(2)                                            ---------->DOF2--    <-----------------AGL1    <---------DAG2                                       <---------AHL20(2) ------At4g35610      <---------AHL20(2)              --------->DAG2              <---------AHL20(2)- ----->At4g35610     --------->AHL20(2)             ---------->DOF2     ---------->DOF2----------->GT1 --->REM1(1)----------->GT1<-----------GT1<------------CBF  <---------ZAT6        --------->AHL20(2)<   tctgcatccccttctggttacaaattaattcacctttacattgaaattgacaaaaaaaggtagtgttatctccataaaacaaaattaaaaggaaataaag  15431300                                                    <---------ICU4      --------->AtMYB61                        ------>ZmHOX2a(1)      <---------ALFIN1   <---------AHL20(2)   --------->TOE2(3)   <-----------GT1     ----------->TBP        --------->TOE1(3)          --------->At4g35610        - ----->YAB1          ----------->TBP       --------->ARR14(2)            <---------At4g35610        - -->DOF2             <---------AHL20(2)    <---------ARR14(2)     <---------ANAC46                  - ------->ICU4        --------->AHL20(2)   <---------CCA1(2)       <---------ANAC58                 -- -------->YAB1     ----------->TBP      --------->YAB1            <---------ANAC58                 -- ---------ICU4   --------------->AGL15 <---------YAB1  <-----------GT1 <-----------GT1             <-   aataatgaccactccctctctatatatataaacagacgtttatcatatccttaagaatcacccctcttgcgttttagctcccttgcattttcttcatctt  15431400                                   <-----------GT1                                       <-----------GT1      ------>ZmHOX2a(1)          <-----------GT1                                      <---------ICU4     <---------ALFIN1         <---------CCA1(1)                                    --------->YAB1 -------->ANAC58              <---------RVE1(1)   <---------ANAC58           <---------TOE2(3) -------->ANAC46             <---------ARR11(3)   <---------ANAC58         <---------AHL20(2) -------->ANAC58             --------->ARR11(3)<----------DOF2            --------->AHL20(1) ------->ZAT18     <---------ARR11(3)        <---------DAG2   <---------AHL20(2) ------->TEIL     --- ------->SPL7      --------->ARR11(3)     <-----------GT1<---------YAB1   --------->AHL20(2)      --- --------ZAT18     <---------GLK1(2)  <----------DOF2  <-----------GT1    <---------AHL20(2)    <----   gtacgctcctccttggtcttagattttctgagatatttctcttttcactctttcttgttacgattttatctaaaaatttaatgaatcatatttactgacc  15431500                                                                         --------->ANAC58                                                                         --------->ANAC58                                                                    ------>NtERF2                                                                  --------->LBD16 --------->AHL20(1)                                                               --------->MYB52(1) <---------AHL20(2)   <------------CBF                                            ------->TEIL    <---------GLK1(2) --->MYB83<---------AtMYB61                                   <---------ARR14(2)  <---------AHL20(1) --->MYB46(1)                           <-----------RAV1(1)   --------->ARR14(2) --------->AHL20(2) -----MYB59          --------->AtLEC2--------->GLK1(2)<---------ANAC46 ---------->DOF2   aaacacattgttgtggttttttcatgcagagaaatggctaatctgttgcaaaggcttcgtagacgaaccgggccaaagccagattatattgaagacaagt  15431600                                                                                            <--------                                                                                           <---------ANAC46                                                                                    <---------ZAT14                                                                                    --------->ZAT14                                                                                  ------>ZmHOX2a(2)                                                                                 --------->CCA1(2) <-                                                                                 <------ZmHOX2a(2) --                                            <-----------GT1                     <---------ARR11(3) --                                         --------->ANAC58                       --------->AGP1 <-----                                         --------->ANAC58                       <---------AGP1 ------                                       <------NtERF2          <---------ANAC58  --------->ARR14(2) <-                                    <---------LBD16           <---------ANAC58  --------->ARR11(3) --          <-------TEIL           <-----------RAV1(2)     <----------DOF2        <---------ARR14(2)---   tggatgaatacattcgtgaagaacaagttgaagaaacaggcggaagtaaccaggtatgtctttgtcttgttgtgaaattatagatctgcagtgactttta  15431700       ========================HOX2a_HOX2a       ------>ZmHOX2a(2)                                                  <---------MYB52(2) --DOF2================HOX2a_HOX2a                                       --------->At4g35610 --------ICU4                                                     ------>ZmHOX2a(1) ------->ATHB12                                                <------NtERF2 ------->ATHB51               <---------ANAC58       --------->At5g28300 <---------At4g35610        - ----AHL20(2)           ------>ZmHOX2a(1)  <---------ARR11(3)<---------RAP2.6(2)             -------- --->AHL20(2)   <------ZmHOX2a(1)          --------->ARR11(3)<---------ANAC58              <---------At4g35610 --------AHL20(2)    ---------->ID1        <---------GLK1(2) <---------ANAC58              --------->At4g35610 ------->AHL20(2)--------->ARR14(2)      ----------->ARR10   <---------ANAC46 --------->MYB46(3) ---- ------>ICU4 <---------LBD16  <---------ANAC58      <---------ANAC46    ------->TEIL  --------->ARR14(2)   attatttgatccatttcaggattgtcctcttggcgagattgaaaagattttggaccgtgaatggcgtcctactgcatctaacaatccgaattcttctgac  15431800           ------->GAMYB                  --------->ALFIN1         -------->P <---------ANAC58    <---------ANAC46         ------>MYB83                   <---------bZIP60(2)         ------>MYB46(1)         <---------ANAC58        --------->MYB55(1)       <---------ANAC58       --------->AtMYB61       <---------ARR14(2)       --------->DEAR3(1)      --------->ARR14(2)       --------->MYB46(3)      --------->ARR14(3)       <---------MYB111(2)     <---------ARR14(3)                  --------->ZAT14       <---------MYB111(1)     --------->ARR11(3)                  <---------ZAT14                 <-       <---------MYB55(2)      <---------AHL20(1)          <---------ANAC58         --------->ANAC46       <---------MYB46(2)      --------->AHL20(1)          <---------ANAC58         --------->ANAC58 ------>GAMYB       <---------ANAC46  --------->ZAT14  --------->YAB1    ----------->GT1           <- --->HVH21 --------->TOE2(3)   <---------ARR11(3)     --------------->AtSPL8        --------->ANAC58 ----->MYB52(1)     <---------ANAC58  <---------ZAT14 --------------->AtSPL3 <----------TaMYB80    <-   aacgggacaccaaccctagttgtcgtgaaacaatatcttgtgaagtggaaggggttatcgtacttgcactgctcttggtaaattcccagcaatatgcgat  15431900                           <--------HAHB4                           --------->YAB1                                    <---------ICU4              <---------AHL20(2)                                            <---------YAB1              --------->AHL20(2)                                            --------->ICU4          --------->AHL20(2)          <-----------RAV1(1)              --------->ANAC55(2)          <---------AHL20(2) <---------YAB1<---------ANAC58            <---------ANAC55(2)         -- --------ANAC58            <---------ICU4  <---------ANAC58       <---------ICU4                  --- --------ANAC46           --------->ICU4---------->ID1            --------->YAB1                <---- --------ANAC58   <---------ICU4<---------YAB1                   <---------YAB1<---------YAB1   <----   atcgtgttgtatttaattaaacatgtcgattattatgtttttgttgcttctcttgtctggttatcttatcatcacttgattattaatgtcaattcttagg  15432000  Previous    Next  AGI:  At4g31900.1    Description:  chromatin remodeling factor, putative. similar to PKL (PICKLE) [Arabidopsis thaliana] (TAIR:AT2G25170.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (japonica cultivar-group)] (GB:BAD72546.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa] (GB:AAL47211.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (indica cultivar-group)] (GB:AAL47203.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Protein of unknown function DUF1086 (InterPro:IPR009462); contains InterPro domain Protein of unknown function DUF1087 (InterPro:IPR009463); contains InterPro domain Helicase, supe Range:  from: 15431534    to: 15438449    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version