Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           --------->AHL20(2)     <---------AHL20(2)     --------->AHL20(2)    --------->AHL20(1)    --------->AHL20(2)                                                 --------->YAB1    <---------AHL20(1)                                                <---------ATHB12    <---------AHL20(2)                                               --------->ANAC58 ---------AHL20(1)                        <---------HSFB2a(2)        --------->ANAC58 -------->AHL20(2)                        --------->HSFB2a(2)       --------->WOX13(1) ---------AHL20(2)                       <---------LBD16     --------->WOX13(1) ------->AHL20(2)              <----------DOF2              ------>ZmHOX2a(2)                      -- ----->TOE2(3)--------->TOE2(3)<---------DAG2             <---------AGP1   ---------->DOF2 --------->DAG2 --GT1   <---------AHL20(2)  ------>ZmHOX2a(1) --------->AHL20(2)  --------->MYB46(3)     ---------->DOF2   attaaatttattttaatctaaattgttcttcctctttttcaattctggataaattagttggatctatcaacaatcaacaaagaaaacaaaacaaaagtga  15402600                                 <-----------GT1                          ----------->GT1                         --------->DAG2                        --------->DAG2                   --------------->AGL15                   <---------------AGL15                  ----------------->AGL2                  ==========================================================================MADS_MADS                  <-----------------AGL1                  --------->ANAC58                  --------->ANAC58<---------At5g28300                  ----------------->AG                       <---------ANAC46                  ----------------->AGL1                     <---------ANAC58                  <-----------------AG             ----------->RAV1(2)    <-----------------AGL3             --------------->AtSPL8         ---------->DOF2  ----------->GT1   --------->GLK1(2)   ---------->DOF2 ========================RAV---------->DOF2 ------->YAB1<---------------AtSPL8    ----------->RAV1(1)   <---------ANAC58                      --   atgagaattttgaatttagtacccaaaaaggtaatttacagcaacacaaagaaacctggactgtcgtgaaaagaggcctaaaaatgggcctgaattgggc  15402700                  --------->ANAC58      <---------ZAT14    <---------CCA1(1)                  --------->ALFIN1    <---------RVE1(1)                <---------ANAC46             <------NtERF2   <---------AHL20(1)              =================================HOX2a_HOX2a      <---------At4g35610   --------->ARR11(3)            <---------ARR14(2)          ------>ZmHOX2a(1)<---------YAB1 --------   --------->AHL20(1)           <------ZmHOX2a(1)        <-----------GT1    <-----------GT1  --------   <---------ARR11(3)  --------->MYB52(1)               <-----------GT1    <---------AHL20(2)<------- -------->DOF2    --------->ANAC58 ------>ZmHOX2a(2)   <---------AHL20(2)  <---------YAB1    <-------   ctaaagatattttgggagggaagcaaaacggtaaggatcgagtggagcgagtctgattttatcctctcggcaagttttttattattctgcttcgaaaatt  15402800                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                         --------->MYB52(1)                    <-----                                                        <---------ZAT14                        ------                                                        --------->ZAT14                        ------                  <---------ZAT14                       <---------WRKY38(1)                    <-----         --------->ARR11(3)                             <---------WRKY12                       ------         <---------ARR11(3)                            ----------->HVH21                      ------- --------->YAB1   <-------TEIL                       <------------------SPL14                 <------ ->HSFB2a(1)      --------->ZAT14                    --------->LBD16                         -------- ->HSFC1(2)      <-----------HVH21                  <---------DEAR3(1)                      <-------- --HSFB2a(1)   --------->LBD16                    <---------At4g35610         <---------YAB1<-------- --HSFC1(2)  <---------LBD16                <----------DOF2           --------->YAB1       <---------At4g35610   ctttcatcaaaaatctccggttcaccgaaatcgactccctcgcgctcttttcagccggtgaacggagacgaatcaaaatgctcatagctattcagcacgt  15402900 --PIF5 --MYC2 ->MYC3 --MYC3 ->PIF5 --PIF4 ->PIF4                  <---------ALFIN1 ->MYC2                ------>NtERF2                <---------MYB52(1)           --------->ETT(1) --MYC4               --------->ANAC46             --------->TOE2(3)             <---------ANAC46 ->MYC4    --------->MYB52(2)                  <---------ICU4                   <---------LBD16 -->ANAC55(2)    --------->ARR14(2)           <---------YAB1               <---------ICU4 ---ANAC55(2)    <---------ARR14(2)         <---------ICU4                <---------DAG2    <-------- ---->OsbHLH66   --------->ARR11(3)         --------->YAB1            ------------>CBF <------------CBF ----OsbHLH66   <---------CCA1(2)         ------->TEIL            <---------ANAC58 <------NtERF2 -ALFIN1 <---------MYB52(1)--------->O2<---------YAB1             <---------ANAC58--------->LBD16  <-   gtttgtgttttgttagttatatctgcgccacttgaaatgtgatgaatcatcatcgttaatctctgttttcgtttcaatttttgccggagaattgaattgt  15403000            <---------CCA1(2)          <---------ANAC58                                                        <---------ANAC58     <---------ANAC46                                                        <---------ANAC58     <---------ANAC58                                             xxxxxxxxxxxxxxxxxx>smallRNA(fl3)     <---------AtLEC2                                  ----------->GT1       <---------ANAC58     <---------ANAC58        <---------ANAC58       <---------ANAC46  <------MYB46(1) <---------ANAC58 --------->HSFB2a(2) --------->ZAT14  <---------ANAC46    <---------YAB1          -- <---------ANAC58 <---------HSFB2a(2) <---------ZAT14 --------->ALFIN1<------MYB83<---------ANAC58 -- ----CBF  <---------ANAC58  <------NtERF2           <---------ANAC58 <---------MYB46(3)          ---- --------YAB1  --------->ZAT6<---------ANAC58       <---------ANAC58<---------MYB52(1)        -------   tttgcttgcttggcttatctctagaatggtcgcgttactctgctctgcgagtttgtgtggtgatatatcagttggtgatgcttgtcttgttagtaacatc  15403100                                                          <---------ANAC58                                                      --------->ARR14(2)                                               <----------DOF2                                            --------->ANAC58                                            --------->ANAC58       --------->ANAC58      <-----------RAV1(1)                   --------->ANAC46  <---------LBD16 ------->ANAC58     <------MYB83          <---------ALFIN1<---------ANAC58 ------->ANAC58     <------MYB46(1) <---------TOE2(3) <---------ARR14(2) ------>DOF2       --------->MYB59 ---------->DOF2   --------->ATHB12                              <- -->TOE2(3)   --------->ICU4   <------ZmHOX2a(1)    <---------YAB1 --------->ANAC58             <----   aaagcaaaatgtcgcgataatttggttactggaggattaaagttccacgctttgaagattgggtctcggaagaaacactggagaaggaagagtatgagat  15403200            --------->AtLEC2  <---------ZAT18  --------->ZAT14                      <---------YAB1  <---------ZAT14                    --------------->AGL15 <---------ZAT6           <---------DAG2--------->YAB1                                           ---- --------ANAC46           <----------DOF2          --------->At4g35610       <---------ZAT14--------- -----REM1(1)  ---------->DOF2<---------ANAC46---------->DOF2      <-----------HVH21 --------->MYB52(1)   gtagtgtagtctccatgaaaagttctgacttttcgggttctatgataagaaagagctcaaaacctgatttgtcatcgagtgaagaagtaacgaggggttt  15403300                                               <---------ANAC58                                               <---------ANAC58                 <---------ANAC46                                         --------->ATHB12            --------->ANAC46                 <---------GLK1(2)      <---------ATHB12             --------->ZAT6           <------     <---------ARR14(2)      <---------ANAC46  <---------ANAC46   --------->ZAT18             <------ ------>DOF2   <---------YAB1<---------ANAC58<---------MYB46(3)   <---------ZAT18    <-----------GT1 -->GT1  ------>ZmHOX2a(1)   <---------ANAC58--------->MYB55(2)   --------->ZAT14 ----------->GT1   aaagtcgtttcctgatactgattcttcattttcgtatttcaaatcagtggctgggaatttgaatttagttcacactactgagacttgtaactacatgctt  15403400                                                                                                -----                                                                                                <----                                  <---------ANAC58                                       <---------ANAC58               ----------->GT1    <---------ANAC46                                       --------->ANAC55(2)           <---------MYB46(3)     <---------ANAC58                          --------->ARR14(2)  -----         <-------GAMYB      <---------ARR14(2)                              <---------ARR14(2)  <----  <----------DOF2          <------ZmHOX2a(1)                        ---------->DOF2      <---------ANAC55(2) ---ANAC58 <---------AtMYB61--------->ARR14(2)            ---------->DOF2 ----------->GT1<---------ANAC58 ---ANAC58<--------P     <---------TOE2(3)   --------->ATHB12    --------->YAB1     <---------ICU4   gaagctttgagggttgatggtaaacttgaggaaatggcttatgtgtttgatttgatgcagaaaagaatcataaagagggatactaatacttacttgacta  15403500  Previous    Next  AGI:  At4g31840.1    Description:  plastocyanin-like domain-containing protein. similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25060.1); similar to phytocyanin-like arabinogalactan-protein [Gossypium hirsutum] (GB:ABI96983.1); contains InterPro domain Cupredoxin (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) Range:  from: 15401646    to: 15402623    Orientation: Forward Links:  TAIR  MIPS    AGI:  At4g31850.1    Description:  PGR3 (PROTON GRADIENT REGULATION 3). similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44353.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47632.1); similar to hypothetical protein OsI_032490 [Oryza sativa (indica cultivar-group)] (GB:EAY78531.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 15403026    to: 15406499    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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